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examples/M16/README.md

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@@ -22,29 +22,29 @@ To flexibly generate data partitions for cross-validation analysis, such as part
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```quantile_normalizationa```
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To perform quantile normalization of genomic data [8] with tolerance of missing values.
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To perform quantile normalization of genomic data [8] with tolerance of missing values. [[see example code]](#quantile-normalization-of-gene-expression-data)
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```combat_batch_effect_removal```
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To perform ComBat analysis [9] on gene expression data to remove batch effects.
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To perform ComBat analysis [9] on gene expression data to remove batch effects. [[see example code]](#combat-batch-normalization-on-gene-expression-data)
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```generate_gene_set_data```
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To calculate genomic representations at gene set level, such as the average expression values of genes in a pathway and the total number of SNP mutations in a genetic pathway.
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To calculate genomic representations at gene set level, such as the average expression values of genes in a pathway and the total number of SNP mutations in a genetic pathway. [[see example code]](#generate-gene-set-level-data)
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## General Feature Selection Functions
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```select_features_by_missing_values```
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To remove features with (many) missing values.
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To remove features with (many) missing values. [[see example code]](#select-features-based-on-missing-values)
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```select_features_by_variation```
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To remove features with no or small variations.
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To remove features with no or small variations. [[see example code]](#select-features-based-on-variation)
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```select_decorrelated_features```
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To select a subset of features that are not identical or highly correlated with each other.
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To select a subset of features that are not identical or highly correlated with each other. [[see example code]](#select-decorrelated-features)
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## Feature (Gene) Selection Functions Specific to Pilot 1 Applications
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