diff --git a/README.md b/README.md index f52995d..ed44852 100644 --- a/README.md +++ b/README.md @@ -1,6 +1,7 @@ # Smart-Seq2 quality control pipeline Smart-seq2 quantification and quality control pipeline, developed for single-cell service at the Earlham Institue. +version 1.1 Starting with the FASTQ files generated from the SmartSeq2 experiment and a sample sheet containing the appropriate metadata, transcript level counts are generated, merged and used to produce QC metrics. A QC report document is generated for each of the plates, and the whole experiment. @@ -9,8 +10,6 @@ The pipeline does not require internet connection, but some required files have ## Inputs -* Demulitplexed read data (.fastq.gz) -* Sample sheet (.csv) * Config file ## Outputs @@ -23,11 +22,40 @@ The pipeline does not require internet connection, but some required files have ## Tools used -* kallisto 0.45.1 -* nextflow 19.04 -* R 3.5.2 and R packages (scater, rmarkdown, tidyverse) +* kallisto 0.48.0 +* nextflow +* R and R packages (scater 1.28.0, rjson 0.2.21, rmarkdown, tinytex, knitr, dplyr) * singularity 2.4.2 - +* pandoc, texlive, ghostscript + +## Preprocessing +1. convert the sample sheet to UNIX format +``` +source dos2unix-7.4.1_CBG +dos2unix -n old_samplesheet samplesheet +``` +2. format read names. The pipeline can take symbolic links and requires read names in the following format: +``` +${Sample_Plate}_${demultiplexed_readname} +``` +For example, the following FASTQ file from plate `CUB35DAY0` with a filename: +``` +R0882-S0001_A68701_CUB35DAY0A10_H3VY5DRX2_CGTACTAG-AGAGGATA_L001_R1.fastq.gz +``` +becomes +``` +CUB35DAY0_R0882-S0001_A68701_CUB35DAY0A10_H3VY5DRX2_CGTACTAG-AGAGGATA_L001_R1.fastq.gz +``` +3. make sample.csv +``` +echo "sampleId,R1,R2" > sample.csv +for sampleid in $(sed '1,1d' $samplesheet | cut -d',' -f2); do + R1=$(ls $symlinkdir/*_${sampleid}_*_R1.fastq.gz) + R2=$(ls $symlinkdir/*_${sampleid}_*_R2.fastq.gz) + echo $sampleid","$R1","$R2 >> $analysis_dir/samples.csv +done + +``` ## Running the pipeline @@ -36,27 +64,37 @@ Pipeline is written in Nextflow, so a run is usually initiated in the following Examples of a config file and sample sheet are in the repository. +An example: + +``` +cd /ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Analysis/scqc_reqs-1.1/4plates.run2 +sbatch -p ei-cb -J scqc_GENANNO-525.all_plate -o scqc_GENANNO-525.all_plate.%j.%N.log -c 1 --mem 10G \ + --mail-type=ALL --mail-user=user.email.com \ + --wrap "source singlecellQC-1.1_CBG && cd $analysis_dir && \ + nextflow run /ei/software/cb/singlecellQC/1.1/x86_64/bin/scqc_nf.sh \ + -c GENANNO-525.scqc-1.1.all_plates.config -with-report -resume" +``` + ## Config file -Parameters with 'params.' prefix can be passed when starting the pipeline by adding them at the end of the pipeline start call, e.g. +Parameters inside 'params' scope can be passed when starting the pipeline by adding them at the end of the pipeline start call, e.g. 'nextflow run scqc_nf.sh -c scqc.config --qcoutdir=my_qc_directory'. Alternatively, they can be edited in the config file. -Parameters related to the output, organism species and this pipeline specifics. +Parameters related to the output, organism species and this pipeline. * quantificationsdir - Directory to contain qunatifications produced for each of the samples and the counts matrices * qcoutdir' - Directory to contain the final QC report and other QC-related files -* reads - Location of sample FASTQ files. -* species - 'Hsapiens' or 'Mmusculus' * samplesheet - .csv file containing information about sample names, wells, control status and other sample metadata. +* reads - Location of sample FASTQ files. +* species - E.g., 'Hsapiens', 'Mmusculus'. * plate_ids - List of plate identificators (typically 4 strings), as they appear in the names of raw data samples. This is how the pipeline merges samples into plate-level matrices which are then used for plate-level QC. * mtnamefile - In case of non-human species, .rds file for mitochondrial gene. Leave empty ('') if human. This is a vector in R, containing the list of Ensembl transcript IDs, saved as .rds (using saveRDS()) - -* idx - Location of the kallisto index to use. Indices are precomputed. If you want to use a new one, one can be build with 'kallisto index'. * pattern - The format of the FASTQ endings showing how they should be grouped, as a glob pattern +* trans2gen_tsv - Transcript id to gene id mapping tsv file -General HPC parameters: +General HPC parameters in scope `executor`: * executor - Type of HPC scheduler. @@ -66,6 +104,8 @@ General HPC parameters: * queueSize - Maximum number of jobs the pipeline will submit at once. +Process specific parameters can be set in scope `process`. + For more information on configuration file options, check out [nextflow documentation](https://www.nextflow.io/docs/latest/config.html). @@ -73,19 +113,23 @@ For more information on configuration file options, check out [nextflow document Sample sheet will be unique for every run. -It is a .csv file that has to have the following columns. Additional columns are not a problem, but are not used. +It is a .csv file that has to have the following columns. Additional columns are not a problem, but are not used. +Make sure there is no white space in any entries. -* unique_sample_id_suffix - Part of the FASTQ file name that uniquely matches to one sample. This is how the pipeline connects the raw data with sample sheet information. -* well - Row/column location of the sample on the plate. Something like A01, A02, etc. These are needed for plate position plots. -* plate_id - A string corresponding to one of the plates used in the experiment. -* number_of_cells - Number of cells in a well. +* Sample_ID, Sample_Name - These two columns are also in the Illumina sample sheet. +* Sample_Plate - A string corresponding to one of the plates used in the experiment +* Sample_Well - Row/column location of the sample on the plate. Something like A01, A02, etc. These are needed for plate position plots. +* row - Row location of the sample on the plate. Normally ranges between A to H. +* column - Column location of the sample on the plate. Normal range is between 1 and 12. * control - TRUE if the well contains a control, FALSE otherwise. -* experiment - Name of the experiment. Can be anything as long as it's the same througout the column. +* number_of_cells - Number of cells in a well, e.g., 0, 1, 2, 20, 50. Wells contains more or less than 1 cells will be labeled as "control". +* meta_1: meta data field 1, catagorical value. +* meta_2: meta data field 2, catagorical value ## Required precomputed resources * kallisto index * list of mitochondrial genes +* transcript id to gene id mapping tsv file * singularity images -* biomaRt annotation diff --git a/Scripts/QCreport.Rmd b/Scripts/QCreport.Rmd index f5d891e..a63b40f 100644 --- a/Scripts/QCreport.Rmd +++ b/Scripts/QCreport.Rmd @@ -2,79 +2,95 @@ title: "SmartSeq2 quality control report" output: pdf_document --- + +```{r setup0, include=FALSE} +library(dplyr) +``` -```{r setup, include=FALSE} -knitr::opts_chunk$set(echo = FALSE, message = FALSE, warning = FALSE) -library(tidyverse) +```{r setup1, include=FALSE} library(knitr) -library(rlang) +knitr::opts_chunk$set(echo = FALSE, message = FALSE, warning = FALSE) +``` + +```{r setup3, include=FALSE} library(ggplot2) ``` +```{r tinytex_ver, include=FALSE} +options(tinytex.verbose = TRUE) +``` + ```{r preprocessing} + # pass .Rdata with: Rscript -e "objects=Rdata; rmarkdown::render('test.rmd')" if(!exists("objects")) stop("<--- scater files not passed to .Rmd! --->") - +getwd() load(objects) - +output_dir=dirname(objects) # concatenating outlier names to a single string -out3 <- triple_outliers %>% paste(.,collapse = ", ") out2 <- double_outliers %>% paste(.,collapse = ", ") out1 <- single_outliers %>% paste(.,collapse = ", ") -if(nchar(out3)<2) out3 <- "None" if(nchar(out2)<2) out2 <- "None" if(nchar(out1)<2) out1 <- "None" - # colnames(mapping_file) <- c("full_name","percentage") mean_mapping <- mapping_file[1,] mapping_file <- mapping_file[2:nrow(mapping_file),] sample_names <- rownames(per_cell_table) -mapping_file <- sample_names %>% - sapply(function(id) grep(id, mapping_file[[1]])) %>% - unlist %>% mapping_file[.,] + +# when quant dir is fastqname: +# mapping_file <- sample_names %>% +# sapply(function(id) grep(id, mapping_file[[1]])) %>% +# unlist %>% mapping_file[.,] + +# mapping_file <- sapply(sample_names, +# function(id) mapping_file[[1]] %in% id) %>% apply(1,which) %>% mapping_file[.,] + +mapping_file <- sapply(sample_names, + function(id) mapping_file[,1] %in% id %>% which()) %>% as.vector() %>% mapping_file[.,] + mapping_file$sample <- sample_names + mapping_file$is_cell_control <- per_cell_table$is_cell_control +is_cell_control <- ifelse(sum(mapping_file$is_cell_control)>0, T, F) mapping_file$is_cell_control <- mapping_file$is_cell_control %>% ifelse("Control samples", "Experiment samples") - plot_map_percent <- ggplot(mapping_file, aes(x=percentage)) + geom_histogram(binwidth = 1, color="darkgreen", fill="lightblue") + - facet_wrap( ~ is_cell_control, ncol=1) + theme_bw() + - labs(title = paste0("Average read mapping rate of ",mean_mapping[2],"%")) - -is_plate <- ifelse(plate_id=="all",F,T) -``` - + labs(title = sprintf("Average read mapping rate of %.2f%%", mean_mapping[2])) +if (is_cell_control) plot_map_percent <- plot_map_percent+facet_wrap( ~ is_cell_control, ncol=1) +is_plate <- ifelse(plate_id=="all",F,T) +plate_id <- paste0(as.character(unique(per_cell_table$plate_id)), collapse = ',') +is_ercc=ifelse(nrow(ercc_table)==0, F, T) +``` -The data in this document is generated for plate `r plate_id` in experiment `r experiment_id`. +The data in this document is generated for plate `r plate_id`. Additional information regarding quality control can be found in the same folder as this report: - -* QC metrics and outlier information per sample -* ERCC counts for each of the ERCCs per sample -* alignment percentages per sample -* plots used in this document + +- QC metrics and outlier information per sample +- alignment percentages per sample +- plots used in this document The kallisto quantifications for each of the samples and merged expression matrices (estimated counts by default) are in the neighbouring directory. Tools used in the quality control pipeline are: - - * kallisto 0.45.1 - * R-3.5.2 - * R markdown - * R packages: scater, ggplot2, dplyr, knitr, rjson - * nextflow 19.04.1 - * singularity 2.4.2 + +- kallisto 0.48.0 +- R 4.1.2 +- R markdown +- R packages: scater 1.28.0, ggplot2, dplyr, knitr, rjson +- nextflow +- singularity ## Read mapping -Reads were mapped with the kallisto pseudo-aligner (version 0.45.1) to the reference genome with added ERCC RNA spike-in mix 1. +Reads were mapped with the kallisto pseudo-aligner to the reference genome. Percentage of reads that map is shown for all the samples. Samples labelled as control are separated for comparison. @@ -82,15 +98,20 @@ Percentage of reads that map is shown for all the samples. Samples labelled as c plot(plot_map_percent) ``` -\newpage +\newpage -## Cumulative distribution of expression +```{r scatter_mapping_rate} +for (pidx in 1:nrow(summary(plot_mapping_rate))){ + plot(plot_mapping_rate[[pidx]]) +} +``` +\newpage -The following plot shows, for the transcripts with the highest expression levels (top 1-300) for the sample, proportion of the sample's library (y-axis) covered by which number of those transcripts (x-axis). +## Cumulative distribution of expression +The following plot shows the proportion of the library (y-axis) covered by the top 300 most expressed transcripts (x-axis) for the given sample. -Distributions which rise high quickly are samples which are dominated by low number of transcripts while the ones having a less steep rise have counts more evenly distributed. -Wells with less diverse count distribution are more similar to empty wells and might indicate lower quality or damaged cells. +Distributions which rise high quickly are samples which are dominated by low number of transcripts while the ones having a less steep rise have counts more evenly distributed. Wells with less diverse count distribution are more similar to empty wells and might indicate lower quality or damaged cells. ```{r cumulative_distrib} plot(plot_cumulative_dist) @@ -100,10 +121,7 @@ plot(plot_cumulative_dist) ## Most highly expressed transcripts -Shown are top 50 features by the proportion of counts they take in all samples. -Feature names (as Ensembl transcripts or annotated control features) denote samples on the y-axis with the percentage of counts they capture on the x-axis. Circle shows the proportion across all samples with proportion for each of samples shown on the same line. - -If applicable, spike-ins (ERCC) and mitochondrial transcripts are labelled. Their high percentages could be indicative of poor samples although some samples have a naturally higher percentage. +Shown are top 50 features by the proportion of counts they take in all samples. Feature names (as Ensembl transcripts or annotated control features) denote samples on the y-axis with the percentage of counts they capture on the x-axis. A circle shows the mean proportion across all samples with proportion for each of samples shown on the same line. ```{r highest_expression} plot(plot_highest_expression) @@ -119,24 +137,50 @@ The relationship between the two variables is typically sigmoidal looking. The vertical dashed line is the median of expression levels across the samples. The horizontal dashed line is at 50% of expression presence - dots above are transcripts which are expressed in more than 50% of the samples. - - -```{r expression_vs_mean} -plot(plot_expr_vs_mean) +```{r include_png} +if (length(unique(per_cell_table$plate_id))==1){ + tmp_plateid <- unique(per_cell_table$plate_id) +} else { + tmp_plateid <- 'all' +} + +# this tries to dereference the png symlink but doesn't work. +if (F){ + is.symlink <- function(paths) isTRUE(nzchar(Sys.readlink(paths), keepNA=TRUE)) + getwd() + pngfile=paste0('rename_QC_meanexp_vs_freq',tmp_plateid,'.png') + if (file.exists(pngfile)) { + sprintf('1 pngfile exist %s', pngfile) + } else { + sprintf('1 pngfile exist %s', pngfile) + } + if (is.symlink(pngfile)) { + pngfile <- Sys.readlink(pngfile) + } + if (file.exists(pngfile)) { + sprintf('2 pngfile exist %s', pngfile) + } else { + sprintf('2 pngfile exist %s', pngfile) + } +} + +# pngfile=paste0('../QC_meanexp_vs_freq',tmp_plateid,'.png') #wu +#![test string](`r pngfile`) +#![test string](/Volumes/core-bioinformatics/analysis/CB-PPBFX-1067_Claudia_Ribeiro_de_Almeida_BI_CR_ENQ-5220_A_01_Smart-Seq2_QC/Analysis/scqc_reqs-0.2.2/run2/qc_dir/QC_meanexp_vs_freqR0881-P0004.png) +knitr::include_graphics(pngfile) ``` + \newpage ## Scatterplots -Following scatterplots show, for all of the samples and their total counts, their transcript number, proportion of control transcripts (mitochondrial and ERCC) and proportion of mitochondrial transcript. +Following scatterplots show, for all of the samples and their total counts, their transcript number, proportion of mitochondrial transcript and proportion of ERCC transcript. ```{r featurenumber_vs_counts} -plot(plot_featurenum_vs_counts) -``` - -```{r fctrl_scatterplot} -plot(plot_fctrl_scatter) +for (pidx in 1:nrow(summary(plot_featurenum_vs_counts))) { + plot(plot_featurenum_vs_counts[[pidx]]) +} ``` ```{r mito_scatterplot, echo=FALSE} @@ -144,7 +188,9 @@ plot(plot_mito_scatter) ``` -\newpage +```{r ercc_scatter} +plot(plot_ercc_scatter) +``` ```{r conditional_plate_position_chunk, echo=FALSE, results='asis', eval=is_plate} cat("## Plate position plots @@ -152,66 +198,71 @@ cat("## Plate position plots For each of the samples, their position on the plate and the corresponding metric (counts, percentage of mitochondrial counts, percentage of ERCC/spike-in counts) are shown.") ``` - - ```{r plate_counts, eval=is_plate} plot(plot_plate_counts) ``` -\newpage - ```{r plate_mitochondrial, eval=is_plate} plot(plot_plate_mito) ``` - - ```{r plate_ercc, eval=is_plate} plot(plot_plate_ercc) ``` -\newpage +## Violin plots +```{r plot_violin} +for (pidx in 1:nrow(summary(plot_violin_scatter))) { + plot(plot_violin_scatter[[pidx]]) +} +``` +\newpage ## Dimensionality reductions Dimensionality reductions summarise the large feature space with a smaller number of dimensions aiming to capture most of the variance in the data. -Principal component analysis (PCA) and t-SNE are one of the most common methods. -PCA makes new dimensions by trying to capture as much as