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Thomas Brettin
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merge fix
2 parents ac2eef2 + 46e7a82 commit bbb06d9

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‎P1B1/1054983.cobaltlog‎

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Jobid: 1054983
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qsub --mode script -A Candle_ECP -n 1 -t 01:00:00 -M [email protected] --jobname Candle-ECP qsub_p1b1_baseline.sh
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Thu Mar 23 04:23:19 2017 +0000 (UTC) submitted with cwd set to: /gpfs/mira-fs1/projects/Candle_ECP/brettin/benchmarks/P1B1
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jobid 1054983 submitted from terminal /dev/pts/16
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Thu Mar 23 04:23:41 2017 +0000 (UTC)
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Thu Mar 23 04:23:41 2017 +0000 (UTC) Command: '/usr/bin/ssh' 'cc045.cooley' '/usr/bin/cobalt-launcher.py' '--nf' '/var/tmp/cobalt.1054983' '--jobid' '1054983' '--cwd' '/gpfs/mira-fs1/projects/Candle_ECP/brettin/benchmarks/P1B1' '--env' 'COBALT_JOBID=1054983' '/gpfs/mira-fs1/projects/Candle_ECP/brettin/benchmarks/P1B1/qsub_p1b1_baseline.sh'
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Thu Mar 23 04:23:41 2017 +0000 (UTC)
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Thu Mar 23 04:23:41 2017 +0000 (UTC) Environment:
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Thu Mar 23 04:23:41 2017 +0000 (UTC) SHELL=/bin/bash
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Thu Mar 23 04:23:41 2017 +0000 (UTC) COBALT_NODEFILE=/tmp/tmpZuSBCX
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Thu Mar 23 04:23:41 2017 +0000 (UTC) COBALT_PARTNAME=cc045.cooley
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Thu Mar 23 04:23:41 2017 +0000 (UTC) COBALT_JOBID=1054983
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Thu Mar 23 04:23:41 2017 +0000 (UTC) COBALT_STARTTIME=1490243004
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Thu Mar 23 04:23:41 2017 +0000 (UTC) LOGNAME=brettin
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Thu Mar 23 04:23:41 2017 +0000 (UTC) USER=brettin
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Thu Mar 23 04:23:41 2017 +0000 (UTC) COBALT_ENDTIME=1490246604
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Thu Mar 23 04:23:41 2017 +0000 (UTC) COBALT_PARTSIZE=1
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Thu Mar 23 04:23:41 2017 +0000 (UTC) HOME=/home/brettin
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Thu Mar 23 04:23:41 2017 +0000 (UTC) COBALT_JOBSIZE=1
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Thu Mar 23 04:23:41 2017 +0000 (UTC)
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Thu Mar 23 04:23:41 2017 +0000 (UTC) Info: stdin received from /dev/null
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Thu Mar 23 04:23:41 2017 +0000 (UTC) Info: stdout sent to /gpfs/mira-fs1/projects/Candle_ECP/brettin/benchmarks/P1B1/1054983.output
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Thu Mar 23 04:23:41 2017 +0000 (UTC) Info: stderr sent to /gpfs/mira-fs1/projects/Candle_ECP/brettin/benchmarks/P1B1/1054983.error
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Thu Mar 23 04:23:41 2017 +0000 (UTC)
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Thu Mar 23 04:32:28 2017 +0000 (UTC) Info: task completed normally with an exit code of 0; initiating job cleanup and removal

‎P1B1/1054983.error‎

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Warning: could not import binstar_client ('args' object has no attribute 'site')Warning: could not import binstar_client ('args' object has no attribute 'site')Warning: could not import binstar_client ('args' object has no attribute 'site')Using TensorFlow backend.

