Renaming P2B2 files to meet the proper naming conventions.

Author: bvanessen

Pilot2/P2B2/__init__.py

@@ -28,7 +28,6 @@ def ReadConfig(File):
     config.read(File)
     section=config.sections()
     Global_Params={}
-    Global_Params['data_folder']=config.get(section[0],'data_folder')
     Global_Params['num_hidden']=eval(config.get(section[0],'num_hidden'))
     Global_Params['num_recurrent']=eval(config.get(section[0],'num_recurrent'))
     Global_Params['look_back']=eval(config.get(section[0],'look_back'))

Pilot2/P2B2/p2b2.py

@@ -26,7 +26,7 @@ def str2bool(v):
 	parser.add_option("--evaluate", action="store_true",dest="eval_bool",default=False,help="Use model for inference")
 	parser.add_option("--home-dir",help="Home Directory",dest="home_dir",type=str,default='.')
 	parser.add_option("--save-dir",help="Save Directory",dest="save_path",type=str,default=None)
-	parser.add_option("--config-file",help="Config File",dest="config_file",type=str,default='./config.ini')
+	parser.add_option("--config-file",help="Config File",dest="config_file",type=str,default='./p2b2_small_model.txt')
 	parser.add_option("--model-file",help="Trained Model Pickle File",dest="weight_path",type=str,default=None)
 	parser.add_option("--memo",help="Memo",dest="base_memo",type=str,default=None)
 	parser.add_option("--seed", action="store_true",dest="seed",default=False,help="Random Seed")

Pilot2/P2B2/p2b2_baseline_keras.py

@@ -0,0 +1,12 @@
+[Global_Params]
+data_folder=/Users/talathi1/Work/DataSets/CANDLE/3k_run10
+num_hidden=[512,256,128,64,32,16] 
+num_recurrent=[16,16,16] 
+look_back=10
+look_forward=1
+batch_size=32
+learning_rate=0.01
+epochs=1
+cool=True
+weight_decay=0.0005
+noise_factor=0

Pilot2/P2B2/p2b2_small_model.txt

@@ -3,6 +3,6 @@
   '3k_Ordered' : ('3k_run32_10us.35fs-DPPC.50-DOPC.10-CHOL.40.dir', '6de30893cecbd9c66ea433df0122b328'),
   '3k_Ordered_and_gel' : ('3k_run43_10us.35fs-DPPC.70-DOPC.10-CHOL.20.dir', '45b9a2f7deefb8d5b016b1c42f5fba71'),
   '6k_Disordered' : ('6k_run10_25us.35fs-DPPC.10-DOPC.70-CHOL.20.dir', '24e4f8d3e32569e8bdd2252f7259a65b'),
-  '6k_Ordered' : ('6k_run32_25us.35fs-DPPC.50-DOPC.10-CHOL.40.dir', '4'),
-  '6k_Ordered and gel' : ('6k_run43_25us.35fs-DPPC.70-DOPC.10-CHOL.20.dir', '5')
+  '6k_Ordered' : ('6k_run32_25us.35fs-DPPC.50-DOPC.10-CHOL.40.dir', '0b3b39086f720f73ce52d5b07682570d'),
+  '6k_Ordered and gel' : ('6k_run43_25us.35fs-DPPC.70-DOPC.10-CHOL.20.dir', '3b3e069a7c55a4ddf805f5b898d6b1d1')
   }