variance as possible in the top ones while t-SNE tries to place the samples in 2 dimensions in a way which best captures the similarities and differences of the samples. +Principal component analysis (PCA) and t-SNE are one of the most common methods. PCA makes new dimensions by trying to capture as much as variance as possible in the top ones, while t-SNE tries to place the samples in 2 dimensions in a way which best captures the similarities and differences of the samples. PCA/t-SNE dimensions are derived from the expression profiles of all the transcripts and visualised in the following scatterplots. -Samples generally similar to each other will be closer. +Samples similar in expression profile will be plotted closer together. ### PCA -```{r pca} -plot(plot_pca) +```{r pca_GEX} +plot(plot_pca[[1]]) ``` -\newpage - -### t-SNE +### UMAP -```{r tsne} -plot(plot_tsne) +```{r UMAP} +# plot(plot_pca) +for (pidx in 2:nrow(summary(plot_pca))){ + plot(plot_pca[[pidx]]) +} ``` -## Outliers and key metrics per sample +### UMAP on MT/ERCC -Accompanying spreadsheet (`Per_sample_key_metrics.tsv`) contains the value for some of the most important metrics, position on the plate, control information and whether or not the sample is considered outlier in the population when it comes to number of counts, different features (transcripts) and percentage of counts which are mitochondrial or spike-in. +```{r UMAP_ctr} +for (pidx in 1:nrow(summary(plot_pca_ctr))){ + plot(plot_pca_ctr[[pidx]]) +} +``` +\newpage -If a sample is top or bottom 10%, it is considered as an outlier. +## Outliers and key metrics per sample -Being an outlier on one metric is unlikely to be of much concern, but if the same sample is an outlier across all 3 it could be a sign of an unviable sample. +The accompanying spreadsheet (`Per_sample_key_metrics.tsv`) contains the value for some of the most important metrics, position on the plate, control information and whether or not the sample is considered an outlier in the population when it comes to mapping rate, and percentage of counts which are mitochondrial. -Following samples have been marked as **outliers**. +If a sample's average read mapping rate is below 50%, or the mitochondrial percentage is over 10%, the sample is consider as an outlier. -On all 3 outlier metrics: +Being an outlier on one metric is unlikely to be of much concern, but if the same sample is an outlier in both metrics, it could be a sign of an unviable sample. -`r out3` +The following samples have been marked as **outliers**. For 2 outlier metrics: @@ -221,16 +272,17 @@ For 2 outlier metrics: Exact information for the metrics used in the generation of this document can be found in the accompanying table - `Per_sample_key_metrics.tsv` -By default, it contains the following information: - -* Plate position -* Outlier status for the number of counts, features and proportion of mitochondrial/spike-in counts -* Outlier hits - the number of times that sample has been labeled as an outlier -* Total counts -* Total features (transcripts) -* Percentage of counts belonging to mitochondrial transcripts -* Percentage of counts belonging to spike-ins -* Percentage of counts covered by top 100 features - - - +By default, it contains the following information: + +- plate_id +- fastqname +- plate_position +- outlier_hits - the number of times that sample has been labeled as an outlier +- outlier_pct_MT - TRUE if a sample meets the outlier metric on mitochondrial percentage +- outlier_mapping reate - TRUE if a sample meets the outlier metric on average read mapping rate +- sum - total counts +- detected - total expressed features (transcripts) +- subsets_mitochondrial_percent - Percentage of counts belonging to mitochondrial transcripts +- subsets_ERCC_percent - Percentage of counts belonging to spike-ins +- map_rate - average read mapping rate +- is_cell_control diff --git a/Scripts/est_counts_tx2gene.R b/Scripts/est_counts_tx2gene.R index 6b7678f..cd3a0f3 100644 --- a/Scripts/est_counts_tx2gene.R +++ b/Scripts/est_counts_tx2gene.R @@ -1,69 +1,87 @@ -# if run as part of the QC pipeline -# output directory is set within NF process (to quantifications dir) +#library(biomaRt) +# library(tidyverse) +library(dplyr) -library(biomaRt) -library(tidyverse) - - -tx2gene_counts <- function(counts_table_location, outloc, species="Hsapiens", - hdb="../References/human_mart_db.rds", - mdb="../References/mouse_mart_db.rds"){ - +tx2gene_counts <- function(counts_table_location, output_tsv, species="Bos_taurus", + dbfile="/ei/cb/development/lany/CB-Iain_Macaulay_EI_CU_ENQ-5072_A_01/Scripts/scqc/References/btaurus_gene_ensembl_mart_db.rds") +{ c_matrix <- read.table(counts_table_location, header = T, sep='\t', check.names = F) - if(species=="Hsapiens"){ - mart_species <- "hsapiens_gene_ensembl" - db <- readRDS(hdb) - } else if(species=="Mmusculus"){ - mart_species <- "mmusculus_gene_ensembl" - db <- readRDS(mdb) + if(species=="Hsapiens" || species=="Bos_taurus"){ + # mart_species <- "hsapiens_gene_ensembl" + db <- readRDS(dbfile) } else { - print(species) - stop("<--- Invalid species string! --->") + mapping_matrix <- read.table(dbfile, header=F, sep='\t', check.names=F,stringsAsFactors = F) + colnames(mapping_matrix) <- c('transcript', 'gene') } - # mart_obj <- useMart("ensembl", dataset = mart_species) - # db <- getBM(c("ensembl_gene_id","ensembl_transcript_id_version", - # "external_transcript_name", "external_gene_name"), mart=mart_obj) - # matching rownames to biomart gene names - ids <- rownames(c_matrix) %>% gsub("\\|.*$","",.) - c_matrix$gene_name <- db[match(ids, db$ensembl_transcript_id_version),]$external_gene_name - - # removing transcripts without an associated gene name - c_matrix <- c_matrix[-which(is.na(c_matrix$gene_name)),] + if (species=="Hsapiens") { + # rowname: ENST00000456328.2|ENSG00000223972.5|OTTHUMG00000000961.2|OTTHUMT00000362751.1|DDX11L1-202|DDX11L1|1657|processed_transcript| + ids <- rownames(c_matrix) %>% gsub("\\|.*$","",.) + c_matrix$gene_name <- db[match(ids, db$ensembl_transcript_id_version),]$external_gene_name + # removing transcripts without an associated gene name + c_matrix <- c_matrix[-which(is.na(c_matrix$gene_name)),] + } else if (species=="Bos_taurus"){ + # rowname: "transcript:ENSBTAT00000007786" ; ids: ENSBTAT00000007786 + ids <- rownames(c_matrix) %>% gsub("transcript:","",.) + # head(db.cow$ensembl_transcript_id_version) + # [1] "ENSBTAT00000008737.6" wanna remove ".6" + tmp.ensembl_transcript_id_version <- str_replace_all(db$ensembl_transcript_id_version, + "\\.\\d+",replacement="") + # c_matrix$gene_name <- db.cow[match(ids, db.cow$ensembl_transcript_id_version),]$external_gene_name + c_matrix$gene_name <- db[match(ids, tmp.ensembl_transcript_id_version),]$external_gene_name + # removing transcripts without an associated gene name + c_matrix <- c_matrix[-which(c_matrix$gene_name==""),] + } else { + # c_matrix rowname: "transcript:ENSBTAT00000007786" ; ids: ENSBTAT00000007786 + ids <- rownames(c_matrix) %>% gsub("transcript:","",.) + c_matrix$gene_name <- mapping_matrix[match(ids, mapping_matrix$transcript),]$gene + # removing transcripts without an associated gene name + if (length(which(c_matrix$gene_name==""))>0){ + c_matrix <- c_matrix[-which(c_matrix$gene_name==""),] + } + } # R magic gene_level_matrix <- aggregate(. ~ gene_name, c_matrix, sum) rownames(gene_level_matrix) <- gene_level_matrix$gene_name - write.table(gene_level_matrix[,-1], paste0(outloc,"plates_as_genelevel.tsv"), sep='\t') + # write.table(gene_level_matrix[,-1], paste0(outloc,"plates_as_genelevel.tsv"), sep='\t') + write.table(gene_level_matrix[,-1], output_tsv, sep='\t') #wu } if(sys.nframe()==0){ - + # est_counts_tx2gene.lany.R ./quants_dir/est_countsCU5DAY0_matrix.tsv ./quants_dir/ Bos_taurus \ + # ./References/btaurus_gene_ensembl_mart_db.rds args=commandArgs(trailingOnly=T) if(!file.exists(args[1])) stop(paste0("<--- Matrix file ('",args[1],"') not found! --->")) - if(!file.exists(args[2])) - stop(paste0("<--- Tx2g output location ('",args[2],"') not found! --->")) - if(length(args)<2) stop("<--- Missing arguments in tx2g call! --->") - - if(length(args)>=3){ + + if(length(args)<3) + stop("<--- Missing species tx2g call! --->") + + # if(length(args)>=3){ + # species <- args[3] + # tx2gene_counts(args[1], args[2], species) + # } else { + # tx2gene_counts(args[1], args[2]) + # } + + if(length(args)>=4){ species <- args[3] - tx2gene_counts(args[1], args[2], species) + dbfile <- args[4] + tx2gene_counts(args[1], args[2], species, dbfile) } else { - tx2gene_counts(args[1], args[2]) + tx2gene_counts(args[1], args[2], species) } - } - diff --git a/Scripts/generating_biomart_db.R b/Scripts/generating_biomart_db.R deleted file mode 100644 index 442ba41..0000000 --- a/Scripts/generating_biomart_db.R +++ /dev/null @@ -1,28 +0,0 @@ -# this script requires internet connection - -library(tidyverse) -library(biomaRt) - -# human:"hsapiens_gene_ensembl" -# mouse:"mmusculus_gene_ensembl" - -make_biomart_db <- function(mart_species="hsapiens_gene_ensembl", - biomart_attributes=c("ensembl_gene_id","ensembl_transcript_id_version", - "external_transcript_name", "external_gene_name")){ - - mart_obj <- useMart("ensembl", dataset = mart_species) - db <- getBM(biomart_attributes, mart=mart_obj) - saveRDS(db,paste(mart_species, "mart","db.rds", sep = "_")) -} - -if(sys.nframe()==0){ - args=commandArgs(trailingOnly=T) - - if(length(args)<1) - stop("No specified species!") - if(length(args)<2){ - make_biomart_db(args[1]) - } else{ - make_biomart_db(args[1], args[2]) - } -} \ No newline at end of file diff --git a/Scripts/kallisto_mapping_scrape.R b/Scripts/kallisto_mapping_scrape.R index 39b24a1..0f3a724 100644 --- a/Scripts/kallisto_mapping_scrape.R +++ b/Scripts/kallisto_mapping_scrape.R @@ -1,49 +1,49 @@ -library(dplyr) -library(rjson) - -#' Extracts pseudoalignment percentages as a table of sample names and a mean -#' from a folder with all the sample quantifications subfolders -#' -#' @param quant_superfolder Name of the main folder. Typically intermediate output of the QC pipeline. -#' @param output_name Name of the file containing alignment percentages and their mean. -#' Defaults to 'percent_pseudoaligned.txt' -#' @param metric Defaults to 'p_pseudoaligned'. If not found in 'run_info.json', it will throw an error/ -#' @param qc_name Defaults to '/qc'. Name that needs to be ignored in the folder. -#' If result of the QC pipeline, it's probably there. -#' -#' @return Nothing. Writes a small file. -#' @export -#' -#' @examples -kallisto_mapping_scrape <- function(quant_superfolder, output_name="percent_pseudoaligned.txt", - metric="p_pseudoaligned", qc_name="/qc"){ - paths <- list.files(quant_superfolder, full.names = T) - paths <- paths %>% dir.exists %>% paths[.] - qc_fold <- grep(qc_name, paths) - if(length(qc_fold)>0) - paths <- paths[-qc_fold] - json_files <- paste0(paths, "/run_info.json") - - sapply(json_files, function(jf) paste(readLines(jf), collapse = "") %>% - fromJSON() %>% .[[metric]]) -> p_align_per_well - - names(p_align_per_well) %>% - substring(1,nchar(.)-nchar("/run_info.json")) %>% - gsub("^.*/","",.) -> names(p_align_per_well) - - p_align_per_well <- c("mean"=mean(p_align_per_well),p_align_per_well) - - write.table(p_align_per_well %>% as.data.frame, output_name, col.names = F) -} - - -if(sys.nframe()==0){ - args=commandArgs(trailingOnly=T) - if(!file.exists(args[1])) - stop(">>> Folder location not found! <<<") - if(length(args)<2) - stop(">>> Output name not provided! <<<") - runinfo_metric <- ifelse(length(args)>2, args[3],"p_pseudoaligned") - - kallisto_mapping_scrape(quant_superfolder=args[1], output_name=args[2], metric=runinfo_metric) +library(dplyr) +library(rjson) + +#' Extracts pseudoalignment percentages as a table of sample names and a mean +#' from a folder with all the sample quantifications subfolders +#' +#' @param quant_superfolder Name of the main folder. Typically intermediate output of the QC pipeline. +#' @param output_name Name of the file containing alignment percentages and their mean. +#' Defaults to 'percent_pseudoaligned.txt' +#' @param metric Defaults to 'p_pseudoaligned'. If not found in 'run_info.json', it will throw an error/ +#' @param qc_name Defaults to '/qc'. Name that needs to be ignored in the folder. +#' If result of the QC pipeline, it's probably there. +#' +#' @return Nothing. Writes a small file. +#' @export +#' +#' @examples +kallisto_mapping_scrape <- function(quant_superfolder, output_name="percent_pseudoaligned.txt", + metric="p_pseudoaligned", qc_name="/qc"){ + paths <- list.files(quant_superfolder, full.names = T) + paths <- paths %>% dir.exists %>% paths[.] + qc_fold <- grep(qc_name, paths) + if(length(qc_fold)>0) + paths <- paths[-qc_fold] + json_files <- paste0(paths, "/run_info.json") + + sapply(json_files, function(jf) paste(readLines(jf), collapse = "") %>% + fromJSON() %>% .[[metric]]) -> p_align_per_well + + names(p_align_per_well) %>% + substring(1,nchar(.)-nchar("/run_info.json")) %>% + gsub("^.*/","",.) -> names(p_align_per_well) + + p_align_per_well <- c("mean"=mean(p_align_per_well),p_align_per_well) + + write.table(p_align_per_well %>% as.data.frame, output_name, col.names = F) +} + + +if(sys.nframe()==0){ + args=commandArgs(trailingOnly=T) + if(!file.exists(args[1])) + stop(">>> Folder location not found! <<<") + if(length(args)<2) + stop(">>> Output name not provided! <<<") + runinfo_metric <- ifelse(length(args)>2, args[3],"p_pseudoaligned") + + kallisto_mapping_scrape(quant_superfolder=args[1], output_name=args[2], metric=runinfo_metric) } \ No newline at end of file diff --git a/Scripts/merge_kallisto_quant.R b/Scripts/merge_kallisto_quant.R index c1e2c68..890bf67 100644 --- a/Scripts/merge_kallisto_quant.R +++ b/Scripts/merge_kallisto_quant.R @@ -12,7 +12,7 @@ #' #' @examples merge_kallisto_quant <- function(folders_loc="~/AThaliana/kallisto_q/", - metric="tpm", plate_id=NULL){ + metric="tpm", plate_id=NULL, plateqc_dir=NULL){ kquant_folds <- list.dirs(folders_loc, full.names = F) kquant_folds <- unique(gsub("/.*$","",kquant_folds)) @@ -26,7 +26,8 @@ merge_kallisto_quant <- function(folders_loc="~/AThaliana/kallisto_q/", kquant_folds <- grep(plate_id, kquant_folds, value = T) } sample_names <- kquant_folds - abundance_paths <- paste0(folders_loc,kquant_folds, "/abundance.tsv") + # abundance_paths <- paste0(folders_loc,kquant_folds, "/abundance.tsv") + abundance_paths <- file.path(folders_loc, kquant_folds, "abundance.tsv") #wu singleton <- read.table(abundance_paths[1], header=T) index <- which(colnames(singleton)==metric) @@ -54,8 +55,14 @@ merge_kallisto_quant <- function(folders_loc="~/AThaliana/kallisto_q/", plate_label <- as.character(plate_id) } - write.table(tpm_matrix, paste0(folders_loc,metric, - plate_label,"_matrix.tsv"), sep = "\t") + # write.table(tpm_matrix, paste0(folders_loc,metric, + # plate_label,"_matrix.tsv"), sep = "\t") + if (is.null(plateqc_dir)) { + matrix_path = file.path(folders_loc, paste0(metric, plate_label,"_matrix.tsv")) #wu + } else { + matrix_path = file.path(plateqc_dir, paste0(metric, plate_label,"_matrix.tsv")) #wu + } + write.table(tpm_matrix, matrix_path, sep = "\t") #wu } if(sys.nframe()==0){ @@ -64,8 +71,8 @@ if(sys.nframe()==0){ stop(">>> Folders location not found! <<<") column_metric <- ifelse(length(args)>1, args[2],"tpm") pid <- ifelse(length(args)>2, args[3], NULL) - - merge_kallisto_quant(args[1], column_metric, pid) + plateqc_dir <- ifelse(length(args)>3, args[4], NULL) + merge_kallisto_quant(args[1], column_metric, pid, plateqc_dir) } diff --git a/Scripts/plate_merge.R b/Scripts/plate_merge.R index b216ac7..d7691ef 100644 --- a/Scripts/plate_merge.R +++ b/Scripts/plate_merge.R @@ -6,13 +6,23 @@ library(dplyr) #' @export #' #' @examples -plate_merge <- function(outdir, id_list){ - id_list <- id_list %>% strsplit(', ') %>% unlist %>% - gsub("^.*_(.*)\\..*$","\\1",.) %>% paste0("_matrix.tsv") +plate_merge <- function(outdir, q_merge_col='est_counts', id_list, pipeline='snakemake'){ + # v1: id_list + # > id_list + # [1] "[/ei/cb/development/lany/CB-Iain_Macaulay_EI_CU_ENQ-5072_A_01/Analysis/scqc_reqs-0.2.3/test2.4plate/work/fa/2b420fbaa97dd8af0244eb9acca1ba/Finished_CU5DAY0.txt, /ei/cb/development/lany/CB-Iain_Macaulay_EI_CU_ENQ-5072_A_01/Analysis/scqc_reqs-0.2.3/test2.4plate/work/9d/2fe712a80b3945ca6c51cd0ded05e4/Finished_CU7DAY0.txt, /ei/cb/development/lany/CB-Iain_Macaulay_EI_CU_ENQ-5072_A_01/Analysis/scqc_reqs-0.2.3/test2.4plate/work/87/4592ac35208e669b988678ded0f1b7/Finished_CU5DAY7.txt, /ei/cb/development/lany/CB-Iain_Macaulay_EI_CU_ENQ-5072_A_01/Analysis/scqc_reqs-0.2.3/test2.4plate/work/b8/3313f5215f177dcf91ecd90816882f/Finished_CU7DAY7.txt]" + # + # id_list <- id_list %>% strsplit(' ') %>% unlist %>% gsub('\\[','',.) %>% gsub('\\]','',.) %>% basename() %>% + # sub('\\..