‎P1B1/1054983.output‎

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/sbin:/usr/sbin:/usr/local/sbin:/soft/environment/softenv-1.6.2/bin:/bin:/usr/bin:/usr/local/bin:/usr/X11R6/bin:/soft/perftools/darshan/darshan-2.2.4/bin:/soft/versioning/git/2.3.0/bin:/soft/buildtools/cmake/current/bin:/soft/libraries/hdf5-1.8.9/bin:/soft/libraries/mpi/mvapich2-2.1/intel/bin:/soft/compilers/intel/composerxe/bin:/soft/visualization/cuda-7.5.18/bin:/soft/compilers/java/jdk1.8.0_60/bin:/soft/libraries/anaconda/bin:/soft/compilers/gcc/4.9.3/bin:/home/brettin/bin:/soft/environment/softenv-1.6.2/bin:/bin:/usr/bin:/sbin:/usr/sbin:/usr/local/bin:/usr/X11R6/bin:/soft/buildtools/trackdeps/bin:/usr/lpp/mmfs/bin:/opt/ibutils/bin:/home/brettin/bin
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activiting Candle_ML
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:/gpfs/mira-fs1/projects/Candle_ECP/brettin/benchmarks/P1B1::/gpfs/mira-fs1/projects/Candle_ECP/brettin/benchmarks/P1B1/../lib
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/soft/analytics/conda/env/Candle_ML/bin/python
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____________________________________________________________________________________________________
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Layer (type) Output Shape Param # Connected to
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====================================================================================================
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input_1 (InputLayer) (None, 60483) 0
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____________________________________________________________________________________________________
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dense_1 (Dense) (None, 2000) 120968000 input_1[0][0]
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____________________________________________________________________________________________________
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dense_2 (Dense) (None, 600) 1200600 dense_1[0][0]
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____________________________________________________________________________________________________
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dense_3 (Dense) (None, 2000) 1202000 dense_2[0][0]
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____________________________________________________________________________________________________
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dense_4 (Dense) (None, 60483) 121026483 dense_3[0][0]
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====================================================================================================
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Total params: 244397083
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____________________________________________________________________________________________________
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None
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Train on 2400 samples, validate on 600 samples
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Epoch 1/2
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50/2400 [..............................] - ETA: 61s - loss: 0.1545 100/2400 [>.............................] - ETA: 88s - loss: 0.1200 150/2400 [>.............................] - ETA: 103s - loss: 0.1009 200/2400 [=>............................] - ETA: 107s - loss: 0.0895 250/2400 [==>...........................] - ETA: 107s - loss: 0.0803 300/2400 [==>...........................] - ETA: 107s - loss: 0.0737 350/2400 [===>..........................] - ETA: 107s - loss: 0.0689 400/2400 [====>.........................] - ETA: 107s - loss: 0.0653 450/2400 [====>.........................] - ETA: 105s - loss: 0.0624 500/2400 [=====>........................] - ETA: 104s - loss: 0.0601 550/2400 [=====>........................] - ETA: 102s - loss: 0.0580 600/2400 [======>.......................] - ETA: 100s - loss: 0.0563 650/2400 [=======>......................] - ETA: 97s - loss: 0.0549  700/2400 [=======>......................] - ETA: 94s - loss: 0.0537 750/2400 [========>.....................] - ETA: 92s - loss: 0.0526 800/2400 [=========>....................] - ETA: 89s - loss: 0.0519 850/2400 [=========>....................] - ETA: 86s - loss: 0.0511 900/2400 [==========>...................] - ETA: 83s - loss: 0.0504 950/2400 [==========>...................] - ETA: 80s - loss: 0.04981000/2400 [===========>..................] - ETA: 77s - loss: 0.04931050/2400 [============>.................] - ETA: 74s - loss: 0.04881100/2400 [============>.................] - ETA: 72s - loss: 0.04831150/2400 [=============>................] - ETA: 69s - loss: 0.04791200/2400 [==============>...............] - ETA: 66s - loss: 0.04761250/2400 [==============>...............] - ETA: 64s - loss: 