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2_CITATION.md

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- **ENCORE. Enhancing Computational Reproducibility**
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**ENCORE. Enhancing Computational Reproducibility**
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[THIS FILE WILL BE UPDATED]
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*VERSION V4.0*
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[THIS FILE WILL BE UPDATED]
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##### CITATION
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ENCORE is an initiative of the Bioinformatics Laboratory ([www.bioinformaticslaboratory.eu](http://www.bioinformaticslaboratory.eu)) and can be cited as
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* van Kampen, A., Mahamune, U., Jongejan, A., van Schaik, B., Balashova, D., Lashgari, D., Pras-Raves, M., Wever, E., Valiente, R.G., Dane, A., and Moerland, P (2023). ENCORE. A Practical Implementation to Improve Reproducibility and Transparency of Computational Research. [MetaArXiv](https://osf.io/preprints/metaarxiv/m9yqz/). September 27. [doi:10.31222/osf.io/m9yqz]().
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##### CITATION
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* Antoine H.C. van Kampen, Utkarsh Mahamune, Aldo Jongejan, Barbera D.C. van Schaik1, Daria Balashova, Danial Lashgari, Rodrigo García-Valiente, Mia Pras-Raves, Adrie D. Dane, Perry D. Moerland (2023) ENCORE. A practical implementation to improve reproducibility and transparency of computational research. in prep.
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ENCORE is an initiative of the Bioinformatics Laboratory ([www.bioinformaticslaboratory.eu](http://www.bioinformaticslaboratory.eu)) and can be cited as
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* van Kampen, A., Mahamune, U., Jongejan, A., van Schaik, B., Balashova, D., Lashgari, D., Pras-Raves, M., Wever, E., Valiente, R.G., Dane, A., and Moerland, P (2023). ENCORE. A Practical Implementation to Improve Reproducibility and Transparency of Computational Research. [MetaArXiv](https://osf.io/preprints/metaarxiv/m9yqz/). September 27. [doi:10.31222/osf.io/m9yqz]().
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The **FSS Navigator** is part of ENCORE and can be referred to as:
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* Antoine H.C. van Kampen, Utkarsh Mahamune, Aldo Jongejan, Barbera D.C. van Schaik1, Daria Balashova, Danial Lashgari, Rodrigo García-Valiente, Mia Pras-Raves, Adrie D. Dane, Perry D. Moerland (2023) ENCORE. A practical implementation to improve reproducibility and transparency of computational research. in prep.
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* Van Kampen AHC, Mahamune U, Jongejan, A (2023) The standardized file system structure (FSS) navigator. Zenodo. DOI: https://doi.org/10.5281/zenodo.7985655
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The **FSS Navigator** is part of ENCORE and can be referred to as:
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**GitHub**
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* Van Kampen AHC, Mahamune U, Jongejan, A (2023) The standardized file system structure (FSS) navigator. Zenodo. DOI: https://doi.org/10.5281/zenodo.7985655
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GitHub repository containing the ENCORE sFSS template:
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* https://github.com/EDS-Bioinformatics-Laboratory/ENCORE
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**GitHub**
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GitHub repository containing the ENCORE sFSS template:
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* https://github.com/EDS-Bioinformatics-Laboratory/ENCORE
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##### ACKNOWLEDGEMENTS
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ENCORE is an initiative of the Bioinformatics Laboratory ([www.bioinformaticslaboratory.eu](http://www.bioinformaticslaboratory.eu)) with contributions from all group members:
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- Prof. dr. Antoine van Kampen
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- Dr. Perry Moerland
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- Dr. Aldo Jongejan
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- Dr. Adrie Dane
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- Dr. Mia Pras-Raves (current address UMC Utrecht)
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- Barbera van Schaik
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- Eric Wever
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- Dasha Balashova
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- Rodrigo Garcia Valiente
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- Danial Lashgari
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- Utkarsh Mahamune
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##### ACKNOWLEDGEMENTS
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ENCORE is an initiative of the Bioinformatics Laboratory ([www.bioinformaticslaboratory.eu](http://www.bioinformaticslaboratory.eu)) with contributions from many group members:
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- Prof. dr. Antoine van Kampen
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- Dr. Perry Moerland
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- Dr. Aldo Jongejan
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- Dr. Adrie Dane
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- Dr. Mia Pras-Raves (current address UMC Utrecht)
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- Barbera van Schaik
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- Eric Wever
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- Dasha Balashova
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- Rodrigo Garcia Valiente
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- Danial Lashgari
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- Utkarsh Mahamune
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2_CITATION.txt

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ENCORE. Enhancing Computational Reproducibili**
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Version 4.0
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[THIS FILE WILL BE UPDATED]
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ACKNOWLEDGEMENTS
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ENCORE is an initiative of the Bioinformatics Laboratory (http://www.bioinformaticslaboratory.eu) with contributions from many group members:
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ENCORE is an initiative of the Bioinformatics Laboratory (http://www.bioinformaticslaboratory.eu) with contributions from all group members:
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- Prof. dr. Antoine van Kampen
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- Dr. Perry Moerland

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