*$', '',.) %>% gsub('^.*_','',.) %>% paste0(q_merge_col,.,"_matrix.tsv") + # file_list <- id_list %>% strsplit(' ') %>% unlist %>% gsub('\\[','',.) %>% gsub('\\]','',.) %>% file.path + if (pipeline=='snakemake') { + file_list <- id_list %>% strsplit(" ")%>% unlist%>%gsub(',',"",.) + } + if (pipeline=='nextflow') { + file_list <- id_list %>% strsplit(' ') %>% unlist %>% gsub('\\[','',.) %>% + gsub('\\]','',.) %>% gsub(',','',.) + } - quant_dir_content <- list.files(outdir, full.names = T) - file_list <- sapply(id_list, function(p) grep(p, quant_dir_content, value = T)) - class(file_list) + # file_list <- file.path(outdir,id_list) tables_list <- lapply(file_list, FUN=function(files){read.table(files, check.names = F, @@ -23,7 +33,10 @@ plate_merge <- function(outdir, id_list){ final_matrix <- do.call("cbind", tables_list) - write.table(final_matrix, paste0(outdir, "all_plates.tsv"), sep = '\t') + #write.table(final_matrix, paste0(outdir, "all_plates.tsv"), sep = '\t') + # write.table(final_matrix, paste0(outdir, q_merge_col, "all_plates.tsv"), sep = '\t') + outfile = file.path(outdir, paste0(q_merge_col, "all_plates.tsv")) #wu + write.table(final_matrix, outfile, sep = '\t') #wu } @@ -38,17 +51,20 @@ if(sys.nframe()==0){ if(!file.exists(args[1])) stop(paste0("Matrix file ('",args[1],"') not found!")) - if(length(args)>=2){ + if(length(args)>=3){ outloc <- args[1] - ids <- args[2] if(!file.exists(outloc)){ warning(paste0("Output directory ('",outloc,"') does not exist!"), "\nCreating the directory...") system(paste("mkdir -p",outloc)) } - } else { - stop(">>> Missing args! <<<") - } - - plate_merge(args[1], args[2]) -} \ No newline at end of file + + if (length(args)==3){ + plate_merge(args[1], args[2], args[3]) + } else if (length(args)==4){ + plate_merge(args[1], args[2], args[3], args[4]) + } + } else stop(">>> Missing args! <<<") +} + + diff --git a/Scripts/scqc_from_matrix.R b/Scripts/scqc_from_matrix.R deleted file mode 100644 index dcfb1b6..0000000 --- a/Scripts/scqc_from_matrix.R +++ /dev/null @@ -1,315 +0,0 @@ - -library(dplyr) -library(scater) - -#' Running single-cell QC on a tpm/count matrix -#' -#' @param tsv_location Expression matrix -#' @param output_location Where to store the QC files. -#' @param plate_info 0 for a single plate like the first GP testrun, -#' 1 for Anita/Geoff multi-plate, -#' 2 (default) for sample_sheet provided ones -#' @param sheet_file Sample sheet with plate position, control status and sample ID information -#' If missing, plate position will try to be inferred from the .fastq file names -#' @param mt_file Mitochondrial genes. If not provided, the ones starting with "MT-" or -#' "mt-" will be considered mitochondrial (works only for human and mouse) -#' -#' @return None. Generates files (pdf plots, tsv tables). -#' @export -#' -#' @examples -scqc_from_tsv <- function(tsv_location, output_location="./", plate_info=2, - sheet_file=NULL, mt_file=NULL) { - #tsv will be est_counts or tinds_cellctrlpm matrix transcript X sample - #but counts still used as label in th SCE object - counts_df <- read.table(tsv_location, header = T, check.names = F) - - experiment_id <- gsub("/[A-z|_|\\.]+$","",tsv_location) %>% - gsub("^.*/","",.) - plate_id <- "1" - - # using the sheet_file if provided - if(!is.null(sheet_file)){ - samplesheet <- read.csv(sheet_file) - # samplesheet column names assumed standardised - - row_ids <- sapply(samplesheet$unique_sample_id_suffix, - function(id) grepl(paste0(id, "_"), colnames(counts_df))) %>% apply(1,which) - - # above will cause errors if some ids a subset of others (e.g. xyz1 and xyz12) - # in which case the row_ids will be a list - - if(class(row_ids)=="list"){ - stop(">>> Error with sample IDs. Multiple matches for a filename. - Possibly because some IDs a subset of others. <<<") - } - - well_id <- samplesheet[row_ids,]$well - cell_number <- samplesheet[row_ids,]$number_of_cells - inds_cellctrl <- which(samplesheet[row_ids,]$control==T) - - # could this not be unique? - # one plate, multiple experiments? - experiment_id <- samplesheet[row_ids,]$experiment %>% unique - - plate_id <- samplesheet[row_ids,]$plate_id %>% unique - - colnames(counts_df) <- samplesheet[row_ids,]$unique_sample_id_suffix - - # cell_type and cell_phenotype probably best not too always excpect? - } - #print(plate_id) - if(length(plate_id)>1){ - plate_id <- "all" - } - - #feature and cell controls - inds_ercc <- counts_df %>% rownames() %>% grep("^ERCC",.) - inds_mito <- counts_df %>% rownames() %>% grep("\\|MT-",., ignore.case = T) #works only on HS - if(!exists("inds_cellctrl")) inds_cellctrl <- numeric(0) - - long_names <- counts_df[-inds_ercc,] %>% rownames() - #takes a while - short_names <- sapply(long_names, function(s) strsplit(s,"\\|") %>% .[[1]] %>% .[1]) %>% as.vector - rownames(counts_df)[-inds_ercc] <- short_names - - mito_names <- long_names[inds_mito] %>% strsplit("\\|") %>% sapply(function(x) x[5]) %>% as.vector - rownames(counts_df)[inds_mito] <- mito_names - - if(!is.null(mt_file)){ - mito_names <- readRDS(mt_file) - inds_mito <- counts_df %>% rownames %>% - match(mito_names, .) %>% na.omit() - } - - - sce <- SingleCellExperiment(assays=list(counts=counts_df %>% as.matrix)) - sce <- calculateQCMetrics(sce, - feature_controls = list(ERCC = inds_ercc, mitochondrial = inds_mito), - cell_controls = list(Controls = inds_cellctrl) - ) - - rm(counts_df) - setwd(output_location) - - - - - #total count across genes - plot_highest_expression <- plotHighestExprs(sce, exprs_values = "counts") - #mean expression vs frequncy expressed - plot_expr_vs_mean <- plotExprsFreqVsMean(sce, exprs_values = "counts", show_smooth = F) - #cumulative distribution plot - - cellctrl_flag <- NULL - if(length(inds_cellctrl)>0){ - cellctrl_flag <- "is_cell_control" - } - - plot_cumulative_dist <- plotScater(sce, nfeatures = 300, exprs_values = "counts", - colour_by = cellctrl_flag) - - #%MT - - plot_mito_scatter <- plotColData(sce, x = "total_features_by_counts", - y = "pct_counts_mitochondrial", - colour_by = cellctrl_flag) + - theme(legend.position = "top") + xlab("total_features") + - labs(title="Mitochondrial expression percentage ~ total features") - #%ERCC - plot_ercc_scatter <- plotColData(sce, x = "total_features_by_counts", - y = "pct_counts_ERCC", - colour_by = cellctrl_flag) + - theme(legend.position = "top") + xlab("total_features") + - labs(title="Spike-in expression percentage ~ total features") - #counts across cells - #% any feature control - plot_fctrl_scatter <- plotColData(sce, x = "total_features_by_counts", - y = "pct_counts_feature_control", - colour_by = cellctrl_flag) + - xlab("total_features") + - #stat_smooth(method = "lm", se = FALSE, size = 1.5, fullrange = TRUE) + - ggtitle(paste("Out of", sce@assays$data$counts %>% nrow, "transcripts")) - - #counts ~ total - plot_featurenum_vs_counts <- plotColData(sce, x = "log10_total_counts", - y = "total_features_by_counts", - colour_by = cellctrl_flag) + - theme(legend.position = "top") + xlab("log_total_counts") + ylab("total_features") + - labs(title="Total features ~ total counts (log scale)") - - pdf(paste0("QC_scatterplots_",plate_id,".pdf"), pointsize = 12) - plot_featurenum_vs_counts %>% plot - plot_cumulative_dist %>% plot - plot_expr_vs_mean %>% plot - plot_highest_expression %>% plot - - plot(plot_fctrl_scatter) - plot(plot_mito_scatter) - plot(plot_ercc_scatter) - dev.off() - - - #0 - 1st 2 GP test runs naming - #1 - Anita/Geoff naming - #2 - run 3 (Jim's samplesheet) GP naming - sce$Cell <- sce@assays$data$counts %>% colnames - if(exists("well_id")) sce$plate_position <- well_id - if(plate_info==0){ - sce$plate_position <- sce$Cell %>% gsub("^([[:alnum:]]+)\\_.*$","\\1",.) %>% - {ifelse(nchar(.)==2,gsub("(.)(.)","\\10\\2",.),.)} - } else if (plate_info==1){ - c_string <- sce$Cell - sce$plate_position <- c_string %>% regexec("plate",., ignore.case = T) %>% - .[[1]] %>% .[1] %>% `+`(nchar("plateX")) %>% - substring(c_string, .) %>% #same format as standard 1 plate GP now - gsub("^([[:alnum:]]+)\\_.*$","\\1",.) %>% - {ifelse(nchar(.)==2,gsub("(.)(.)","\\10\\2",.),.)} - - } else if(plate_info==2){ - sce$plate_position <- well_id - } else { - stop("plate_info error") - } - - plot_plate_mito <- plotPlatePosition(sce, - colour_by = "pct_counts_mitochondrial", - by_exprs_values = "counts", - point_size = 9) + - guides(fill="colorbar") + theme(legend.position = "top") - plot_plate_ercc <- plotPlatePosition(sce, - colour_by = "pct_counts_ERCC", - by_exprs_values = "counts", - point_size = 9) + - guides(fill="colorbar") + theme(legend.position = "top") - plot_plate_counts <- plotPlatePosition(sce, - colour_by = "log10_total_counts", - by_exprs_values = "counts", - point_size = 9) + guides(fill="colorbar") - # counts per well - pdf(paste0("Plate_position_plots_",plate_id,".pdf"), pointsize = 12) - plot(plot_plate_counts) - plot(plot_plate_ercc) - plot(plot_plate_mito) - dev.off() - - # ERCC mol - # >add %ERCC - ercc_counts <- sce@assays$data$counts[inds_ercc,] %>% as.data.frame(stringsAsFactors=F) - colnames(ercc_counts) <- ercc_counts %>% colnames() %>% gsub("_.*$","",.) - ercc_counts$All_samples <- rowSums(ercc_counts) - ercc_counts$ERCC <- rownames(ercc_counts) - df_col <- ncol(ercc_counts) - - ercc_table <- ercc_counts[,c(df_col, df_col-1, 1:(df_col-2))] - - write.table(ercc_table, paste0("Sample_counts_across_ERCCs_",plate_id,".tsv"), - sep='\t', row.names = F) - - # sce$cell_type <- sce %>% colData() %>% rownames %>% - # match(samplesheet$unique_sample_id_suffix) %>% - # samplesheet[.,] %>% `$`(cell_type) - - sce <- normalize(sce) - sce <- runPCA(sce, ncomponents=20, detect_outliers=T) - sce <- runTSNE(sce) - - control_shape <- NULL - if(length(inds_cellctrl)) control_shape <- "is_cell_control" - - control_scale <- NULL - if(length(inds_cellctrl)) control_scale <- scale_shape_manual(values=c(16,9)) - - plot_pca <- plotPCA(sce, - colour_by = "log10_total_counts", - size_by = "total_features_by_counts", - shape_by=control_shape) + control_scale - - plot_tsne <- plotTSNE(sce, - colour_by = "pct_counts_feature_control", - size_by = "total_features_by_counts", - shape_by = control_shape) + control_scale - - # plot_tsne_type <- plotTSNE(sce, - # colour_by = "cell_type", - # size_by = "total_features_by_counts", - # shape_by = "cell_type") - - pdf(paste0("QC_dimReductions_",plate_id,".pdf"), pointsize=12) - plot(plot_pca) - plot(plot_tsne) - dev.off() - - - # outlier detection, as suggedted by (Theis, 2019) - - outlier_detect <- function(a_vector, low_q=0.1, high_q=0.9){ - thresholds <- quantile(a_vector, c(low_q, high_q)) - (a_vector < thresholds[1]) | (a_vector > thresholds[2]) - } - - sce$outlier_counts <- sce$total_counts %>% outlier_detect() - sce$outlier_features <- sce$total_features_by_counts %>% outlier_detect() - sce$outlier_fcontrol <- sce$pct_counts_feature_control %>% outlier_detect() - sce$outlier_mito <- sce$pct_counts_mitochondrial %>% outlier_detect() - sce$outlier_hits <- sce$outlier_counts + sce$outlier_features + - sce$outlier_fcontrol - - - #saving per cell stats in a table - per_cell_metric <- c("plate_position", "outlier_hits", - "outlier_counts" ,"outlier_features", "outlier_fcontrol", - "is_cell_control", "total_counts", "total_features_by_counts", - "pct_counts_mitochondrial", "pct_counts_ERCC", "pct_counts_in_top_100_features") - - per_cell_table <- as.data.frame(colData(sce)[, per_cell_metric]) - rownames(per_cell_table) <- rownames(per_cell_table) %>% - gsub("_[CATG]{8}-[CATG]{8}","",.) - sample_names <- per_cell_table %>% rownames - per_cell_table$sample_ID <- sample_names - per_cell_table <- per_cell_table %>% select(sample_ID, everything()) - write.table(per_cell_table, paste0("Per_sample_key_metrics_",plate_id,".tsv"), - sep='\t', row.names = F) - - triple_outliers <- which(per_cell_table$outlier_hits==3) %>% sample_names[.] - double_outliers <- which(per_cell_table$outlier_hits==2) %>% sample_names[.] - single_outliers <- which(per_cell_table$outlier_hits==1) %>% sample_names[.] - - save(plot_cumulative_dist, plot_ercc_scatter, plot_expr_vs_mean, plot_fctrl_scatter, - plot_featurenum_vs_counts, plot_highest_expression, plot_mito_scatter, - plot_plate_counts, plot_plate_mito, plot_plate_ercc, - plot_pca, plot_tsne, - per_cell_table, ercc_table, per_cell_metric, - triple_outliers, double_outliers, single_outliers, - plate_id, experiment_id, - sce, - file=paste0(plate_id,"qc_for_doc.Rdata")) - -} - -if(sys.nframe()==0){ - outloc <- "./" - plate_info <- 0 - sheetfile <- NULL - mtrds <- NULL - args=commandArgs(trailingOnly=T) - - if(!file.exists(args[1])) - stop(paste0("Matrix file ('",args[1],"') not found!")) - - if(length(args)>=2){ - outloc <- args[2] - if(!file.exists(outloc)){ - warning(paste0("Output directory ('",outloc,"') does not exist!"), - "\nCreating the directory...") - system(paste("mkdir -p",outloc)) - } - } - if(length(args)>=3) - plate_info <- args[3] - if(length(args)>=4) - sheetfile <- args[4] - if(length(args)>=5) - mtrds <- args[5] - - scqc_from_tsv(args[1], outloc, plate_info, sheetfile, mtrds) -} diff --git a/Scripts/scqc_from_matrix.meta.R b/Scripts/scqc_from_matrix.meta.R new file mode 100644 index 0000000..e8bd0c6 --- /dev/null +++ b/Scripts/scqc_from_matrix.meta.R @@ -0,0 +1,1142 @@ +# based on /ei/cb/development/lany/scqc_reqs-0.2.dev/scqc_reqs-0.2.2/scqc_from_matrix.meta1.R +# current location: /ei/cb/development/lany/scqc_reqs-0.2.dev/scqc_reqs-0.2.1/scqc_from_matrix.meta1.v2.R +# updated: +# 1. output QC_meanexp_vs_freq$plateID.pdf + +library(dplyr) +library(scater) + +#' Running single-cell QC on a tpm/estcount matrix +#' +#' @param tsv_location Expression matrix +#' @param output_location Where to store the QC files. +#' @param sheet_file Sample sheet with plate position, control status and sample ID information +#' If missing, plate position will try to be inferred from the .fastq file names +#' @param mt_file Mitochondrial genes .rds. If not provided, genes starting with "MT-" or +#' "mt-" will be considered mitochondrial (works only for human and mouse) +#' +#' @return None. Generates files (pdf plots, tsv tables). +#' @export +#' +#' @examples +# tsv_location="/ei/cb/analysis/CB-PPBFX-979_Iain_Macaulay_EI_CU_ENQ-5072_A_01/Analysis/run2.theleria_parva/scqc_reqs-0.1/quants_dir/est_countsCU5DAY0_matrix.tsv" + + +scqc_from_tsv <- function(tsv_location, pct_pseudo_txt, output_location="./", + sheet_file=NULL, mt_file=NULL) { + plot_pct_TParva=F + is_test=F + if (F) { + tsv_location="/Users/lany/mount_drives/HPC_Projects/6/69ea60ec-ae6f-4476-93d9-e6927e9d3c3a/data/results/Yuxuan_Lan/CB-GENANNO-590_Huihai_Wu_Smart-Seq2_smk_SCQC_pipeline_evaluation/Analysis/smartseq2QC-Jul2024/smartseq2QC/1plate.run5/qc_dir/HSCQ051PL1/est_countsHSCQ051PL1_matrix.tsv" + pct_pseudo_txt <- "/Users/lany/mount_drives/HPC_Projects/6/69ea60ec-ae6f-4476-93d9-e6927e9d3c3a/data/results/Yuxuan_Lan/CB-GENANNO-590_Huihai_Wu_Smart-Seq2_smk_SCQC_pipeline_evaluation/Analysis/smartseq2QC-Jul2024/smartseq2QC/1plate.run5/qc_dir/percent_pseudoaligned.txt" + output_location="/Users/lany/mount_drives/HPC_Projects/6/69ea60ec-ae6f-4476-93d9-e6927e9d3c3a/data/results/Yuxuan_Lan/CB-GENANNO-590_Huihai_Wu_Smart-Seq2_smk_SCQC_pipeline_evaluation/Analysis/smartseq2QC-Jul2024/smartseq2QC/1plate.run5/qc_dir/HSCQ051PL1" + sheet_file="/Users/lany/mount_drives/HPC_Projects/6/69ea60ec-ae6f-4476-93d9-e6927e9d3c3a/data/results/Yuxuan_Lan/CB-GENANNO-590_Huihai_Wu_Smart-Seq2_smk_SCQC_pipeline_evaluation/Analysis/smartseq2QC-Jul2024/smartseq2QC/1plate.run5/SampleSheet.PPBFX-1209.3_meta.v2.1plates.run1.unix.csv" + mt_file="/Users/lany/mount_drives/HPC_Projects/6/69ea60ec-ae6f-4476-93d9-e6927e9d3c3a/data/scqc_reqs-1.1_examples/CB-PPBFX-1209_Tiago_Luis_ICL_TL_ENQ-5739_A_01_SS2_QC/Reference/GRCm39/MT.Mus_musculus.GRCm39.rds" + } + + # ===== 1. read expression matrix ===== + #tsv will be est_counts or tpm matrix transcript X sample + #but counts still used as label in the SCE object + counts_df <- read.table(tsv_location, header = T, check.names = F) + fastqname <- colnames(counts_df) + # experiment_id <- gsub("/[A-z|_|\\.]+$","",tsv_location) %>% + # gsub("^.