Add required 'model_name' keyword to default_model files

jmohdyusof · jmohdyusof · commit c8e4954706ca · 2022-11-21T11:12:07.000-07:00
diff --git a/Pilot1/Combo/combo_default_model.txt b/Pilot1/Combo/combo_default_model.txt
@@ -1,4 +1,5 @@
 [Global_Params]
+model_name='combo'
 cell_features=['expression']
 drug_features=['descriptors']
 dense=[1000, 1000, 1000]
diff --git a/Pilot1/P1B3/p1b3_default_model.txt b/Pilot1/P1B3/p1b3_default_model.txt
@@ -1,4 +1,5 @@
 [Global_Params]
+model_name='p1b3'
 dense=[1000, 500, 100, 50]
 batch_size=100
 epochs=1
diff --git a/Pilot1/ST1/class_default_model.txt b/Pilot1/ST1/class_default_model.txt
@@ -1,4 +1,5 @@
 [Global_Params]
+model_name = 'sct'
 data_url = "https://ftp.mcs.anl.gov/pub/candle/public/benchmarks/Examples/xform-smiles-data/"
 train_data = 'chm.lipinski.trn.csv'
 val_data = 'chm.lipinski.val.csv'
diff --git a/Pilot1/ST1/regress_default_model.txt b/Pilot1/ST1/regress_default_model.txt
@@ -1,4 +1,5 @@
 [Global_Params]
+model_name = 'srt'
 data_url = "https://ftp.mcs.anl.gov/pub/candle/public/benchmarks/Examples/xform-smiles-data/"
 train_data = 'chm.weight.trn.csv'
 val_data = 'chm.weight.val.csv'
diff --git a/Pilot1/ST1/regress_docking_model.txt b/Pilot1/ST1/regress_docking_model.txt
@@ -1,4 +1,5 @@
 [Global_Params]
+model_name = 'srt'
 data_url = "https://ftp.mcs.anl.gov/pub/candle/public/benchmarks/Examples/xform-smiles-data/"
 train_data = 'Nsp13.helicase_m1_pocket2.train'
 val_data = 'Nsp13.helicase_m1_pocket2.val'
diff --git a/Pilot1/Uno/uno_default_model.txt b/Pilot1/Uno/uno_default_model.txt
@@ -1,4 +1,5 @@
 [Global_Params]
+model_name='uno'
 train_sources=['GDSC', 'CTRP', 'ALMANAC']
 test_sources=['train']
 cell_types=None
diff --git a/Pilot2/P2B1/p2b1_default_model.txt b/Pilot2/P2B1/p2b1_default_model.txt
@@ -1,4 +1,5 @@
 [Global_Params]
+model_name='p2b1'
 num_hidden=[512,32]
 batch_size=64
 learning_rate=0.01

Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,5 @@`
`1`	`1`	`[Global_Params]`
	`2`	`+model_name='combo'`
`2`	`3`	`cell_features=['expression']`
`3`	`4`	`drug_features=['descriptors']`
`4`	`5`	`dense=[1000, 1000, 1000]`
Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,5 @@`
`1`	`1`	`[Global_Params]`
	`2`	`+model_name='p1b3'`
`2`	`3`	`dense=[1000, 500, 100, 50]`
`3`	`4`	`batch_size=100`
`4`	`5`	`epochs=1`
Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,5 @@`
`1`	`1`	`[Global_Params]`
	`2`	`+model_name = 'sct'`
`2`	`3`	`data_url = "https://ftp.mcs.anl.gov/pub/candle/public/benchmarks/Examples/xform-smiles-data/"`
`3`	`4`	`train_data = 'chm.lipinski.trn.csv'`
`4`	`5`	`val_data = 'chm.lipinski.val.csv'`
Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,5 @@`
`1`	`1`	`[Global_Params]`
	`2`	`+model_name = 'srt'`
`2`	`3`	`data_url = "https://ftp.mcs.anl.gov/pub/candle/public/benchmarks/Examples/xform-smiles-data/"`
`3`	`4`	`train_data = 'chm.weight.trn.csv'`
`4`	`5`	`val_data = 'chm.weight.val.csv'`
Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,5 @@`
`1`	`1`	`[Global_Params]`
	`2`	`+model_name='uno'`
`2`	`3`	`train_sources=['GDSC', 'CTRP', 'ALMANAC']`
`3`	`4`	`test_sources=['train']`
`4`	`5`	`cell_types=None`
Original file line number	Diff line number	Diff line change
`@@ -1,4 +1,5 @@`
`1`	`1`	`[Global_Params]`
	`2`	`+model_name='p2b1'`
`2`	`3`	`num_hidden=[512,32]`
`3`	`4`	`batch_size=64`
`4`	`5`	`learning_rate=0.01`