0.04721300/2400 [===============>..............] - ETA: 61s - loss: 0.04701350/2400 [===============>..............] - ETA: 58s - loss: 0.04661400/2400 [================>.............] - ETA: 56s - loss: 0.04631450/2400 [=================>............] - ETA: 53s - loss: 0.04611500/2400 [=================>............] - ETA: 50s - loss: 0.04581550/2400 [==================>...........] - ETA: 47s - loss: 0.04561600/2400 [===================>..........] - ETA: 45s - loss: 0.04531650/2400 [===================>..........] - ETA: 42s - loss: 0.04511700/2400 [====================>.........] - ETA: 40s - loss: 0.04501750/2400 [====================>.........] - ETA: 37s - loss: 0.04491800/2400 [=====================>........] - ETA: 34s - loss: 0.04481850/2400 [======================>.......] - ETA: 31s - loss: 0.04461900/2400 [======================>.......] - ETA: 28s - loss: 0.04451950/2400 [=======================>......] - ETA: 26s - loss: 0.04432000/2400 [========================>.....] - ETA: 23s - loss: 0.04422050/2400 [========================>.....] - ETA: 20s - loss: 0.04402100/2400 [=========================>....] - ETA: 17s - loss: 0.04392150/2400 [=========================>....] - ETA: 14s - loss: 0.04382200/2400 [==========================>...] - ETA: 11s - loss: 0.04372250/2400 [===========================>..] - ETA: 8s - loss: 0.0435 2300/2400 [===========================>..] - ETA: 5s - loss: 0.04342350/2400 [============================>.] - ETA: 2s - loss: 0.04342400/2400 [==============================] - 144s - loss: 0.0432 - val_loss: 0.0382
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Epoch 2/2
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50/2400 [..............................] - ETA: 150s - loss: 0.0358 100/2400 [>.............................] - ETA: 153s - loss: 0.0372 150/2400 [>.............................] - ETA: 142s - loss: 0.0370 200/2400 [=>............................] - ETA: 141s - loss: 0.0374 250/2400 [==>...........................] - ETA: 137s - loss: 0.0373 300/2400 [==>...........................] - ETA: 135s - loss: 0.0378 350/2400 [===>..........................] - ETA: 131s - loss: 0.0380 400/2400 [====>.........................] - ETA: 129s - loss: 0.0379 450/2400 [====>.........................] - ETA: 125s - loss: 0.0377 500/2400 [=====>........................] - ETA: 123s - loss: 0.0379 550/2400 [=====>........................] - ETA: 119s - loss: 0.0379 600/2400 [======>.......................] - ETA: 117s - loss: 0.0380 650/2400 [=======>......................] - ETA: 113s - loss: 0.0381 700/2400 [=======>......................] - ETA: 110s - loss: 0.0381 750/2400 [========>.....................] - ETA: 108s - loss: 0.0382 800/2400 [=========>....................] - ETA: 105s - loss: 0.0381 850/2400 [=========>....................] - ETA: 102s - loss: 0.0380 900/2400 [==========>...................] - ETA: 99s - loss: 0.0379  950/2400 [==========>...................] - ETA: 96s - loss: 0.03781000/2400 [===========>..................] - ETA: 92s - loss: 0.03791050/2400 [============>.................] - ETA: 89s - loss: 0.03781100/2400 [============>.................] - ETA: 86s - loss: 0.03791150/2400 [=============>................] - ETA: 83s - loss: 0.03801200/2400 [==============>...............] - ETA: 79s - loss: 0.03801250/2400 [==============>...............] - ETA: 76s - loss: 0.03801300/2400 [===============>..............] - ETA: 73s - loss: 0.03801350/2400 [===============>..............] - ETA: 70s - loss: 0.03801400/2400 [================>.............] - ETA: 67s - loss: 0.03791450/2400 [=================>............] - ETA: 63s - loss: 0.03791500/2400 [=================>............] - ETA: 60s - loss: 0.03791550/2400 [==================>...........] - ETA: 56s - loss: 0.03781600/2400 [===================>..........] - ETA: 53s - loss: 0.03781650/2400 [===================>..........] - ETA: 50s - loss: 0.03781700/2400 [====================>.........] - ETA: 47s - loss: 0.03781750/2400 [====================>.........] - ETA: 43s - loss: 0.03781800/2400 [=====================>........] - ETA: 40s - loss: 0.03771850/2400 [======================>.......] - ETA: 37s - loss: 0.03771900/2400 [======================>.......] - ETA: 33s - loss: 0.03781950/2400 [=======================>......] - ETA: 30s - loss: 0.03782000/2400 [========================>.....] - ETA: 27s - loss: 0.03772050/2400 [========================>.....] - ETA: 23s - loss: 0.03772100/2400 [=========================>....] - ETA: 20s - loss: 0.03772150/2400 [=========================>....] - ETA: 17s - loss: 0.03782200/2400 [==========================>...] - ETA: 13s - loss: 0.03782250/2400 [===========================>..] - ETA: 10s - loss: 0.03782300/2400 [===========================>..] - ETA: 6s - loss: 0.0377 2350/2400 [============================>.] - ETA: 3s - loss: 0.03782400/2400 [==============================] - 166s - loss: 0.0378 - val_loss: 0.0382