*/","",.) + plate_id <- "1" + + # 1.1: using the sheet_file if provided + if(!is.null(sheet_file)){ + samplesheet <- read.csv(sheet_file) + # ==== check what columns are missing from sample sheet ==== + column_to_check=c('Sample_Plate', 'Sample_Well', 'control', 'number_of_cells','meta_1','meta_2','ercc') + samplesheet.check <- data.frame(t(is.element(column_to_check,colnames(samplesheet)))) + colnames(samplesheet.check) <- column_to_check + # > samplesheet.check[1,] + # Sample_Plate Sample_Well control number_of_cells meta_1 meta_2 ercc + # 1 TRUE TRUE FALSE FALSE FALSE FALSE FALSE + + # check if above columns are fully entried (as T) + # colSums(is.na.data.frame(samplesheet))==0 + # > colSums(is.na.data.frame(samplesheet))==0 + # Lane Sample_ID Sample_Name Sample_Plate + # TRUE TRUE TRUE TRUE + # Sample_Well i7_index_ID Index i5_index_ID + # TRUE FALSE TRUE FALSE + # Index2 Sample_Project LibraryType TaxonID + # TRUE TRUE TRUE TRUE + # ScientificName DataQCPipeline UUID DataAccessGroup + # TRUE FALSE FALSE TRUE + # unique_sample_id_suffix + # TRUE + # + # make sure a column has all entries as na + + samplesheet.check[1,] <- samplesheet.check[1,]& + (colSums(is.na.data.frame(samplesheet)) samplesheet.check + # Sample_Plate Sample_Well control number_of_cells meta_1 meta_2 ercc + # 1 TRUE TRUE FALSE FALSE FALSE FALSE FALSE + if (!samplesheet.check$Sample_Well) stop('SampleSheet ERROR: "Sample_Well" column missing/incomplete!') + if (!samplesheet.check$Sample_Plate) stop('SampleSheet ERROR: "Sample_Plate" column missing/incomplete!') + + samplesheet$unique_sample_id_suffix <- paste0(samplesheet$Sample_Name,'_',samplesheet$Sample_ID) + # use this when colname of _matrix.tsv is fastqname + if (F) { + # internally derive unique_sample_id_suffix. use it to link fastqs + row_ids <- sapply(samplesheet$unique_sample_id_suffix, + function(id) grepl(paste0(id, "_"), colnames(counts_df))) %>% apply(1,which) + + # > samplesheet[row_ids[1:3],] + # Lane Sample_ID Sample_Name Sample_Plate Sample_Well i7_index_ID Index + # 281 1 A06956_1 R0121-S0097_2V2aA01s481 R0121-P0002 A1 NA TAAGGCGA + # 282 1 A06957_1 R0121-S0098_2V2aB01s482 R0121-P0002 B1 NA TAAGGCGA + # 283 1 A06958_1 R0121-S0099_2V2aC01s483 R0121-P0002 C1 NA TAAGGCGA + # i5_index_ID Index2 Sample_Project LibraryType TaxonID ScientificName + # 281 NA CTAGTCGA PIP-2406 Illuminapremadelibrary 9606 Homo sapiens + # 282 NA AGCTAGAA PIP-2406 Illuminapremadelibrary 9606 Homo sapiens + # 283 NA ACTCTAGG PIP-2406 Illuminapremadelibrary 9606 Homo sapiens + # DataQCPipeline UUID DataAccessGroup unique_sample_id_suffix + # 281 NA NA Internal R0121-S0097_2V2aA01s481_A06956_1 + # 282 NA NA Internal R0121-S0098_2V2aB01s482_A06957_1 + # 283 NA NA Internal R0121-S0099_2V2aC01s483_A06958_1 + + # experiment_id <- samplesheet[row_ids,]$experiment %>% unique + colnames(counts_df) <- samplesheet[row_ids,]$unique_sample_id_suffix + # > counts_df[1:2,1:4] + # R0121-S0097_2V2aA01s481_A06956_1 R0121-S0098_2V2aB01s482_A06957_1 + # transcript:ENST00000456328 0 0 + # transcript:ENST00000450305 0 0 + # R0121-S0099_2V2aC01s483_A06958_1 R0121-S0100_2V2aD01s484_A06959_1 + # transcript:ENST00000456328 0 0 + # transcript:ENST00000450305 + } + if (T){ + row_ids <- sapply(samplesheet$Sample_ID, + function(id) colnames(counts_df) %in% id) %>% apply(1,which) + colnames(counts_df) <- samplesheet[row_ids,]$unique_sample_id_suffix + + # check that colnames are in same order as the original df (ie.fastqnames are identical): Yes + # sapply(colnames(counts_df), function(id) strsplit(id,'_')%>%unlist%>%.[3]) %>% as.vector() == fastqname + + } + plate_id <- as.character(unique(samplesheet[row_ids,"Sample_Plate"])) + } + + if(length(plate_id)>1){ + plate_id <- "all" + } + + if (!samplesheet.check$control) { + inds_cellctrl <- numeric(0) + } else { + inds_cellctrl <- which(samplesheet[row_ids,]$control==T) + } + #feature and cell controls + inds_ercc <- counts_df %>% rownames() %>% grep("^ERCC",.) + inds_mito <- counts_df %>% rownames() %>% grep("\\|MT-",., ignore.case = T) #only for mouse? + + + long_names <- counts_df[-inds_ercc,] %>% rownames() + #takes a while, for transcripts with form "geneID|XXXX", this will remove any text after "|" + short_names <- sapply(long_names, function(s) strsplit(s,"\\|") %>% .[[1]] %>% .[1]) %>% as.vector + rownames(counts_df)[-inds_ercc] <- short_names + + mito_names <- long_names[inds_mito] %>% strsplit("\\|") %>% sapply(function(x) x[5]) %>% as.vector + rownames(counts_df)[inds_mito] <- mito_names + + if(!is.null(mt_file)){ + mito_names <- readRDS(mt_file) + inds_mito <- counts_df %>% rownames %>% + match(mito_names, .) %>% na.omit() + } + + if (is_test){ + save(counts_df, inds_ercc, inds_mito, inds_cellctrl, row_ids, cell_number, well_id,plate_id,plate_id.allcells, + experiment_id,samplesheet, file=file.path(output_location,sprintf('%s_countsdf.Rdata',plate_id))) + } + + # ==== single cell analysis starts here ===== + if (is_test){ + load(file.path(output_location,sprintf('%s_countsdf.Rdata','all')), verbose = T) + } + sce <- SingleCellExperiment(assays=list(counts=counts_df %>% as.matrix)) + sce$unique_sample_id_suffix <- colnames(counts_df) + sce$fastqname <- fastqname + # sce$Cell <- colnames(counts(sce)) # this is not used anywere + sce$control <- NULL + if (samplesheet.check$control) sce$control<-samplesheet[row_ids,]$control + sce$plate_position <- samplesheet[row_ids,]$Sample_Well + + sce$meta1 <- NULL + if (samplesheet.check$meta_1) sce$meta1<-as.factor(samplesheet[row_ids,]$meta_1) + sce$meta2 <- NULL + if (samplesheet.check$meta_2) sce$meta2<-as.factor(samplesheet[row_ids,]$meta_2) + # for case number_of_cells is 0,1 + # if (sum(unique(samplesheet[row_ids,]$number_of_cells)==c(0,1))==2){ + # sce$nb_cells<-factor(samplesheet[row_ids,]$number_of_cells, + # levels = c('1','0')) + # } else { + sce$nb_cells <- 1 + if (samplesheet.check$number_of_cells) sce$nb_cells<-as.factor(samplesheet[row_ids,]$number_of_cells) + # } + + sce$plate_id <- as.factor(samplesheet[row_ids,]$Sample_Plate) + # column meta1_numeric and meta2_numeric: currently not implemented + if (F){ + sce$meta1_numeric <- NULL + if (!is.null(samplesheet$meta1_numeric)) sce$meta1_numeric<-samplesheet[row_ids,]$meta_1_numeric + sce$meta2_numeric <- NULL + if (!is.null(samplesheet$meta2_numeric)) sce$meta2_numeric<-samplesheet[row_ids,]$meta_2_numeric + + } + + # sce <- calculateQCMetrics(sce, + # feature_controls = list(ERCC = inds_ercc, mitochondrial = inds_mito), + # cell_controls = list(Controls = inds_cellctrl) + # ) + sce <- addPerCellQC(sce, + subsets=list(ERCC = inds_ercc, mitochondrial = inds_mito)) + sce <- addPerFeatureQC(sce, subsets=list(cellctrl = inds_cellctrl)) + rowData(sce)$total_exp_cells <- scater::nexprs(sce, byrow=T, detection_limit=0) + rowData(sce)$pct_exp_cells <- rowData(sce)$total_exp_cells / ncol(sce) *100 + rowData(sce)$is_MT <- F + if (length(inds_mito)>0) { + rowData(sce)$is_MT[inds_mito] <- T + } + rowData(sce)$is_ERCC <- F + if (length(inds_ercc)>0) { + rowData(sce)$is_ERCC[inds_ercc] <- T + } + + # > head(colData(sce)) + # DataFrame with 6 rows and 18 columns + # unique_sample_id_suffix plate_position nb_cells plate_id sum detected ... + # R0121-S0097_2V2aA01s481_A06956_1 R0121-S0097_2V2aA01s481_A06956_1 A1 1 R0121-P0002 256.999995494704 247 + # R0121-S0098_2V2aB01s482_A06957_1 R0121-S0098_2V2aB01s482_A06957_1 B1 1 R0121-P0002 17891.9997868149 7229 + # R0121-S0099_2V2aC01s483_A06958_1 R0121-S0099_2V2aC01s483_A06958_1 C1 1 R0121-P0002 14966.9988926191 6755 + # R0121-S0100_2V2aD01s484_A06959_1 R0121-S0100_2V2aD01s484_A06959_1 D1 1 R0121-P0002 22724.9999667178 8832 + # R0121-S0101_2V2aE01s485_A06960_1 R0121-S0101_2V2aE01s485_A06960_1 E1 1 R0121-P0002 22625.0000854361 8159 + # R0121-S0102_2V2aF01s486_A06961_1 R0121-S0102_2V2aF01s486_A06961_1 F1 1 R0121-P0002 30711.0014675777 10666 + + # specific to B.Taurus with T.Parva + if (plot_pct_TParva){ + # specific to B.Taurus with T.Parva + rowData(sce)$species <- rep(NA,nrow(rowData(sce))) + rowData(sce)$species[grep('TpMuguga',rownames(rowData(sce)))] <- 'T_Parva' + rowData(sce)$species[grep('transcript:ENSBTAT',rownames(rowData(sce)))] <- 'B_Taurus' + # calculate per cell %count from each of TParva and BTaurus + colData(sce)$pct_counts_in_TParva <- rep(0.0000, nrow(colData(sce))) + colData(sce)$total_counts_in_TParva <- rep(0, nrow(colData(sce))) + + species_row <- rowData(sce)$species=='T_Parva' + pct_count_in_species <- function(one_column, species_row){ + return(sum(one_column[species_row])/sum(one_column)) + } + colData(sce)$pct_counts_in_TParva <- apply(X=counts(sce), MARGIN = 2, + FUN = pct_count_in_species, species_row=species_row) + total_count_in_species <- function(one_column, species_row){ + return(sum(one_column[species_row])) + } + colData(sce)$total_counts_in_TParva <- apply(X=counts(sce), MARGIN = 2, + FUN = total_count_in_species, species_row=species_row) + } + # rm(counts_df) + setwd(output_location) + + # ===== 1. QC_scatterplots_X.pdf ==== + cellctrl_flag <- NULL + if(length(inds_cellctrl)>0){ + cellctrl_flag <- "control" + } + nbcell_flag <- NULL + if(length(unique(sce$nb_cells))>1){ + nbcell_flag <- "nb_cells" + } + # for case: nbcells=(0,1) with 0 as cell control, we want 1 to have small marker size. + cellsize_flip_flag=F + nbcell_markersize=NULL + if (F){ + # the case when number_of_cells=(0,1) + if (length(unique(samplesheet[row_ids,]$number_of_cells))==2){ + if (sum(sort(unique(samplesheet[row_ids,]$number_of_cells))==c(0,1))==2) cellsize_flip_flag=T + } + } + if (F){ + if (length(unique(samplesheet[row_ids,]$number_of_cells))>1){ + # a case: assign the most frequent number to smallest size + t <- samplesheet[row_ids,'number_of_cells'] %>% table %>% sort(.,decreasing = T) %>% as.data.frame + colnames(t) <- c('number_of_cells','freq') + t$number_of_cells <- as.numeric(as.character(t$number_of_cells)) + # > t + # number_of_cells freq + # 1 1 82 + # 2 0 6 + # 3 2 6 + # 4 20 1 + # 5 50 1 + cellsize_flip_flag=T + t$markersize <- seq(2,2*nrow(t),by=2) + t <- t[order(t$number_of_cells),] + nbcell_markersize <- t$markersize + } + } + + if (length(unique(samplesheet[row_ids,]$number_of_cells))>2){ + if (is.element(1, unique(samplesheet[row_ids,]$number_of_cells))){ + cellsize_flip_flag=T + t <- data.frame(number_of_cells=sort(unique(samplesheet[row_ids,]$number_of_cells)), + markersize=0) + markersize <- seq(2,2*nrow(t),by=2) + t$markersize[t$number_of_cells==1]=2 + t$markersize[t$number_of_cells!=1]=markersize[markersize!=2] + nbcell_markersize <- t$markersize + } + } + + meta1_flag <- NULL + if (length(unique(sce$meta1))>1) meta1_flag <- 'meta1' + meta2_flag <- NULL + if (length(unique(sce$meta2))>1) meta2_flag <- 'meta2' + + MT_flag <- NULL + if(length(inds_mito)>0) MT_flag <- "is_MT" + + ERCC_flag <- NULL + if(length(inds_ercc)>0) ERCC_flag <- "is_ERCC" + + pdf(paste0("QC_scatterplots_",plate_id,".pdf"), pointsize = 12) + + # plot1: log_count vs total feature + # optimal display: + call_plotColData <- function(sce=NULL, x = "sum",y = "detected", + colour_by = NULL, size_by= NULL, shape_by=NULL, cellsize_flip_flag=F, + nbcell_markersize=NULL + ) { + + p <- plotColData(sce, x = x,y = y, colour_by = colour_by, size_by= size_by, shape_by=shape_by) + p <- p+scale_x_log10() + if (cellsize_flip_flag) p <- p + scale_size_manual(values=nbcell_markersize) + p <- p+theme(legend.position = "right") + xlab("log_total_counts") + ylab("total_features") + + labs(title="Total features ~ total counts (log scale)") + return(p) + } + plot_featurenum_vs_counts <- list() + pidx <- 1 + size_by= nbcell_flag + if (!is.null(cellctrl_flag)){ + colour_by = cellctrl_flag + shape_by=NULL + if (!is.null(meta1_flag)){ + shape_by=meta1_flag + plot_featurenum_vs_counts[[pidx]] <- + call_plotColData(sce, colour_by = colour_by, size_by= size_by,cellsize_flip_flag=cellsize_flip_flag, + nbcell_markersize = nbcell_markersize,shape_by=meta1_flag) + + if (F){# this is to test the plot, make sure all text fit inside figure + p <- plotColData(sce, x = "sum",y = "detected", + colour_by = colour_by, size_by= size_by, shape_by=shape_by) + p <- p+scale_x_log10() + if (cellsize_flip_flag) p <- p + scale_size_manual(values=c(4,2,6,8,10)) + p <- p+theme(legend.position = "right") + xlab("log_total_counts") + ylab("total_features") + + labs(title="Total features ~ total counts (log scale)") + } + plot(plot_featurenum_vs_counts[[pidx]]) + pidx <- pidx+1 + } + if (!is.null(meta2_flag)){ + shape_by=meta2_flag + plot_featurenum_vs_counts[[pidx]] <-call_plotColData(sce, colour_by = colour_by, size_by= size_by, + cellsize_flip_flag=cellsize_flip_flag, nbcell_markersize = nbcell_markersize,shape_by=meta2_flag) + plot(plot_featurenum_vs_counts[[pidx]]) + pidx <- pidx+1 + } + if(is.null(meta1_flag) & is.null(meta2_flag)){ + plot_featurenum_vs_counts[[pidx]] <-call_plotColData(sce, colour_by = colour_by, size_by= size_by, + cellsize_flip_flag=cellsize_flip_flag, nbcell_markersize = nbcell_markersize,shape_by=NULL) + plot(plot_featurenum_vs_counts[[pidx]]) + pidx <- pidx+1 + } + } else { + shape_by=NULL + colour_by=NULL + if (!is.null(meta1_flag)){ + plot_featurenum_vs_counts[[pidx]] <-call_plotColData(sce, colour_by=meta1_flag, size_by=size_by, shape_by=shape_by) + plot(plot_featurenum_vs_counts[[pidx]]) + pidx <- pidx+1} + if (!is.null(meta2_flag)){ + plot_featurenum_vs_counts[[pidx]] <-call_plotColData(sce, colour_by=meta2_flag, size_by=size_by, shape_by=shape_by) + plot(plot_featurenum_vs_counts[[pidx]]) + pidx <- pidx+1} + if(is.null(meta1_flag) & is.null(meta2_flag)){ + plot_featurenum_vs_counts[[pidx]] <-call_plotColData(sce, colour_by=NULL, size_by=size_by, shape_by=shape_by) + plot(plot_featurenum_vs_counts[[pidx]]) + pidx <- pidx+1} + } + + if(plot_pct_TParva & !is.null(meta1_flag)){ + plot_featurenum_vs_counts[[pidx]] <- call_plotColData(sce, x='pct_counts_in_TParva', y='detected', + colour_by=meta1_flag, size_by= nbcell_flag,cellsize_flip_flag=cellsize_flip_flag, shape_by=meta1_flag)+ + theme(legend.position = "top") + xlab("pct_counts_in_TParva (0,1)") + ylab("total_features") + + labs(title="Total features ~ pct counts (log scale)") + plot(plot_featurenum_vs_counts[[pidx]]) + pidx <- pidx+1 + + plot_featurenum_vs_counts[[pidx]]<- call_plotColData(sce, x='total_counts_in_TParva', y='detected', + colour_by=meta1_flag, size_by= nbcell_flag,cellsize_flip_flag=cellsize_flip_flag, shape_by=meta1_flag) + + theme(legend.position = "top") + xlab("total_counts_in_TParva (0,1)") + ylab("total_features") + + labs(title="Total features ~ total counts TParva (log scale)") + plot(plot_featurenum_vs_counts[[pidx]]) + pidx <- pidx+1 + } + + # plot2. + plot_cumulative_dist <- plotScater(sce, nfeatures = 300, exprs_values = "counts", + colour_by = cellctrl_flag) + plot(plot_cumulative_dist) + + if (F){ + idx_row=288 # + # sce$de + + } + # plot3: mean expression vs frequency expressed, as part of the scatter pdf file + if (F){ + plot_expr_vs_mean <- plotRowData(sce, x='mean', y='pct_exp_cells', by_exprs_values='counts', colour_by=ERCC_flag)+scale_x_log10()+ + ylab('percentage of expressing cells')+xlab('mean expression')+ + geom_hline(yintercept = 50, linetype='dashed')+geom_vline(xintercept = mean(assay(sce,'counts')),linetype='dashed')+ + geom_text(label=sprintf('%d genes are expressed in at least 50%% of cells', sum(rowData(sce)$pct_exp_cells>=50)), + y=40, x=10^(-05), size=4)+ + geom_text(label=sprintf('%d genes are expressed in at least 25%% of cells', sum(rowData(sce)$pct_exp_cells>=25)), + y=20, x=10^(-05), size=4)+ + geom_text(label=sprintf('%d genes are expressed in at least 1 cell', sum(rowData(sce)$detected>0)), + y=60, x=10^(-05), size=4) + plot(plot_expr_vs_mean) + } + # plot4: total count across genes + plot_highest_expression <- plotHighestExprs(sce, exprs_values = "counts", colour_cells_by=cellctrl_flag, + as_percentage=T)+xlab('% of counts') + plot(plot_highest_expression) + + #% plot 5 and the rest: any feature control + if (!is.null(cellctrl_flag)){ + # MT + plot_mito_scatter <- plotColData(sce, x = "detected", y = "subsets_mitochondrial_percent", + colour_by = cellctrl_flag, size_by=nbcell_flag) + theme(legend.position = "right") + xlab("total_features") + + labs(title=sprintf("Out of %d transcripts, Mitochondrial expression percentage ~ total features", nrow(counts(sce)))) + if (cellsize_flip_flag) plot_mito_scatter <- plot_mito_scatter + scale_size_manual(values=nbcell_markersize) + + plot(plot_mito_scatter) + # ERCC + plot_ercc_scatter <- plotColData(sce, x = "detected", y = "subsets_ERCC_percent", + colour_by = cellctrl_flag, size_by=nbcell_flag) + theme(legend.position = "right") + xlab("total_features") + + labs(title="Spike-in expression percentage ~ total features") + if (cellsize_flip_flag) plot_ercc_scatter <- plot_ercc_scatter + scale_size_manual(values=nbcell_markersize) + plot(plot_ercc_scatter) + } else { + # MT + plot_mito_scatter <- plotColData(sce, x = "detected", y = "subsets_mitochondrial_percent", + colour_by = nbcell_flag, size_by=nbcell_flag) + theme(legend.position = "right") + xlab("total_features") + + labs(title=sprintf("Out of %d transcripts, Mitochondrial expression percentage ~ total features", nrow(counts(sce)))) + if (cellsize_flip_flag) plot_mito_scatter <- plot_mito_scatter + scale_size_manual(values=nbcell_markersize) + plot(plot_mito_scatter) + # ERCC + plot_ercc_scatter <- plotColData(sce, x = "detected", y = "subsets_ERCC_percent", + colour_by = nbcell_flag, size_by=nbcell_flag) + theme(legend.position = "right") + xlab("total_features") + + labs(title="Spike-in expression percentage ~ total features") + if (cellsize_flip_flag) plot_ercc_scatter <- plot_ercc_scatter + scale_size_manual(values=nbcell_markersize) + plot(plot_ercc_scatter) + } + dev.off() + + # plot3: mean expression vs frequency expressed. save as pdf - will be converted to png using ghostscript. + if (F){ + pdf(paste0("/ei/cb/analysis/CB-GENANNO-543_Stuart_Rushworth_UOE_SR_ENQ-5327_A_01/Analysis/scqc_reqs-0.2.2/run1/qc_dir.test/", + "QC_meanexp_vs_freq",plate_id,".pdf"), pointsize = 8) + plot_expr_vs_mean <- plotRowData(sce, x='mean', y='pct_exp_cells', by_exprs_values='counts', colour_by=ERCC_flag)+scale_x_log10()+ + ylab('percentage of expressing cells')+xlab('mean expression')+ + geom_hline(yintercept = 50, linetype='dashed')+geom_vline(xintercept = mean(assay(sce,'counts')),linetype='dashed')+ + geom_text(label=sprintf('%d genes are expressed in at least 50%% of cells', sum(rowData(sce)$pct_exp_cells>=50)), + y=40, x=10^(-05), size=4)+ + geom_text(label=sprintf('%d genes are expressed in at least 25%% of cells', sum(rowData(sce)$pct_exp_cells>=25)), + y=20, x=10^(-05), size=4)+ + geom_text(label=sprintf('%d genes are expressed in at least 1 cell', sum(rowData(sce)$detected>0)), + y=60, x=10^(-05), size=4) + plot(plot_expr_vs_mean) + dev.off() + + } + # plot 3: as above, now output single pdf file - this will be converted to png via ghostscript + if (T){ + pdf(paste0("QC_meanexp_vs_freq",plate_id,".pdf"), pointsize = 8) + + plot_expr_vs_mean <- plotRowData(sce, x='mean', y='pct_exp_cells', by_exprs_values='counts', colour_by=ERCC_flag)+scale_x_log10()+ + ylab('percentage of expressing cells')+xlab('mean expression')+ + geom_hline(yintercept = 50, linetype='dashed')+geom_vline(xintercept = mean(assay(sce,'counts')),linetype='dashed')+ + geom_text(label=sprintf('%d genes are expressed in at least 50%% of cells', sum(rowData(sce)$pct_exp_cells>=50)), + y=40, x=10^(-05), size=4)+ + geom_text(label=sprintf('%d genes are expressed in at least 25%% of cells', sum(rowData(sce)$pct_exp_cells>=25)), + y=20, x=10^(-05), size=4)+ + geom_text(label=sprintf('%d genes are expressed in at least 1 cell', sum(rowData(sce)$detected>0)), + y=60, x=10^(-05), size=4) + plot(plot_expr_vs_mean) + dev.off() + + } + + # plot3: mean expression vs frequency expressed. save using png function: THIS ONLY WORK ON RSTUDIO WITH GRAPHIC SUPPORT. + if (F){ + #options(bitmapType='Xlib') doesn't work + #options(bitmapType='cairo')doesn't work + #options(bitmapType = 'cairo', device = 'png')doesn't work + if (F){ + # test png output function. save to qc_dir.test + png(paste0('/ei/cb/analysis/CB-GENANNO-543_Stuart_Rushworth_UOE_SR_ENQ-5327_A_01/Analysis/scqc_reqs-0.2.2/run1/qc_dir.test/', + "QC_meanexp_vs_freq",plate_id,".png"), pointsize = 12, width = 720, height = 720) + + } + png(paste0("QC_meanexp_vs_freq",plate_id,".png"), pointsize = 12, width = 720, height = 720) + # plot_expr_vs_mean <- plotExprsFreqVsMean(sce, exprs_values = "counts", show_smooth = F) + # function plotExprsFreqVsMean is discontinuous, so make our own + plot_expr_vs_mean <- plotRowData(sce, x='mean', y='pct_exp_cells', by_exprs_values='counts', colour_by=ERCC_flag)+scale_x_log10()+ + ylab('percentage of expressing cells')+xlab('mean expression')+ + geom_hline(yintercept = 50, linetype='dashed')+geom_vline(xintercept = mean(assay(sce,'counts')),linetype='dashed')+ + geom_text(label=sprintf('%d genes are expressed in at least 50%% of cells', sum(rowData(sce)$pct_exp_cells>=50)), + y=40, x=10^(-05), size=6)+ + geom_text(label=sprintf('%d genes are expressed in at least 25%% of cells', sum(rowData(sce)$pct_exp_cells>=25)), + y=20, x=10^(-05), size=6)+ + geom_text(label=sprintf('%d genes are expressed in at least 1 cell', sum(rowData(sce)$detected>0)), + y=60, x=10^(-05), size=6) + plot(plot_expr_vs_mean) + dev.off() + } + # plot3: ggsave. mean expression vs frequency expressed: DOESN'T WORK + if (F){ + pngfile=paste0("QC_meanexp_vs_freq",plate_id,".png") + ggsave(pngfile, device='png') + unlink(pngfile) + # plot_expr_vs_mean <- plotExprsFreqVsMean(sce, exprs_values = "counts", show_smooth = F) + # function plotExprsFreqVsMean is discontinuous, so make our own + plot_expr_vs_mean <- plotRowData(sce, x='mean', y='pct_exp_cells', by_exprs_values='counts', colour_by=ERCC_flag)+scale_x_log10()+ + ylab('percentage of expressing cells')+xlab('mean expression')+ + geom_hline(yintercept = 50, linetype='dashed')+ + geom_text(label=sprintf('%d genes are expressed in at least 50%% of cells', sum(rowData(sce)$pct_exp_cells>=50)), + y=40, x=10^(-05), size=6)+ + geom_text(label=sprintf('%d genes are expressed in at least 25%% of cells', sum(rowData(sce)$pct_exp_cells>=25)), + y=20, x=10^(-05), size=6)+ + geom_text(label=sprintf('%d genes are expressed in at least 1 cell', sum(rowData(sce)$detected>0)), + y=60, x=10^(-05), size=6) + plot(plot_expr_vs_mean) + png(pngfile, pointsize = 12, width = 720, height = 720) + dev.off() + } + # ===== 1.2 QC_violinplots_X.pdf ==== + pdf(paste0("QC_violinplots_",plate_id,".pdf"), pointsize = 12) + pviolin_idx <- 1 + plot_violin_scatter <- list() + + # plot for plates + # a) sum + plot_violin_scatter[[pviolin_idx]] <- plotColData(sce, x = "plate_id", y = "sum", + colour_by = cellctrl_flag, size_by=nbcell_flag) + + xlab("plate_id") + + #stat_smooth(method = "lm", se = FALSE, size = 1.5, fullrange = TRUE) + + ggtitle("total counts") + if (cellsize_flip_flag) plot_violin_scatter[[pviolin_idx]] <- plot_violin_scatter[[pviolin_idx]] + scale_size_manual(values=nbcell_markersize) + + plot(plot_violin_scatter[[pviolin_idx]]) + pviolin_idx <- pviolin_idx+1 + + # b) detected + plot_violin_scatter[[pviolin_idx]] <- plotColData(sce, x = "plate_id", y = "detected", + colour_by = cellctrl_flag, size_by=nbcell_flag) + + xlab("plate_id") + + #stat_smooth(method = "lm", se = FALSE, size = 1.5, fullrange = TRUE) + + ggtitle("detected transcripts") + if (cellsize_flip_flag) plot_violin_scatter[[pviolin_idx]] <- plot_violin_scatter[[pviolin_idx]] + scale_size_manual(values=nbcell_markersize) + plot(plot_violin_scatter[[pviolin_idx]]) + pviolin_idx <- pviolin_idx+1 + + # c) pc_MT + plot_violin_scatter[[pviolin_idx]] <- plotColData(sce, x = "plate_id", y = "subsets_mitochondrial_percent", + colour_by = cellctrl_flag, size_by=nbcell_flag) + + xlab("plate_id") + + #stat_smooth(method = "lm", se = FALSE, size = 1.5, fullrange = TRUE) + + ggtitle("mitochondrial expression percentage ~ total feature") + if (cellsize_flip_flag) plot_violin_scatter[[pviolin_idx]] <- plot_violin_scatter[[pviolin_idx]] + scale_size_manual(values=nbcell_markersize) + plot(plot_violin_scatter[[pviolin_idx]]) + pviolin_idx <- pviolin_idx+1 + + # c) pc_ERCC + if (!is.null(ERCC_flag)){ + plot_violin_scatter[[pviolin_idx]] <- plotColData(sce, x = "plate_id", y = "subsets_ERCC_percent", + colour_by = cellctrl_flag, size_by=nbcell_flag) + + xlab("plate_id") + + #stat_smooth(method = "lm", se = FALSE, size = 1.5, fullrange = TRUE) + + ggtitle("ERCC expression percentage ~ total feature") + if (cellsize_flip_flag) plot_violin_scatter[[pviolin_idx]] <- plot_violin_scatter[[pviolin_idx]] + scale_size_manual(values=nbcell_markersize) + plot(plot_violin_scatter[[pviolin_idx]]) + pviolin_idx <- pviolin_idx+1 + } + + + # plot on meta1 / meta2 as category type + for (meta_col in c('meta1','meta2')){ + if (meta_col=='meta1'){meta_flag=meta1_flag; xlab_txt='meta1'} + if (meta_col=='meta2'){meta_flag=meta2_flag; xlab_txt='meta2'} + if (!is.null(meta_flag)) { + # a) sum + plot_violin_scatter[[pviolin_idx]] <- plotColData(sce, x = xlab_txt, y = "sum", + colour_by = cellctrl_flag, size_by=nbcell_flag) + + xlab(xlab_txt) + + #stat_smooth(method = "lm", se = FALSE, size = 1.5, fullrange = TRUE) + + ggtitle("total counts") + if (cellsize_flip_flag) plot_violin_scatter[[pviolin_idx]] <- plot_violin_scatter[[pviolin_idx]] + scale_size_manual(values=nbcell_markersize) + plot(plot_violin_scatter[[pviolin_idx]]) + pviolin_idx <- pviolin_idx+1 + + # b) detected + plot_violin_scatter[[pviolin_idx]] <- plotColData(sce, x = xlab_txt, y = "detected", + colour_by = cellctrl_flag, size_by=nbcell_flag) + + xlab(xlab_txt) + + #stat_smooth(method = "lm", se = FALSE, size = 1.5, fullrange = TRUE) + + ggtitle("detected transcripts") + if (cellsize_flip_flag) plot_violin_scatter[[pviolin_idx]] <- plot_violin_scatter[[pviolin_idx]] + scale_size_manual(values=nbcell_markersize) + + plot(plot_violin_scatter[[pviolin_idx]]) + pviolin_idx <- pviolin_idx+1 + + # c) pc_MT + plot_violin_scatter[[pviolin_idx]] <- plotColData(sce, x = xlab_txt, y = "subsets_mitochondrial_percent", + colour_by = cellctrl_flag, size_by=nbcell_flag) + + xlab(xlab_txt) + + #stat_smooth(method = "lm", se = FALSE, size = 1.5, fullrange = TRUE) + + ggtitle("mitochondrial expression percentage ~ total feature") + if (cellsize_flip_flag) plot_violin_scatter[[pviolin_idx]] <- plot_violin_scatter[[pviolin_idx]] + scale_size_manual(values=nbcell_markersize) + + plot(plot_violin_scatter[[pviolin_idx]]) + pviolin_idx <- pviolin_idx+1 + + # c) pc_ERCC + if (!is.null(ERCC_flag)){ + plot_violin_scatter[[pviolin_idx]] <- plotColData(sce, x = xlab_txt, y = "subsets_ERCC_percent", + colour_by = cellctrl_flag, size_by=nbcell_flag) + + xlab(xlab_txt) + + #stat_smooth(method = "lm", se = FALSE, size = 1.5, fullrange = TRUE) + + ggtitle("ERCC expression percentage ~ total feature") + if (cellsize_flip_flag) plot_violin_scatter[[pviolin_idx]] <- plot_violin_scatter[[pviolin_idx]] + scale_size_manual(values=nbcell_markersize) + + plot(plot_violin_scatter[[pviolin_idx]]) + pviolin_idx <- pviolin_idx+1 + } + } + } + dev.off() + # ===== 2. QC_dimReductions_X.pdf ===== + plot_pca <- list() + pcaidx <- 1 + + control_shape <- NULL + if(length(inds_cellctrl)) control_shape <- "control" + control_scale <- NULL + if(length(inds_cellctrl)) control_scale <- scale_shape_manual(values=c(16,9)) + + sce <- logNormCounts(sce) + # pca on lognorm exp by default anyway + sce <- BiocSingular::runPCA(sce, ncomponents=20, exprs_values = "logcounts") + # UMAP + sce <- runUMAP(sce, dimred = "PCA", ncomponents = 2, exprs_values = "logcounts", + name = "UMAP_on_PCA") + # old version using t-SNE + if (F){ + set.seed(1000) + sce <- scater::runTSNE(sce, perplexity=10) + if (is_test) str(reducedDim(sce,'PCA')) + + pdf(paste0("QC_dimReductions_",plate_id,".pdf"), pointsize=12) + + plot_pca[[pcaidx]] <- plotPCA(sce,colour_by = "sum",size_by = "detected", + shape_by=control_shape) +control_scale+ + ggtitle('PCA on expression matrix') + # plot_pca <- plot_pca + scale_fill_continuous(name='total counts')+ + # scale_size_continuous(name = "total features") + plot(plot_pca[[pcaidx]]) + pcaidx <- pcaidx+1 + # TSNE: can run multiple times with different seed and perplexity. + + plot_tsne <- plotTSNE(sce, + colour_by = "sum",size_by = "detected",shape_by = control_shape) + + control_scale+ggtitle('TSNE on expression matrix') + plot(plot_tsne) + + # plot MT%, control%, ERCC% by TSNE if any + plot_pca_ctr <- list() + pidx <- 1 + plot_pca_ctr[[pidx]] <- plotPCA(sce, + colour_by = "subsets_mitochondrial_percent",size_by = "detected",shape_by = control_shape) + + control_scale+ggtitle('PCA on expression matrix, %MT per cell') + plot(plot_pca_ctr[[pidx]]) + pidx <- pidx+1 + + plot_pca_ctr[[pidx]] <- plotPCA(sce, + colour_by = "subsets_ERCC_percent",size_by = "detected",shape_by = control_shape) + + control_scale+ggtitle('PCA on expression matrix, %ERCC per cell') + plot(plot_pca_ctr[[pidx]]) + pidx <- pidx+1 + dev.off() + } + + pdf(paste0("QC_dimReductions_",plate_id,".pdf"), pointsize=12) + # PCA + plot_pca[[pcaidx]] <- plotPCA(sce,colour_by = "sum",size_by = "detected", + shape_by=control_shape) +control_scale+ + ggtitle('PCA on expression matrix') + # plot_pca <- plot_pca + scale_fill_continuous(name='total counts')+ + # scale_size_continuous(name = "total features") + plot(plot_pca[[pcaidx]]) + pcaidx <- pcaidx+1 + + # UMAP + plot_pca[[pcaidx]] <- plotReducedDim(sce,'UMAP_on_PCA', colour_by = "sum",size_by = "detected", + shape_by=control_shape, ncomponents = 2) +control_scale+ + ggtitle('UMAP on expression matrix') + plot(plot_pca[[pcaidx]]) + pcaidx <- pcaidx+1 + + # plot MT%, control%, ERCC% by UMAP if any + plot_pca_ctr <- list() + pidx <- 1 + + # if number of wells > 500, it becomes difficult to visualise with different marker size + tmp.size_by <- NULL + if (length(sce$unique_sample_id_suffix)<500) tmp.size_by <- 'detected' + + plot_pca_ctr[[pidx]] <- plotReducedDim(sce,'UMAP_on_PCA',colour_by = "subsets_mitochondrial_percent", + size_by = tmp.size_by,shape_by = control_shape) + + control_scale+ggtitle('UMAP on expression matrix, %MT per cell') + plot(plot_pca_ctr[[pidx]]) + pidx <- pidx+1 + + plot_pca_ctr[[pidx]] <- plotReducedDim(sce,'UMAP_on_PCA',colour_by = "subsets_ERCC_percent", + size_by = tmp.size_by,shape_by = control_shape) + + control_scale+ggtitle('UMAP on expression matrix, %ERCC per cell') + plot(plot_pca_ctr[[pidx]]) + pidx <- pidx+1 + + dev.off() + + # ===== 3. QC_dimReductions_X.meta.pdf ===== + # old version with PCA + if (F){ + if (samplesheet.check$meta_1 | samplesheet.check$meta_2){ + pdf(paste0("QC_dimReductions_",plate_id,".meta.pdf"), pointsize=12) + colour_by=NULL + if(samplesheet.check$meta_1 & !samplesheet.check$meta_2) { + plot_pca[[pcaidx]] <- plotPCA(sce, colour_by = "sum", size_by = "detected", shape_by='meta1') + + ggtitle('PCA on expression matrix using meta group for shape') + plot(plot_pca[[pcaidx]]) + pcaidx <- pcaidx+1 + } else if (!samplesheet.check$meta_1 & samplesheet.check$meta_2) { + plot_pca[[pcaidx]] <- plotPCA(sce, colour_by = "sum", size_by = "detected", shape_by='meta2') + + ggtitle('PCA on expression matrix using meta group for shape') + plot(plot_pca[[pcaidx]]) + pcaidx <- pcaidx+1 + } else if (samplesheet.check$meta_1 & samplesheet.check$meta_2) { + plot_pca[[pcaidx]] <- plotPCA(sce, colour_by = "meta1", size_by = "detected", shape_by='meta2') + + ggtitle('PCA on expression matrix using meta groups for colour and shape') + plot(plot_pca[[pcaidx]]) + pcaidx <- pcaidx+1 + } + dev.off() + } + } + if (samplesheet.check$meta_1 | samplesheet.check$meta_2){ + tmp.size_by <- NULL + if (length(sce$unique_sample_id_suffix)<500) tmp.size_by <- 'detected' + + pdf(paste0("QC_dimReductions_",plate_id,".meta.pdf"), pointsize=12) + colour_by=NULL + if(samplesheet.check$meta_1 & !samplesheet.check$meta_2) { + plot_pca[[pcaidx]] <- plotReducedDim(sce,'UMAP_on_PCA', colour_by = "sum", size_by = tmp.size_by, shape_by='meta1') + + ggtitle('UMAP on expression matrix using meta group for shape') + plot(plot_pca[[pcaidx]]) + pcaidx <- pcaidx+1 + } else if (!samplesheet.check$meta_1 & samplesheet.check$meta_2) { + plot_pca[[pcaidx]] <- plotReducedDim(sce,'UMAP_on_PCA', colour_by = "sum", size_by = tmp.size_by, shape_by='meta2') + + ggtitle('UMAP on expression matrix using meta group for shape') + plot(plot_pca[[pcaidx]]) + pcaidx <- pcaidx+1 + } else if (samplesheet.check$meta_1 & samplesheet.check$meta_2) { + plot_pca[[pcaidx]] <- plotReducedDim(sce,'UMAP_on_PCA', colour_by = "meta1", size_by = tmp.size_by, shape_by='meta2') + + ggtitle('UMAP on expression matrix using meta groups for colour and shape') + plot(plot_pca[[pcaidx]]) + pcaidx <- pcaidx+1 + } + dev.off() + + } + + # ===== 4. QC_dimReductions_X.plate_id.pdf ===== + if(length(unique(sce$plate_id))>1) { + pdf(paste0("QC_dimReductions_",plate_id,"plate_id.pdf"), pointsize=12) + # control_scale <- scale_shape_manual(values=c(16,9)) + if (length(unique(sce$plate_id))<10){ + plot_pca[[pcaidx]] <- plotReducedDim(sce,'UMAP_on_PCA', + colour_by = "sum", + size_by = "detected", + shape_by='plate_id') #+ control_scale + + } else{ + plot_pca[[pcaidx]] <- plotReducedDim(sce,'UMAP_on_PCA', + colour_by = "plate_id") #+ control_scale + } + plot_pca[[pcaidx]] <- plot_pca[[pcaidx]]+ggtitle('UMAP on expression matrix using plate id as shape') + plot(plot_pca[[pcaidx]]) + pcaidx <- pcaidx+1 + dev.off() + } + + # ===== 5. Plate_position_plots_X.pdf ==== + pdf(paste0("Plate_position_plots_",plate_id,".pdf"), pointsize = 12) + plot_plate_counts <- plotPlatePosition(sce, colour_by = "sum", by_exprs_values = "counts", point_size = 9) + + guides(fill="colorbar") + theme(legend.position = "top")#+ggtitle('total counts on each well') + plot(plot_plate_counts) + plot_plate_mito <- plotPlatePosition(sce, colour_by = "subsets_mitochondrial_percent", by_exprs_values = "counts", point_size = 9) + + guides(fill="colorbar") + theme(legend.position = "top")#+ggtitle('%MT count on each well') + plot(plot_plate_mito) + plot_plate_ercc <- plotPlatePosition(sce, colour_by = "subsets_ERCC_percent", by_exprs_values = "counts", point_size = 9) + + guides(fill="colorbar")+ theme(legend.position = "top")#+ggtitle('%ERCC count on each well') + plot(plot_plate_ercc) + dev.off() + # ===== 6. Sample_counts_across_ERCCs_X.tsv ===== + # ERCC mol + # >add %ERCC + ercc_counts <- counts(sce)[inds_ercc,] %>% as.data.frame(stringsAsFactors=F) + + # colnames(ercc_counts) <- ercc_counts %>% colnames() %>% gsub("_.