‎P1B1/1054990.cobaltlog‎

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Jobid: 1054990
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qsub --mode script -A Candle_ECP -n 1 -t 01:00:00 -M [email protected] --jobname Candle-ECP qsub_p1b1_baseline.sh
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Thu Mar 23 04:40:45 2017 +0000 (UTC) submitted with cwd set to: /gpfs/mira-fs1/projects/Candle_ECP/brettin/benchmarks/P1B1
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jobid 1054990 submitted from terminal /dev/pts/16
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Thu Mar 23 04:41:10 2017 +0000 (UTC)
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Thu Mar 23 04:41:10 2017 +0000 (UTC) Command: '/usr/bin/ssh' 'cc048.cooley' '/usr/bin/cobalt-launcher.py' '--nf' '/var/tmp/cobalt.1054990' '--jobid' '1054990' '--cwd' '/gpfs/mira-fs1/projects/Candle_ECP/brettin/benchmarks/P1B1' '--env' 'COBALT_JOBID=1054990' '/gpfs/mira-fs1/projects/Candle_ECP/brettin/benchmarks/P1B1/qsub_p1b1_baseline.sh'
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Thu Mar 23 04:41:10 2017 +0000 (UTC)
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Thu Mar 23 04:41:10 2017 +0000 (UTC) Environment:
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Thu Mar 23 04:41:10 2017 +0000 (UTC) SHELL=/bin/bash
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Thu Mar 23 04:41:10 2017 +0000 (UTC) COBALT_NODEFILE=/tmp/tmpel2Y2k
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Thu Mar 23 04:41:10 2017 +0000 (UTC) COBALT_PARTNAME=cc048.cooley
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Thu Mar 23 04:41:10 2017 +0000 (UTC) COBALT_JOBID=1054990
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Thu Mar 23 04:41:10 2017 +0000 (UTC) COBALT_STARTTIME=1490244050
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Thu Mar 23 04:41:10 2017 +0000 (UTC) LOGNAME=brettin
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Thu Mar 23 04:41:10 2017 +0000 (UTC) USER=brettin
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Thu Mar 23 04:41:10 2017 +0000 (UTC) COBALT_ENDTIME=1490247650
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Thu Mar 23 04:41:10 2017 +0000 (UTC) COBALT_PARTSIZE=1
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Thu Mar 23 04:41:10 2017 +0000 (UTC) HOME=/home/brettin
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Thu Mar 23 04:41:10 2017 +0000 (UTC) COBALT_JOBSIZE=1
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Thu Mar 23 04:41:10 2017 +0000 (UTC)
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Thu Mar 23 04:41:10 2017 +0000 (UTC) Info: stdin received from /dev/null
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Thu Mar 23 04:41:10 2017 +0000 (UTC) Info: stdout sent to /gpfs/mira-fs1/projects/Candle_ECP/brettin/benchmarks/P1B1/1054990.output
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Thu Mar 23 04:41:10 2017 +0000 (UTC) Info: stderr sent to /gpfs/mira-fs1/projects/Candle_ECP/brettin/benchmarks/P1B1/1054990.error
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Thu Mar 23 04:41:10 2017 +0000 (UTC)
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Thu Mar 23 04:48:44 2017 +0000 (UTC) Info: task completed normally with an exit code of 0; initiating job cleanup and removal

‎P1B1/1054990.error‎

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Warning: could not import binstar_client ('args' object has no attribute 'site')Warning: could not import binstar_client ('args' object has no attribute 'site')Warning: could not import binstar_client ('args' object has no attribute 'site')Using TensorFlow backend.

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