*$","",.) + ercc_counts$All_samples <- rowSums(ercc_counts) + ercc_counts$ERCC <- rownames(ercc_counts) + df_col <- ncol(ercc_counts) + + ercc_table <- ercc_counts[,c(df_col, df_col-1, 1:(df_col-2))] + colnames(ercc_table) <- c('ERCC', 'All_samples',sce$fastqname) + + write.table(ercc_table, paste0("Sample_counts_across_ERCCs_",plate_id,".tsv"), + sep='\t', row.names = F) + + # ==== 7. outlier detection ==== + + # outlier cell condition 1: MT >10% + MT_thresh <- 10 + sce$outlier_pct_MT <- sce$subsets_mitochondrial_percent>MT_thresh + + # condition 2: read mapping rate < 50% + # read alignment rate file + maprate_df <- read.table(pct_pseudo_txt, header = F, check.names = F) + # maprate_df <- read.table(basename(pct_pseudo_txt), header = F, check.names = F) #wu + colnames(maprate_df) <- c('readname','map_rate') + maprate_df <- maprate_df[-(maprate_df$readname=='mean'),] + # change readname eg: CU5DAY0_R0759-S0001_A64199_CU5DAY0A10_HTKKKDRXY_GGAGCTAC-AGAGGATA_L002 -> CU5DAY0A10 + if (F) { + replace_readname <- function(newname, oldnames){ + return(which(grepl(pattern = paste0(newname,'_'), oldnames) )) + # return index to oldname element: oldnames[idx] <- newname + } + idx_oldnames <- sapply(X = colnames(sce), FUN = replace_readname, oldnames=maprate_df$readname) + maprate_df$Cell <- "" + maprate_df$Cell[idx_oldnames] <- colnames(sce) + } + + # add mapping rate to sce + sce$map_rate <- 0 + sce$map_rate <- sapply(sce$fastqname, + FUN = function(colname) maprate_df$map_rate[which(colname==maprate_df$readname)]) + sce$outlier_mapping_rate <- sce$map_rate<50 + + sce$outlier_hits <- sce$outlier_pct_MT + sce$outlier_mapping_rate + + #saving per cell stats in a table + per_cell_metric <- c("plate_id","plate_position", "outlier_hits","fastqname", + "outlier_pct_MT" ,"outlier_mapping_rate", "sum", "detected","unique_sample_id_suffix", + "subsets_mitochondrial_percent", "subsets_ERCC_percent", "map_rate") + + per_cell_table <- as.data.frame(colData(sce)[, per_cell_metric]) + per_cell_table$is_cell_control = F + per_cell_table$is_cell_control[inds_cellctrl] <- T + + if (F) { # Vlad's setting + rownames(per_cell_table) <- rownames(per_cell_table) %>% + gsub("_[CATG]{8}-[CATG]{8}","",.) + sample_names <- per_cell_table %>% rownames + per_cell_table$sample_ID <- sample_names + per_cell_table <- per_cell_table %>% select(sample_ID, everything()) + write.table(per_cell_table, paste0("Per_sample_key_metrics_",plate_id,".tsv"), + sep='\t', row.names = F) + + double_outliers <- which(per_cell_table$outlier_hits==2) %>% sample_names[.] + single_outliers <- which(per_cell_table$outlier_hits==1) %>% sample_names[.] + } + + rownames(per_cell_table) <- per_cell_table$fastqname + double_outliers <- which(per_cell_table$outlier_hits==2) %>% per_cell_table$unique_sample_id_suffix[.] + single_outliers <- which(per_cell_table$outlier_hits==1) %>% per_cell_table$unique_sample_id_suffix[.] + per_cell_table <- subset(per_cell_table, select=-c(unique_sample_id_suffix)) + write.table(per_cell_table, paste0("Per_sample_key_metrics_",plate_id,".tsv"), + sep='\t', row.names = F) + + # plot Mapping_rate_X.pdf + pdf(paste0("Mapping_rate_",plate_id,".pdf"), pointsize = 12) + cellctrl_flag <- NULL + if(length(inds_cellctrl)>0){ + cellctrl_flag <- "control" + } + + meta1_flag <- NULL + if (length(unique(sce$meta1))>1) meta1_flag <- 'meta1' + meta2_flag <- NULL + if (length(unique(sce$meta2))>1) meta2_flag <- 'meta2' + + # optimal display: + call_plotColData <- function(sce=NULL, x = "sum",y = "map_rate", + colour_by = NULL, size_by= NULL, shape_by=NULL, + cellsize_flip_flag=F, nbcell_markersize=NULL) { + + p <- plotColData(sce, x = x,y = y, + colour_by = colour_by, size_by= size_by, shape_by=shape_by) + p <- p+scale_x_log10() + if (cellsize_flip_flag) p <- p + scale_size_manual(values=nbcell_markersize) + + p <- p+theme(legend.position = "right") + xlab("log_total_counts") + ylab("kallisto mapping rate") + + labs(title="Read mapping rate ~ total counts (log scale)") + return(p) + } + plot_mapping_rate <- list() + idx_plot <- 1 + if (!is.null(cellctrl_flag)){ + colour_by = cellctrl_flag + size_by= nbcell_flag + shape_by=NULL + if (!is.null(meta1_flag)){ + shape_by=meta1_flag + plot_mapping_rate[[idx_plot]] <- call_plotColData(sce, colour_by = colour_by, size_by= size_by, + cellsize_flip_flag=cellsize_flip_flag, shape_by=meta1_flag, nbcell_markersize=nbcell_markersize) + plot(plot_mapping_rate[[idx_plot]]) + idx_plot <- idx_plot+1 + } + if (!is.null(meta2_flag)){ + shape_by=meta2_flag + plot_mapping_rate[[idx_plot]] <- call_plotColData(sce, colour_by = colour_by, size_by= size_by, + cellsize_flip_flag=cellsize_flip_flag, shape_by=meta2_flag,nbcell_markersize=nbcell_markersize) + plot(plot_mapping_rate[[idx_plot]]) + idx_plot <- idx_plot+1 + } + if(is.null(meta1_flag) & is.null(meta2_flag)){ + plot_mapping_rate[[idx_plot]] <- call_plotColData(sce, colour_by = colour_by, size_by= size_by, + cellsize_flip_flag=cellsize_flip_flag, shape_by=NULL, nbcell_markersize=nbcell_markersize) + plot(plot_mapping_rate[[idx_plot]]) + idx_plot <- idx_plot+1 + } + } else { + size_by=nbcell_flag + shape_by=NULL + colour_by=NULL + if (!is.null(meta1_flag)){ + plot_mapping_rate[[idx_plot]] <- call_plotColData(sce, colour_by=meta1_flag, size_by= size_by, + cellsize_flip_flag=cellsize_flip_flag, shape_by=shape_by, nbcell_markersize=nbcell_markersize) + plot(plot_mapping_rate[[idx_plot]]) + idx_plot <- idx_plot+1 + } + if (!is.null(meta2_flag)){ + plot_mapping_rate[[idx_plot]] <- call_plotColData(sce, colour_by=meta2_flag, size_by= size_by, + cellsize_flip_flag=cellsize_flip_flag, shape_by=shape_by, nbcell_markersize=nbcell_markersize) + plot(plot_mapping_rate[[idx_plot]]) + idx_plot <- idx_plot+1 + } + if(is.null(meta1_flag) & is.null(meta2_flag)){ + plot_mapping_rate[[idx_plot]] <- call_plotColData(sce, colour_by=NULL, size_by= size_by, + cellsize_flip_flag=cellsize_flip_flag, shape_by=shape_by, nbcell_markersize=nbcell_markersize) + plot(plot_mapping_rate[[idx_plot]]) + idx_plot <- idx_plot+1 + } + } + dev.off() + + +# ===== 8. save work space for doc compilation ==== + save(plot_cumulative_dist, plot_highest_expression, plot_expr_vs_mean, plot_featurenum_vs_counts, + plot_ercc_scatter, plot_mito_scatter, + plot_plate_counts, plot_plate_mito, plot_plate_ercc,plot_violin_scatter,plot_mapping_rate, + plot_pca, plot_pca_ctr, + per_cell_table, ercc_table, per_cell_metric, + double_outliers, single_outliers, + plate_id,inds_cellctrl, + sce, + file=paste0(plate_id,"qc_for_doc.Rdata")) + + metadata.cell <- colData(sce) + rownames(metadata.cell) <- metadata.cell$fastqname; + write.table(x = metadata.cell, sep = '\t', + file = paste0(plate_id, ".metadata_cell.tsv")) + + metadata.transcript <- rowData(sce) + write.table(x = metadata.transcript, sep = '\t', + file = paste0(plate_id, ".metadata_transcript.tsv")) + + # test loading into Seurat + if (F){ + # for human control + output_location="/Volumes/core-bioinformatics/development/lany/CB-GENANNO-523_Karim_Gharbi_EI_KG_ENQ-3708/Analysis/scqc_reqs-0.2.2/run1/qc_dir/" + plate_id <- "R0121-P0002" + # load expression matrix + raw_counts <- read.table(file=file.path(output_location, '../quants_dir', + paste0("est_counts",plate_id,"_matrix.tsv")), + header = T, check.names = F) + # for cowseq3 + plate_id <- "all" + output_location <- "/Volumes/core-bioinformatics/analysis/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Analysis/scqc_reqs-0.2.1/run1/qc_dir" + # load expression matrix + raw_counts <- read.table(file=file.path(output_location, '../quants_dir', + "all_plates.tsv"), header = T, check.names = F) + # for PPBFX-1067_Claudia_Ribeiro_de_Almeida + plate_id <- "all" + output_location <- "/ei/cb/analysis/CB-PPBFX-1067_Claudia_Ribeiro_de_Almeida_BI_CR_ENQ-5220_A_01_Smart-Seq2_QC/Analysis/scqc_reqs-0.2.2/run2/qc_dir" + # load expression matrix + raw_counts <- read.table(file=file.path(output_location, '../quants_dir', + "all_plates.tsv"), header = T, check.names = F) + + # for GENANNO-543_Stuart_Rushworth_UOE_SR + plate_id <- "all" + output_location <- "/ei/cb/analysis/CB-GENANNO-543_Stuart_Rushworth_UOE_SR_ENQ-5327_A_01/Analysis/scqc_reqs-0.2.2/run1/qc_dir" + # load expression matrix + raw_counts <- read.table(file=file.path(output_location, '../quants_dir', + "all_plates.tsv"), header = T, check.names = F) + library("Seurat") + + raw_counts[1:3,1:2] + mydata <- CreateSeuratObject(counts=raw_counts, min.cells = 3, min.features = 200, project = 'human') + + # load meta data + celltsvfile <- file.path(output_location, paste0(plate_id, ".metadata_cell.tsv")) + cellmeta <- read.table(file=celltsvfile, header = T, check.names = F) + dim(cellmeta) + cellmeta[1:2,1:2] + colnames(cellmeta) + nrow(cellmeta) + ncol(mydata) + mydata <- AddMetaData(mydata, metadata = cellmeta) + # show metadata + head(mydata[[]]) + head(mydata@meta.data) + # or add a selected meta data field "dummy" + mydata$dummy <- "dummy" + head(mydata@meta.data$dummy) + + # ===== 1.3: add feature meta data ==== + featuretsvfile <- file.path(output_location, paste0(plate_id, ".metadata_transcript.tsv")) + featmeta <- read.table(file=featuretsvfile, header = T, check.names = F) + featmeta[1:2,1:2] + # > featmeta[1:2,1:2] + # detected subsets_cellctrl_mean + # TpMuguga-02g00001-t1 0.2604167 0 + # TpMuguga-02g00002-t1 0.0000000 0 + + # keys for successfully loading cell meta data: + # 1. featmeta is a dataframe, using feature as rownames, + # some features may have been filtered out of the count matrix (mydata[[]]) + # 2. featmeta colnames are meta data fields. + + colnames(featmeta) + # change TpMuguga_02g00003_t1 to TpMuguga-02g00003-t1 + newrowname <- gsub('_','-',rownames(featmeta)) %>% gsub('\\|','-',.) + + rownames(featmeta) <- newrowname + featmeta[1:2,1:2] + nrow(featmeta) + nrow(mydata) # dim(mydata[["RNA"]]) + mydata[["RNA"]] <- AddMetaData(mydata[["RNA"]], metadata = featmeta) + head(mydata[['RNA']][1:2,1:6]) + mydata[['RNA']]@meta.features[1:3,] + + } + + # test loading into seurat for PPBFX-1067 Claudia Ribeiro de Almeida BI.CR.ENQ-5220.A.01 Smart-Seq 2 QC + if (F) { + plate_id <- "all" + output_location <- "/ei/cb/analysis/CB-PPBFX-1067_Claudia_Ribeiro_de_Almeida_BI_CR_ENQ-5220_A_01_Smart-Seq2_QC/Analysis/scqc_reqs-0.2.2/run2/qc_dir" + # load expression matrix + raw_counts <- read.table(file=file.path(output_location, '../quants_dir', + "all_plates.tsv"), header = T, check.names = F) + + library("Seurat") + + raw_counts[1:3,1:2] + mydata <- CreateSeuratObject(counts=raw_counts, min.cells = 3, min.features = 200, project = 'mouse') + + # load meta data + celltsvfile <- file.path(output_location, paste0(plate_id, ".metadata_cell.tsv")) + cellmeta <- read.table(file=celltsvfile, header = T, check.names = F) + dim(cellmeta) + cellmeta[1:2,1:2] + colnames(cellmeta) + nrow(cellmeta) + ncol(mydata) + mydata <- AddMetaData(mydata, metadata = cellmeta) + # show metadata + head(mydata[[]]) + head(mydata@meta.data) + # or add a selected meta data field "dummy" + mydata$dummy <- "dummy" + head(mydata@meta.data$dummy) + + # ===== 1.3: add feature meta data ==== + featuretsvfile <- file.path(output_location, paste0(plate_id, ".metadata_transcript.tsv")) + featmeta <- read.table(file=featuretsvfile, header = T, check.names = F) + featmeta[1:2,1:2] + # > featmeta[1:2,1:2] + # detected subsets_cellctrl_mean + # TpMuguga-02g00001-t1 0.2604167 0 + # TpMuguga-02g00002-t1 0.0000000 0 + + # keys for successfully loading cell meta data: + # 1. featmeta is a dataframe, using feature as rownames, + # some features may have been filtered out of the count matrix (mydata[[]]) + # 2. featmeta colnames are meta data fields. + + colnames(featmeta) + # change TpMuguga_02g00003_t1 to TpMuguga-02g00003-t1 + newrowname <- gsub('_','-',rownames(featmeta)) %>% gsub('\\|','-',.) + + rownames(featmeta) <- newrowname + featmeta[1:2,1:2] + nrow(featmeta) + nrow(mydata) # dim(mydata[["RNA"]]) + mydata[["RNA"]] <- AddMetaData(mydata[["RNA"]], metadata = featmeta) + head(mydata[['RNA']][1:2,1:6]) + mydata[['RNA']]@meta.features[1:3,] + + +} +} +if(sys.nframe()==0){ + outloc <- "./" + sheetfile <- NULL + mtrds <- NULL + args=commandArgs(trailingOnly=T) + + if(!file.exists(args[1])) + stop(paste0("Matrix file ('",args[1],"') not found!")) + if(!file.exists(args[2])) + stop(paste0("kallisto psudo align mapping file ('",args[2],"') not found!")) + if(length(args)>=3){ + outloc <- args[3] + if(!file.exists(outloc)){ + warning(paste0("Output directory ('",outloc,"') does not exist!"), + "\nCreating the directory...") + system(paste("mkdir -p",outloc)) + } + } + if(length(args)>=4) + sheetfile <- args[4] + if(length(args)>=5) + mtrds <- args[5] + + scqc_from_tsv(args[1], args[2], outloc, sheetfile, mtrds) +} diff --git a/SmartSeq2_test4_details.csv b/SmartSeq2_test4_details.csv deleted file mode 100644 index d33033f..0000000 --- a/SmartSeq2_test4_details.csv +++ /dev/null @@ -1,385 +0,0 @@ -original_order,sample_number,experiment,cdna_plate_number,plate_id,row,column,sample_reference,unique_sample_id_suffix,sort_guid,cell_phenotype,cell_type,number_of_cells,ercc_(bool),total_rna_(bool),control_(bool),cdna_gx_run,cdna_gx_well,cdna_present_(bool),region[400-6500]_on_plate_molarity_nM,nextera_barcode_plate,well,p7_barcode_id,p7_barcode,p5_barcode_id,p5_barcode,index_tag -1,1,SmartSeq2_Test4,1,V1a,A,1,1V1aA01s385,s385,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,A1,TRUE,0.238701054,1,A01,N701,TAAGGCGA,S502,CTCTCTAT,TAAGGCGA-CTCTCTAT -2,9,SmartSeq2_Test4,1,V1a,A,2,1V1aA02s393,s393,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,A3,TRUE,0.418976112,1,A02,N702,CGTACTAG,S502,CTCTCTAT,CGTACTAG-CTCTCTAT -3,17,SmartSeq2_Test4,1,V1a,A,3,1V1aA03s401,s401,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,A5,TRUE,no data,1,A03,N703,AGGCAGAA,S502,CTCTCTAT,AGGCAGAA-CTCTCTAT -4,25,SmartSeq2_Test4,1,V1a,A,4,1V1aA04s409,s409,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,A7,TRUE,0.538233181,1,A04,N704,TCCTGAGC,S502,CTCTCTAT,TCCTGAGC-CTCTCTAT -5,33,SmartSeq2_Test4,1,V1a,A,5,1V1aA05s417,s417,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,A9,TRUE,0.505119941,1,A05,N705,GGACTCCT,S502,CTCTCTAT,GGACTCCT-CTCTCTAT -6,41,SmartSeq2_Test4,1,V1a,A,6,1V1aA06s425,s425,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,A11,TRUE,0.431899246,1,A06,N706,TAGGCATG,S502,CTCTCTAT,TAGGCATG-CTCTCTAT -7,49,SmartSeq2_Test4,1,V1a,A,7,1V1aA07s433,s433,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,A13,TRUE,0.385849471,1,A07,N707,CTCTCTAC,S502,CTCTCTAT,CTCTCTAC-CTCTCTAT -8,57,SmartSeq2_Test4,1,V1a,A,8,1V1aA08s441,s441,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,A15,TRUE,0.590068846,1,A08,N710,CGAGGCTG,S502,CTCTCTAT,CGAGGCTG-CTCTCTAT -9,65,SmartSeq2_Test4,1,V1a,A,9,1V1aA09s449,s449,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,A17,TRUE,0.520105635,1,A09,N711,AAGAGGCA,S502,CTCTCTAT,AAGAGGCA-CTCTCTAT -10,73,SmartSeq2_Test4,1,V1a,A,10,1V1aA10s457,s457,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,A19,TRUE,0.63675537,1,A10,N712,GTAGAGGA,S502,CTCTCTAT,GTAGAGGA-CTCTCTAT -11,81,SmartSeq2_Test4,1,V1a,A,11,1V1aA11s465,s465,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,A21,TRUE,0.352839568,1,A11,N714,GCTCATGA,S502,CTCTCTAT,GCTCATGA-CTCTCTAT -12,89,SmartSeq2_Test4,1,V1a,A,12,1V1aA12c473,c473,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos_and_neg,Jurkat _and_K562,50,TRUE,FALSE,TRUE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,A23,TRUE,1.788260099,1,A12,N715,ATCTCAGG,S502,CTCTCTAT,ATCTCAGG-CTCTCTAT -13,2,SmartSeq2_Test4,1,V1a,B,1,1V1aB01s386,s386,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,C1,FALSE,na,1,B01,N701,TAAGGCGA,S503,TATCCTCT,TAAGGCGA-TATCCTCT -14,10,SmartSeq2_Test4,1,V1a,B,2,1V1aB02s394,s394,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,C3,TRUE,0.181488561,1,B02,N702,CGTACTAG,S503,TATCCTCT,CGTACTAG-TATCCTCT -15,18,SmartSeq2_Test4,1,V1a,B,3,1V1aB03d402,d402,211fc874-00dd-45c3-bd53-dffa2a9403f1;9ef65c56-7666-4ee9-850e-c99205dd9d27,CD3_pos,Jurkat,2,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,C5,TRUE,0.112963763,1,B03,N703,AGGCAGAA,S503,TATCCTCT,AGGCAGAA-TATCCTCT -16,26,SmartSeq2_Test4,1,V1a,B,4,1V1aB04s410,s410,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,C7,TRUE,0.481854915,1,B04,N704,TCCTGAGC,S503,TATCCTCT,TCCTGAGC-TATCCTCT -17,34,SmartSeq2_Test4,1,V1a,B,5,1V1aB05s418,s418,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,C9,TRUE,0.488875069,1,B05,N705,GGACTCCT,S503,TATCCTCT,GGACTCCT-TATCCTCT -18,42,SmartSeq2_Test4,1,V1a,B,6,1V1aB06s426,s426,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,C11,TRUE,0.75047283,1,B06,N706,TAGGCATG,S503,TATCCTCT,TAGGCATG-TATCCTCT -19,50,SmartSeq2_Test4,1,V1a,B,7,1V1aB07s434,s434,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,C13,TRUE,0.189641414,1,B07,N707,CTCTCTAC,S503,TATCCTCT,CTCTCTAC-TATCCTCT -20,58,SmartSeq2_Test4,1,V1a,B,8,1V1aB08s442,s442,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,C15,TRUE,0.25727352,1,B08,N710,CGAGGCTG,S503,TATCCTCT,CGAGGCTG-TATCCTCT -21,66,SmartSeq2_Test4,1,V1a,B,9,1V1aB09s450,s450,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,C17,FALSE,na,1,B09,N711,AAGAGGCA,S503,TATCCTCT,AAGAGGCA-TATCCTCT -22,74,SmartSeq2_Test4,1,V1a,B,10,1V1aB10s458,s458,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,C19,TRUE,0.175796792,1,B10,N712,GTAGAGGA,S503,TATCCTCT,GTAGAGGA-TATCCTCT -23,82,SmartSeq2_Test4,1,V1a,B,11,1V1aB11s466,s466,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,C21,TRUE,0.544878658,1,B11,N714,GCTCATGA,S503,TATCCTCT,GCTCATGA-TATCCTCT -24,90,SmartSeq2_Test4,1,V1a,B,12,1V1aB12c474,c474,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos_and_neg,Jurkat _and_K562,20,TRUE,FALSE,TRUE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,C23,TRUE,2.486388747,1,B12,N715,ATCTCAGG,S503,TATCCTCT,ATCTCAGG-TATCCTCT -25,3,SmartSeq2_Test4,1,V1a,C,1,1V1aC01s387,s387,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,E1,TRUE,0.166532037,1,C01,N701,TAAGGCGA,S505,GTAAGGAG,TAAGGCGA-GTAAGGAG -26,11,SmartSeq2_Test4,1,V1a,C,2,1V1aC02s395,s395,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,E3,TRUE,0.465896625,1,C02,N702,CGTACTAG,S505,GTAAGGAG,CGTACTAG-GTAAGGAG -27,19,SmartSeq2_Test4,1,V1a,C,3,1V1aC03s403,s403,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,E5,TRUE,0.253045918,1,C03,N703,AGGCAGAA,S505,GTAAGGAG,AGGCAGAA-GTAAGGAG -28,27,SmartSeq2_Test4,1,V1a,C,4,1V1aC04s411,s411,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,E7,TRUE,0.433164937,1,C04,N704,TCCTGAGC,S505,GTAAGGAG,TCCTGAGC-GTAAGGAG -29,35,SmartSeq2_Test4,1,V1a,C,5,1V1aC05s419,s419,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,E9,TRUE,0.165037818,1,C05,N705,GGACTCCT,S505,GTAAGGAG,GGACTCCT-GTAAGGAG -30,43,SmartSeq2_Test4,1,V1a,C,6,1V1aC06s427,s427,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,E11,TRUE,0.476757041,1,C06,N706,TAGGCATG,S505,GTAAGGAG,TAGGCATG-GTAAGGAG -31,51,SmartSeq2_Test4,1,V1a,C,7,1V1aC07s435,s435,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,E13,TRUE,0.386167973,1,C07,N707,CTCTCTAC,S505,GTAAGGAG,CTCTCTAC-GTAAGGAG -32,59,SmartSeq2_Test4,1,V1a,C,8,1V1aC08s443,s443,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,E15,TRUE,0.160815341,1,C08,N710,CGAGGCTG,S505,GTAAGGAG,CGAGGCTG-GTAAGGAG -33,67,SmartSeq2_Test4,1,V1a,C,9,1V1aC09s451,s451,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,E17,TRUE,0.150055317,1,C09,N711,AAGAGGCA,S505,GTAAGGAG,AAGAGGCA-GTAAGGAG -34,75,SmartSeq2_Test4,1,V1a,C,10,1V1aC10s459,s459,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,E19,TRUE,0.245416537,1,C10,N712,GTAGAGGA,S505,GTAAGGAG,GTAGAGGA-GTAAGGAG -35,83,SmartSeq2_Test4,1,V1a,C,11,1V1aC11d467,d467,211fc874-00dd-45c3-bd53-dffa2a9403f1;9ef65c56-7666-4ee9-850e-c99205dd9d27,CD3_pos_and_neg,Jurkat _and_K562,2,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,E21,TRUE,1.169284302,1,C11,N714,GCTCATGA,S505,GTAAGGAG,GCTCATGA-GTAAGGAG -36,91,SmartSeq2_Test4,1,V1a,C,12,1V1aC12c475,c475,211fc874-00dd-45c3-bd53-dffa2a9403f1,na,na,0,TRUE,FALSE,TRUE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,E23,TRUE,0.097730097,1,C12,N715,ATCTCAGG,S505,GTAAGGAG,ATCTCAGG-GTAAGGAG -37,4,SmartSeq2_Test4,1,V1a,D,1,1V1aD01s388,s388,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,G1,TRUE,0.111219753,1,D01,N701,TAAGGCGA,S506,ACTGCATA,TAAGGCGA-ACTGCATA -38,12,SmartSeq2_Test4,1,V1a,D,2,1V1aD02s396,s396,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,G3,TRUE,0.211969956,1,D02,N702,CGTACTAG,S506,ACTGCATA,CGTACTAG-ACTGCATA -39,20,SmartSeq2_Test4,1,V1a,D,3,1V1aD03s404,s404,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,G5,TRUE,0.312580462,1,D03,N703,AGGCAGAA,S506,ACTGCATA,AGGCAGAA-ACTGCATA -40,28,SmartSeq2_Test4,1,V1a,D,4,1V1aD04d412,d412,211fc874-00dd-45c3-bd53-dffa2a9403f1;9ef65c56-7666-4ee9-850e-c99205dd9d27,CD3_neg,K562,2,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,G7,TRUE,0.982071928,1,D04,N704,TCCTGAGC,S506,ACTGCATA,TCCTGAGC-ACTGCATA -41,36,SmartSeq2_Test4,1,V1a,D,5,1V1aD05s420,s420,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,G9,TRUE,0.468420138,1,D05,N705,GGACTCCT,S506,ACTGCATA,GGACTCCT-ACTGCATA -42,44,SmartSeq2_Test4,1,V1a,D,6,1V1aD06s428,s428,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,G11,TRUE,0.272744567,1,D06,N706,TAGGCATG,S506,ACTGCATA,TAGGCATG-ACTGCATA -43,52,SmartSeq2_Test4,1,V1a,D,7,1V1aD07s436,s436,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,G13,TRUE,0.559979608,1,D07,N707,CTCTCTAC,S506,ACTGCATA,CTCTCTAC-ACTGCATA -44,60,SmartSeq2_Test4,1,V1a,D,8,1V1aD08s444,s444,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,G15,TRUE,0.41448769,1,D08,N710,CGAGGCTG,S506,ACTGCATA,CGAGGCTG-ACTGCATA -45,68,SmartSeq2_Test4,1,V1a,D,9,1V1aD09s452,s452,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,G17,TRUE,0.588482193,1,D09,N711,AAGAGGCA,S506,ACTGCATA,AAGAGGCA-ACTGCATA -46,76,SmartSeq2_Test4,1,V1a,D,10,1V1aD10s460,s460,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,G19,TRUE,0.132848686,1,D10,N712,GTAGAGGA,S506,ACTGCATA,GTAGAGGA-ACTGCATA -47,84,SmartSeq2_Test4,1,V1a,D,11,1V1aD11s468,s468,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,G21,TRUE,0.562812836,1,D11,N714,GCTCATGA,S506,ACTGCATA,GCTCATGA-ACTGCATA -48,92,SmartSeq2_Test4,1,V1a,D,12,1V1aD12c476,c476,211fc874-00dd-45c3-bd53-dffa2a9403f1,na,na,0,FALSE,FALSE,TRUE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,G23,TRUE,0.007273178,1,D12,N715,ATCTCAGG,S506,ACTGCATA,ATCTCAGG-ACTGCATA -49,5,SmartSeq2_Test4,1,V1a,E,1,1V1aE01s389,s389,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,I1,TRUE,0.222597023,1,E01,N701,TAAGGCGA,S507,AAGGAGTA,TAAGGCGA-AAGGAGTA -50,13,SmartSeq2_Test4,1,V1a,E,2,1V1aE02s397,s397,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,I3,TRUE,0.506169586,1,E02,N702,CGTACTAG,S507,AAGGAGTA,CGTACTAG-AAGGAGTA -51,21,SmartSeq2_Test4,1,V1a,E,3,1V1aE03s405,s405,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,I5,TRUE,0.346747864,1,E03,N703,AGGCAGAA,S507,AAGGAGTA,AGGCAGAA-AAGGAGTA -52,29,SmartSeq2_Test4,1,V1a,E,4,1V1aE04s413,s413,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,I7,TRUE,0.695117723,1,E04,N704,TCCTGAGC,S507,AAGGAGTA,TCCTGAGC-AAGGAGTA -53,37,SmartSeq2_Test4,1,V1a,E,5,1V1aE05s421,s421,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,I9,TRUE,0.156960631,1,E05,N705,GGACTCCT,S507,AAGGAGTA,GGACTCCT-AAGGAGTA -54,45,SmartSeq2_Test4,1,V1a,E,6,1V1aE06s429,s429,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,I11,TRUE,0.150505561,1,E06,N706,TAGGCATG,S507,AAGGAGTA,TAGGCATG-AAGGAGTA -55,53,SmartSeq2_Test4,1,V1a,E,7,1V1aE07s437,s437,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,I13,TRUE,0.155892052,1,E07,N707,CTCTCTAC,S507,AAGGAGTA,CTCTCTAC-AAGGAGTA -56,61,SmartSeq2_Test4,1,V1a,E,8,1V1aE08s445,s445,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,I15,TRUE,0.27626242,1,E08,N710,CGAGGCTG,S507,AAGGAGTA,CGAGGCTG-AAGGAGTA -57,69,SmartSeq2_Test4,1,V1a,E,9,1V1aE09s453,s453,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,I17,TRUE,1.170105008,1,E09,N711,AAGAGGCA,S507,AAGGAGTA,AAGAGGCA-AAGGAGTA -58,77,SmartSeq2_Test4,1,V1a,E,10,1V1aE10s461,s461,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,I19,TRUE,0.198093309,1,E10,N712,GTAGAGGA,S507,AAGGAGTA,GTAGAGGA-AAGGAGTA -59,85,SmartSeq2_Test4,1,V1a,E,11,1V1aE11s469,s469,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,I21,TRUE,0.25878001,1,E11,N714,GCTCATGA,S507,AAGGAGTA,GCTCATGA-AAGGAGTA -60,93,SmartSeq2_Test4,1,V1a,E,12,1V1aE12c477,c477,211fc874-00dd-45c3-bd53-dffa2a9403f1,na,na,0,TRUE,TRUE,TRUE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,I23,TRUE,1.04402337,1,E12,N715,ATCTCAGG,S507,AAGGAGTA,ATCTCAGG-AAGGAGTA -61,6,SmartSeq2_Test4,1,V1a,F,1,1V1aF01s390,s390,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,K1,TRUE,0.164305308,1,F01,N701,TAAGGCGA,S508,CTAAGCCT,TAAGGCGA-CTAAGCCT -62,14,SmartSeq2_Test4,1,V1a,F,2,1V1aF02s398,s398,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,K3,TRUE,0.301763962,1,F02,N702,CGTACTAG,S508,CTAAGCCT,CGTACTAG-CTAAGCCT -63,22,SmartSeq2_Test4,1,V1a,F,3,1V1aF03s406,s406,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,K5,TRUE,0.464828139,1,F03,N703,AGGCAGAA,S508,CTAAGCCT,AGGCAGAA-CTAAGCCT -64,30,SmartSeq2_Test4,1,V1a,F,4,1V1aF04s414,s414,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,K7,TRUE,0.504979939,1,F04,N704,TCCTGAGC,S508,CTAAGCCT,TCCTGAGC-CTAAGCCT -65,38,SmartSeq2_Test4,1,V1a,F,5,1V1aF05s422,s422,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,K9,TRUE,0.280061921,1,F05,N705,GGACTCCT,S508,CTAAGCCT,GGACTCCT-CTAAGCCT -66,46,SmartSeq2_Test4,1,V1a,F,6,1V1aF06s430,s430,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,K11,TRUE,0.437452113,1,F06,N706,TAGGCATG,S508,CTAAGCCT,TAGGCATG-CTAAGCCT -67,54,SmartSeq2_Test4,1,V1a,F,7,1V1aF07s438,s438,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,K13,FALSE,na,1,F07,N707,CTCTCTAC,S508,CTAAGCCT,CTCTCTAC-CTAAGCCT -68,62,SmartSeq2_Test4,1,V1a,F,8,1V1aF08s446,s446,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,K15,TRUE,1.284430565,1,F08,N710,CGAGGCTG,S508,CTAAGCCT,CGAGGCTG-CTAAGCCT -69,70,SmartSeq2_Test4,1,V1a,F,9,1V1aF09d454,d454,211fc874-00dd-45c3-bd53-dffa2a9403f1;9ef65c56-7666-4ee9-850e-c99205dd9d27,CD3_pos,Jurkat,2,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,K17,TRUE,1.17507197,1,F09,N711,AAGAGGCA,S508,CTAAGCCT,AAGAGGCA-CTAAGCCT -70,78,SmartSeq2_Test4,1,V1a,F,10,1V1aF10s462,s462,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,K19,TRUE,0.86112986,1,F10,N712,GTAGAGGA,S508,CTAAGCCT,GTAGAGGA-CTAAGCCT -71,86,SmartSeq2_Test4,1,V1a,F,11,1V1aF11s470,s470,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,K21,TRUE,0.58576887,1,F11,N714,GCTCATGA,S508,CTAAGCCT,GCTCATGA-CTAAGCCT -72,94,SmartSeq2_Test4,1,V1a,F,12,1V1aF12c478,c478,211fc874-00dd-45c3-bd53-dffa2a9403f1,na,na,0,TRUE,FALSE,TRUE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,K23,TRUE,0.063868434,1,F12,N715,ATCTCAGG,S508,CTAAGCCT,ATCTCAGG-CTAAGCCT -73,7,SmartSeq2_Test4,1,V1a,G,1,1V1aG01d391,d391,211fc874-00dd-45c3-bd53-dffa2a9403f1;9ef65c56-7666-4ee9-850e-c99205dd9d27,CD3_pos_and_neg,Jurkat _and_K562,2,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,M1,TRUE,0.139400589,1,G01,N701,TAAGGCGA,S510,CGTCTAAT,TAAGGCGA-CGTCTAAT -74,15,SmartSeq2_Test4,1,V1a,G,2,1V1aG02s399,s399,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,M3,TRUE,0.593662161,1,G02,N702,CGTACTAG,S510,CGTCTAAT,CGTACTAG-CGTCTAAT -75,23,SmartSeq2_Test4,1,V1a,G,3,1V1aG03s407,s407,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,M5,TRUE,0.132730156,1,G03,N703,AGGCAGAA,S510,CGTCTAAT,AGGCAGAA-CGTCTAAT -76,31,SmartSeq2_Test4,1,V1a,G,4,1V1aG04s415,s415,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,M7,TRUE,0.330965804,1,G04,N704,TCCTGAGC,S510,CGTCTAAT,TCCTGAGC-CGTCTAAT -77,39,SmartSeq2_Test4,1,V1a,G,5,1V1aG05s423,s423,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,M9,TRUE,0.367456111,1,G05,N705,GGACTCCT,S510,CGTCTAAT,GGACTCCT-CGTCTAAT -78,47,SmartSeq2_Test4,1,V1a,G,6,1V1aG06s431,s431,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,M11,TRUE,0.302335045,1,G06,N706,TAGGCATG,S510,CGTCTAAT,TAGGCATG-CGTCTAAT -79,55,SmartSeq2_Test4,1,V1a,G,7,1V1aG07s439,s439,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,M13,TRUE,0.131517692,1,G07,N707,CTCTCTAC,S510,CGTCTAAT,CTCTCTAC-CGTCTAAT -80,63,SmartSeq2_Test4,1,V1a,G,8,1V1aG08d447,d447,211fc874-00dd-45c3-bd53-dffa2a9403f1;9ef65c56-7666-4ee9-850e-c99205dd9d27,CD3_neg,K562,2,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,M15,TRUE,1.157188639,1,G08,N710,CGAGGCTG,S510,CGTCTAAT,CGAGGCTG-CGTCTAAT -81,71,SmartSeq2_Test4,1,V1a,G,9,1V1aG09s455,s455,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,M17,TRUE,0.914364277,1,G09,N711,AAGAGGCA,S510,CGTCTAAT,AAGAGGCA-CGTCTAAT -82,79,SmartSeq2_Test4,1,V1a,G,10,1V1aG10s463,s463,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,M19,TRUE,0.508501603,1,G10,N712,GTAGAGGA,S510,CGTCTAAT,GTAGAGGA-CGTCTAAT -83,87,SmartSeq2_Test4,1,V1a,G,11,1V1aG11s471,s471,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,M21,TRUE,0.908221235,1,G11,N714,GCTCATGA,S510,CGTCTAAT,GCTCATGA-CGTCTAAT -84,95,SmartSeq2_Test4,1,V1a,G,12,1V1aG12c479,c479,211fc874-00dd-45c3-bd53-dffa2a9403f1,na,na,0,TRUE,FALSE,TRUE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,M23,TRUE,0.513734417,1,G12,N715,ATCTCAGG,S510,CGTCTAAT,ATCTCAGG-CGTCTAAT -85,8,SmartSeq2_Test4,1,V1a,H,1,1V1aH01s392,s392,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,O1,TRUE,0.144061118,1,H01,N701,TAAGGCGA,S511,TCTCTCCG,TAAGGCGA-TCTCTCCG -86,16,SmartSeq2_Test4,1,V1a,H,2,1V1aH02s400,s400,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,O3,TRUE,0.09361186,1,H02,N702,CGTACTAG,S511,TCTCTCCG,CGTACTAG-TCTCTCCG -87,24,SmartSeq2_Test4,1,V1a,H,3,1V1aH03s408,s408,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,O5,TRUE,0.11709946,1,H03,N703,AGGCAGAA,S511,TCTCTCCG,AGGCAGAA-TCTCTCCG -88,32,SmartSeq2_Test4,1,V1a,H,4,1V1aH04s416,s416,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,O7,TRUE,0.67858429,1,H04,N704,TCCTGAGC,S511,TCTCTCCG,TCCTGAGC-TCTCTCCG -89,40,SmartSeq2_Test4,1,V1a,H,5,1V1aH05s424,s424,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,O9,TRUE,0.879076993,1,H05,N705,GGACTCCT,S511,TCTCTCCG,GGACTCCT-TCTCTCCG -90,48,SmartSeq2_Test4,1,V1a,H,6,1V1aH06s432,s432,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,O11,TRUE,0.112256645,1,H06,N706,TAGGCATG,S511,TCTCTCCG,TAGGCATG-TCTCTCCG -91,56,SmartSeq2_Test4,1,V1a,H,7,1V1aH07s440,s440,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,O13,TRUE,0.644565862,1,H07,N707,CTCTCTAC,S511,TCTCTCCG,CTCTCTAC-TCTCTCCG -92,64,SmartSeq2_Test4,1,V1a,H,8,1V1aH08s448,s448,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,O15,TRUE,0.170438476,1,H08,N710,CGAGGCTG,S511,TCTCTCCG,CGAGGCTG-TCTCTCCG -93,72,SmartSeq2_Test4,1,V1a,H,9,1V1aH09s456,s456,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,O17,TRUE,1.214187202,1,H09,N711,AAGAGGCA,S511,TCTCTCCG,AAGAGGCA-TCTCTCCG -94,80,SmartSeq2_Test4,1,V1a,H,10,1V1aH10s464,s464,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,O19,TRUE,1.025643367,1,H10,N712,GTAGAGGA,S511,TCTCTCCG,GTAGAGGA-TCTCTCCG -95,88,SmartSeq2_Test4,1,V1a,H,11,1V1aH11s472,s472,211fc874-00dd-45c3-bd53-dffa2a9403f1,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,O21,TRUE,0.742065248,1,H11,N714,GCTCATGA,S511,TCTCTCCG,GCTCATGA-TCTCTCCG -96,96,SmartSeq2_Test4,1,V1a,H,12,1V1aH12c480,c480,211fc874-00dd-45c3-bd53-dffa2a9403f1,na,na,0,FALSE,FALSE,TRUE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,O23,TRUE,0,1,H12,N715,ATCTCAGG,S511,TCTCTCCG,ATCTCAGG-TCTCTCCG -97,97,SmartSeq2_Test4,2,V2a,A,1,2V2aA01s481,s481,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,B2,TRUE,0.197376038,2,A01,N701,TAAGGCGA,S513,TCGACTAG,TAAGGCGA-TCGACTAG -98,105,SmartSeq2_Test4,2,V2a,A,2,2V2aA02s489,s489,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,B4,TRUE,0.471266114,2,A02,N702,CGTACTAG,S513,TCGACTAG,CGTACTAG-TCGACTAG -99,113,SmartSeq2_Test4,2,V2a,A,3,2V2aA03s497,s497,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,B6,TRUE,0.417950099,2,A03,N703,AGGCAGAA,S513,TCGACTAG,AGGCAGAA-TCGACTAG -100,121,SmartSeq2_Test4,2,V2a,A,4,2V2aA04s505,s505,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,B8,TRUE,0.54389709,2,A04,N704,TCCTGAGC,S513,TCGACTAG,TCCTGAGC-TCGACTAG -101,129,SmartSeq2_Test4,2,V2a,A,5,2V2aA05s513,s513,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,B10,TRUE,0.468297277,2,A05,N705,GGACTCCT,S513,TCGACTAG,GGACTCCT-TCGACTAG -102,137,SmartSeq2_Test4,2,V2a,A,6,2V2aA06s521,s521,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,B12,TRUE,0.748483512,2,A06,N706,TAGGCATG,S513,TCGACTAG,TAGGCATG-TCGACTAG -103,145,SmartSeq2_Test4,2,V2a,A,7,2V2aA07s529,s529,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,B14,TRUE,0.315242277,2,A07,N707,CTCTCTAC,S513,TCGACTAG,CTCTCTAC-TCGACTAG -104,153,SmartSeq2_Test4,2,V2a,A,8,2V2aA08s537,s537,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,B16,TRUE,0.412354096,2,A08,N710,CGAGGCTG,S513,TCGACTAG,CGAGGCTG-TCGACTAG -105,161,SmartSeq2_Test4,2,V2a,A,9,2V2aA09s545,s545,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,B18,TRUE,0.570698607,2,A09,N711,AAGAGGCA,S513,TCGACTAG,AAGAGGCA-TCGACTAG -106,169,SmartSeq2_Test4,2,V2a,A,10,2V2aA10s553,s553,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,B20,TRUE,0.582079139,2,A10,N712,GTAGAGGA,S513,TCGACTAG,GTAGAGGA-TCGACTAG -107,177,SmartSeq2_Test4,2,V2a,A,11,2V2aA11s561,s561,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,B22,TRUE,0.31851707,2,A11,N714,GCTCATGA,S513,TCGACTAG,GCTCATGA-TCGACTAG -108,185,SmartSeq2_Test4,2,V2a,A,12,2V2aA12c569,c569,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos_and_neg,Jurkat _and_K562,50,TRUE,FALSE,TRUE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,B24,TRUE,315.5901379,2,A12,N715,ATCTCAGG,S513,TCGACTAG,ATCTCAGG-TCGACTAG -109,98,SmartSeq2_Test4,2,V2a,B,1,2V2aB01s482,s482,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,D2,TRUE,0.894709067,2,B01,N701,TAAGGCGA,S515,TTCTAGCT,TAAGGCGA-TTCTAGCT -110,106,SmartSeq2_Test4,2,V2a,B,2,2V2aB02s490,s490,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,D4,TRUE,0.491752952,2,B02,N702,CGTACTAG,S515,TTCTAGCT,CGTACTAG-TTCTAGCT -111,114,SmartSeq2_Test4,2,V2a,B,3,2V2aB03d498,d498,d62027d9-1af9-40cc-8696-3f5666c7022f;c64f269c-ec72-46bb-b703-c1858dd34841,CD3_pos,Jurkat,2,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,D6,TRUE,0.761838086,2,B03,N703,AGGCAGAA,S515,TTCTAGCT,AGGCAGAA-TTCTAGCT -112,122,SmartSeq2_Test4,2,V2a,B,4,2V2aB04s506,s506,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,D8,TRUE,0.310855938,2,B04,N704,TCCTGAGC,S515,TTCTAGCT,TCCTGAGC-TTCTAGCT -113,130,SmartSeq2_Test4,2,V2a,B,5,2V2aB05s514,s514,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,D10,TRUE,0.385993408,2,B05,N705,GGACTCCT,S515,TTCTAGCT,GGACTCCT-TTCTAGCT -114,138,SmartSeq2_Test4,2,V2a,B,6,2V2aB06s522,s522,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,D12,TRUE,0.576869869,2,B06,N706,TAGGCATG,S515,TTCTAGCT,TAGGCATG-TTCTAGCT -115,146,SmartSeq2_Test4,2,V2a,B,7,2V2aB07s530,s530,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,D14,TRUE,0.63143352,2,B07,N707,CTCTCTAC,S515,TTCTAGCT,CTCTCTAC-TTCTAGCT -116,154,SmartSeq2_Test4,2,V2a,B,8,2V2aB08s538,s538,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,D16,TRUE,0.554663344,2,B08,N710,CGAGGCTG,S515,TTCTAGCT,CGAGGCTG-TTCTAGCT -117,162,SmartSeq2_Test4,2,V2a,B,9,2V2aB09s546,s546,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,D18,TRUE,0.591800043,2,B09,N711,AAGAGGCA,S515,TTCTAGCT,AAGAGGCA-TTCTAGCT -118,170,SmartSeq2_Test4,2,V2a,B,10,2V2aB10s554,s554,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,D20,TRUE,0.463882095,2,B10,N712,GTAGAGGA,S515,TTCTAGCT,GTAGAGGA-TTCTAGCT -119,178,SmartSeq2_Test4,2,V2a,B,11,2V2aB11s562,s562,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,D22,TRUE,0.4838065,2,B11,N714,GCTCATGA,S515,TTCTAGCT,GCTCATGA-TTCTAGCT -120,186,SmartSeq2_Test4,2,V2a,B,12,2V2aB12c570,c570,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos_and_neg,Jurkat _and_K562,20,TRUE,FALSE,TRUE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,D24,TRUE,3.08465467,2,B12,N715,ATCTCAGG,S515,TTCTAGCT,ATCTCAGG-TTCTAGCT -121,99,SmartSeq2_Test4,2,V2a,C,1,2V2aC01s483,s483,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,F2,TRUE,0.868056128,2,C01,N701,TAAGGCGA,S516,CCTAGAGT,TAAGGCGA-CCTAGAGT -122,107,SmartSeq2_Test4,2,V2a,C,2,2V2aC02s491,s491,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,F4,TRUE,0.509990654,2,C02,N702,CGTACTAG,S516,CCTAGAGT,CGTACTAG-CCTAGAGT -123,115,SmartSeq2_Test4,2,V2a,C,3,2V2aC03s499,s499,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,F6,TRUE,0.459239257,2,C03,N703,AGGCAGAA,S516,CCTAGAGT,AGGCAGAA-CCTAGAGT -124,123,SmartSeq2_Test4,2,V2a,C,4,2V2aC04s507,s507,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,F8,TRUE,0.393109752,2,C04,N704,TCCTGAGC,S516,CCTAGAGT,TCCTGAGC-CCTAGAGT -125,131,SmartSeq2_Test4,2,V2a,C,5,2V2aC05s515,s515,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,F10,TRUE,0.384865452,2,C05,N705,GGACTCCT,S516,CCTAGAGT,GGACTCCT-CCTAGAGT -126,139,SmartSeq2_Test4,2,V2a,C,6,2V2aC06s523,s523,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,F12,TRUE,0.532060488,2,C06,N706,TAGGCATG,S516,CCTAGAGT,TAGGCATG-CCTAGAGT -127,147,SmartSeq2_Test4,2,V2a,C,7,2V2aC07s531,s531,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,F14,TRUE,0.399069615,2,C07,N707,CTCTCTAC,S516,CCTAGAGT,CTCTCTAC-CCTAGAGT -128,155,SmartSeq2_Test4,2,V2a,C,8,2V2aC08s539,s539,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,F16,TRUE,0.652948572,2,C08,N710,CGAGGCTG,S516,CCTAGAGT,CGAGGCTG-CCTAGAGT -129,163,SmartSeq2_Test4,2,V2a,C,9,2V2aC09s547,s547,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,F18,TRUE,0.401321265,2,C09,N711,AAGAGGCA,S516,CCTAGAGT,AAGAGGCA-CCTAGAGT -130,171,SmartSeq2_Test4,2,V2a,C,10,2V2aC10s555,s555,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,F20,TRUE,0.211109473,2,C10,N712,GTAGAGGA,S516,CCTAGAGT,GTAGAGGA-CCTAGAGT -131,179,SmartSeq2_Test4,2,V2a,C,11,2V2aC11d563,d563,d62027d9-1af9-40cc-8696-3f5666c7022f;c64f269c-ec72-46bb-b703-c1858dd34841,CD3_pos_and_neg,Jurkat _and_K562,2,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,F22,TRUE,0.646229941,2,C11,N714,GCTCATGA,S516,CCTAGAGT,GCTCATGA-CCTAGAGT -132,187,SmartSeq2_Test4,2,V2a,C,12,2V2aC12c571,c571,d62027d9-1af9-40cc-8696-3f5666c7022f,na,na,0,TRUE,FALSE,TRUE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,F24,TRUE,0.048279463,2,C12,N715,ATCTCAGG,S516,CCTAGAGT,ATCTCAGG-CCTAGAGT -133,100,SmartSeq2_Test4,2,V2a,D,1,2V2aD01s484,s484,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,H2,TRUE,0.484052082,2,D01,N701,TAAGGCGA,S517,GCGTAAGA,TAAGGCGA-GCGTAAGA -134,108,SmartSeq2_Test4,2,V2a,D,2,2V2aD02s492,s492,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,H4,TRUE,0.634073355,2,D02,N702,CGTACTAG,S517,GCGTAAGA,CGTACTAG-GCGTAAGA -135,116,SmartSeq2_Test4,2,V2a,D,3,2V2aD03s500,s500,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,H6,TRUE,0.505303811,2,D03,N703,AGGCAGAA,S517,GCGTAAGA,AGGCAGAA-GCGTAAGA -136,124,SmartSeq2_Test4,2,V2a,D,4,2V2aD04d508,d508,d62027d9-1af9-40cc-8696-3f5666c7022f;c64f269c-ec72-46bb-b703-c1858dd34841,CD3_neg,K562,2,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,H8,TRUE,0.903837747,2,D04,N704,TCCTGAGC,S517,GCGTAAGA,TCCTGAGC-GCGTAAGA -137,132,SmartSeq2_Test4,2,V2a,D,5,2V2aD05s516,s516,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,H10,TRUE,0.506262305,2,D05,N705,GGACTCCT,S517,GCGTAAGA,GGACTCCT-GCGTAAGA -138,140,SmartSeq2_Test4,2,V2a,D,6,2V2aD06s524,s524,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,H12,TRUE,0.766912663,2,D06,N706,TAGGCATG,S517,GCGTAAGA,TAGGCATG-GCGTAAGA -139,148,SmartSeq2_Test4,2,V2a,D,7,2V2aD07s532,s532,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,H14,TRUE,0.478663745,2,D07,N707,CTCTCTAC,S517,GCGTAAGA,CTCTCTAC-GCGTAAGA -140,156,SmartSeq2_Test4,2,V2a,D,8,2V2aD08s540,s540,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,H16,TRUE,0.396638038,2,D08,N710,CGAGGCTG,S517,GCGTAAGA,CGAGGCTG-GCGTAAGA -141,164,SmartSeq2_Test4,2,V2a,D,9,2V2aD09s548,s548,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,H18,TRUE,0.683446466,2,D09,N711,AAGAGGCA,S517,GCGTAAGA,AAGAGGCA-GCGTAAGA -142,172,SmartSeq2_Test4,2,V2a,D,10,2V2aD10s556,s556,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,H20,TRUE,1.012613304,2,D10,N712,GTAGAGGA,S517,GCGTAAGA,GTAGAGGA-GCGTAAGA -143,180,SmartSeq2_Test4,2,V2a,D,11,2V2aD11s564,s564,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,H22,TRUE,0.331295194,2,D11,N714,GCTCATGA,S517,GCGTAAGA,GCTCATGA-GCGTAAGA -144,188,SmartSeq2_Test4,2,V2a,D,12,2V2aD12c572,c572,d62027d9-1af9-40cc-8696-3f5666c7022f,na,na,0,FALSE,FALSE,TRUE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,H24,TRUE,0,2,D12,N715,ATCTCAGG,S517,GCGTAAGA,ATCTCAGG-GCGTAAGA -145,101,SmartSeq2_Test4,2,V2a,E,1,2V2aE01s485,s485,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,J2,TRUE,0.406992965,2,E01,N701,TAAGGCGA,S518,CTATTAAG,TAAGGCGA-CTATTAAG -146,109,SmartSeq2_Test4,2,V2a,E,2,2V2aE02s493,s493,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,J4,TRUE,0.663113699,2,E02,N702,CGTACTAG,S518,CTATTAAG,CGTACTAG-CTATTAAG -147,117,SmartSeq2_Test4,2,V2a,E,3,2V2aE03s501,s501,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,J6,TRUE,0.434450252,2,E03,N703,AGGCAGAA,S518,CTATTAAG,AGGCAGAA-CTATTAAG -148,125,SmartSeq2_Test4,2,V2a,E,4,2V2aE04s509,s509,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,J8,TRUE,0.207652038,2,E04,N704,TCCTGAGC,S518,CTATTAAG,TCCTGAGC-CTATTAAG -149,133,SmartSeq2_Test4,2,V2a,E,5,2V2aE05s517,s517,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,J10,TRUE,0.238836865,2,E05,N705,GGACTCCT,S518,CTATTAAG,GGACTCCT-CTATTAAG -150,141,SmartSeq2_Test4,2,V2a,E,6,2V2aE06s525,s525,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,J12,TRUE,0.244952532,2,E06,N706,TAGGCATG,S518,CTATTAAG,TAGGCATG-CTATTAAG -151,149,SmartSeq2_Test4,2,V2a,E,7,2V2aE07s533,s533,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,J14,TRUE,0.53196771,2,E07,N707,CTCTCTAC,S518,CTATTAAG,CTCTCTAC-CTATTAAG -152,157,SmartSeq2_Test4,2,V2a,E,8,2V2aE08s541,s541,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,J16,TRUE,0.706072686,2,E08,N710,CGAGGCTG,S518,CTATTAAG,CGAGGCTG-CTATTAAG -153,165,SmartSeq2_Test4,2,V2a,E,9,2V2aE09s549,s549,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,J18,TRUE,0.526154421,2,E09,N711,AAGAGGCA,S518,CTATTAAG,AAGAGGCA-CTATTAAG -154,173,SmartSeq2_Test4,2,V2a,E,10,2V2aE10s557,s557,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,J20,TRUE,0.294425765,2,E10,N712,GTAGAGGA,S518,CTATTAAG,GTAGAGGA-CTATTAAG -155,181,SmartSeq2_Test4,2,V2a,E,11,2V2aE11s565,s565,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,J22,TRUE,0.439083561,2,E11,N714,GCTCATGA,S518,CTATTAAG,GCTCATGA-CTATTAAG -156,189,SmartSeq2_Test4,2,V2a,E,12,2V2aE12c573,c573,d62027d9-1af9-40cc-8696-3f5666c7022f,na,na,0,TRUE,TRUE,TRUE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,J24,TRUE,0.96648534,2,E12,N715,ATCTCAGG,S518,CTATTAAG,ATCTCAGG-CTATTAAG -157,102,SmartSeq2_Test4,2,V2a,F,1,2V2aF01s486,s486,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,L2,TRUE,0.370100362,2,F01,N701,TAAGGCGA,S520,AAGGCTAT,TAAGGCGA-AAGGCTAT -158,110,SmartSeq2_Test4,2,V2a,F,2,2V2aF02s494,s494,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,L4,TRUE,0.440770295,2,F02,N702,CGTACTAG,S520,AAGGCTAT,CGTACTAG-AAGGCTAT -159,118,SmartSeq2_Test4,2,V2a,F,3,2V2aF03s502,s502,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,L6,TRUE,0.376046274,2,F03,N703,AGGCAGAA,S520,AAGGCTAT,AGGCAGAA-AAGGCTAT -160,126,SmartSeq2_Test4,2,V2a,F,4,2V2aF04s510,s510,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,L8,TRUE,0.239022462,2,F04,N704,TCCTGAGC,S520,AAGGCTAT,TCCTGAGC-AAGGCTAT -161,134,SmartSeq2_Test4,2,V2a,F,5,2V2aF05s518,s518,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,L10,TRUE,0.89564059,2,F05,N705,GGACTCCT,S520,AAGGCTAT,GGACTCCT-AAGGCTAT -162,142,SmartSeq2_Test4,2,V2a,F,6,2V2aF06s526,s526,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,L12,TRUE,0.496122163,2,F06,N706,TAGGCATG,S520,AAGGCTAT,TAGGCATG-AAGGCTAT -163,150,SmartSeq2_Test4,2,V2a,F,7,2V2aF07s534,s534,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,L14,TRUE,1.064881983,2,F07,N707,CTCTCTAC,S520,AAGGCTAT,CTCTCTAC-AAGGCTAT -164,158,SmartSeq2_Test4,2,V2a,F,8,2V2aF08s542,s542,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,L16,TRUE,0.882698478,2,F08,N710,CGAGGCTG,S520,AAGGCTAT,CGAGGCTG-AAGGCTAT -165,166,SmartSeq2_Test4,2,V2a,F,9,2V2aF09d550,d550,d62027d9-1af9-40cc-8696-3f5666c7022f;c64f269c-ec72-46bb-b703-c1858dd34841,CD3_pos,Jurkat,2,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,L18,TRUE,0.847456924,2,F09,N711,AAGAGGCA,S520,AAGGCTAT,AAGAGGCA-AAGGCTAT -166,174,SmartSeq2_Test4,2,V2a,F,10,2V2aF10s558,s558,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,L20,TRUE,0.316617126,2,F10,N712,GTAGAGGA,S520,AAGGCTAT,GTAGAGGA-AAGGCTAT -167,182,SmartSeq2_Test4,2,V2a,F,11,2V2aF11s566,s566,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,L22,TRUE,0.354802139,2,F11,N714,GCTCATGA,S520,AAGGCTAT,GCTCATGA-AAGGCTAT -168,190,SmartSeq2_Test4,2,V2a,F,12,2V2aF12c574,c574,d62027d9-1af9-40cc-8696-3f5666c7022f,na,na,0,TRUE,FALSE,TRUE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,L24,TRUE,0.032086344,2,F12,N715,ATCTCAGG,S520,AAGGCTAT,ATCTCAGG-AAGGCTAT -169,103,SmartSeq2_Test4,2,V2a,G,1,2V2aG01d487,d487,d62027d9-1af9-40cc-8696-3f5666c7022f;c64f269c-ec72-46bb-b703-c1858dd34841,CD3_pos_and_neg,Jurkat _and_K562,2,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,N2,TRUE,0.537138782,2,G01,N701,TAAGGCGA,S521,GAGCCTTA,TAAGGCGA-GAGCCTTA -170,111,SmartSeq2_Test4,2,V2a,G,2,2V2aG02s495,s495,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,N4,TRUE,0.636397899,2,G02,N702,CGTACTAG,S521,GAGCCTTA,CGTACTAG-GAGCCTTA -171,119,SmartSeq2_Test4,2,V2a,G,3,2V2aG03s503,s503,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,N6,TRUE,0.321502651,2,G03,N703,AGGCAGAA,S521,GAGCCTTA,AGGCAGAA-GAGCCTTA -172,127,SmartSeq2_Test4,2,V2a,G,4,2V2aG04s511,s511,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,N8,TRUE,0.485734783,2,G04,N704,TCCTGAGC,S521,GAGCCTTA,TCCTGAGC-GAGCCTTA -173,135,SmartSeq2_Test4,2,V2a,G,5,2V2aG05s519,s519,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,N10,TRUE,0.237325561,2,G05,N705,GGACTCCT,S521,GAGCCTTA,GGACTCCT-GAGCCTTA -174,143,SmartSeq2_Test4,2,V2a,G,6,2V2aG06s527,s527,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,N12,TRUE,0.244084518,2,G06,N706,TAGGCATG,S521,GAGCCTTA,TAGGCATG-GAGCCTTA -175,151,SmartSeq2_Test4,2,V2a,G,7,2V2aG07s535,s535,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,N14,TRUE,0.579017384,2,G07,N707,CTCTCTAC,S521,GAGCCTTA,CTCTCTAC-GAGCCTTA -176,159,SmartSeq2_Test4,2,V2a,G,8,2V2aG08d543,d543,d62027d9-1af9-40cc-8696-3f5666c7022f;c64f269c-ec72-46bb-b703-c1858dd34841,CD3_neg,K562,2,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,N16,TRUE,0.680911069,2,G08,N710,CGAGGCTG,S521,GAGCCTTA,CGAGGCTG-GAGCCTTA -177,167,SmartSeq2_Test4,2,V2a,G,9,2V2aG09s551,s551,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,N18,TRUE,0.30294803,2,G09,N711,AAGAGGCA,S521,GAGCCTTA,AAGAGGCA-GAGCCTTA -178,175,SmartSeq2_Test4,2,V2a,G,10,2V2aG10s559,s559,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,N20,TRUE,0.700805231,2,G10,N712,GTAGAGGA,S521,GAGCCTTA,GTAGAGGA-GAGCCTTA -179,183,SmartSeq2_Test4,2,V2a,G,11,2V2aG11s567,s567,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,N22,TRUE,0.080347609,2,G11,N714,GCTCATGA,S521,GAGCCTTA,GCTCATGA-GAGCCTTA -180,191,SmartSeq2_Test4,2,V2a,G,12,2V2aG12c575,c575,d62027d9-1af9-40cc-8696-3f5666c7022f,na,na,0,TRUE,FALSE,TRUE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,N24,TRUE,0.344926365,2,G12,N715,ATCTCAGG,S521,GAGCCTTA,ATCTCAGG-GAGCCTTA -181,104,SmartSeq2_Test4,2,V2a,H,1,2V2aH01s488,s488,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,P2,TRUE,0.265819437,2,H01,N701,TAAGGCGA,S522,TTATGCGA,TAAGGCGA-TTATGCGA -182,112,SmartSeq2_Test4,2,V2a,H,2,2V2aH02s496,s496,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,P4,TRUE,0.49312749,2,H02,N702,CGTACTAG,S522,TTATGCGA,CGTACTAG-TTATGCGA -183,120,SmartSeq2_Test4,2,V2a,H,3,2V2aH03s504,s504,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,P6,TRUE,0.746081211,2,H03,N703,AGGCAGAA,S522,TTATGCGA,AGGCAGAA-TTATGCGA -184,128,SmartSeq2_Test4,2,V2a,H,4,2V2aH04s512,s512,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,P8,TRUE,0.447111302,2,H04,N704,TCCTGAGC,S522,TTATGCGA,TCCTGAGC-TTATGCGA -185,136,SmartSeq2_Test4,2,V2a,H,5,2V2aH05s520,s520,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,P10,TRUE,0.524615843,2,H05,N705,GGACTCCT,S522,TTATGCGA,GGACTCCT-TTATGCGA -186,144,SmartSeq2_Test4,2,V2a,H,6,2V2aH06s528,s528,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,P12,TRUE,0.86360012,2,H06,N706,TAGGCATG,S522,TTATGCGA,TAGGCATG-TTATGCGA -187,152,SmartSeq2_Test4,2,V2a,H,7,2V2aH07s536,s536,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,P14,TRUE,0.564253478,2,H07,N707,CTCTCTAC,S522,TTATGCGA,CTCTCTAC-TTATGCGA -188,160,SmartSeq2_Test4,2,V2a,H,8,2V2aH08s544,s544,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,P16,TRUE,0.703398242,2,H08,N710,CGAGGCTG,S522,TTATGCGA,CGAGGCTG-TTATGCGA -189,168,SmartSeq2_Test4,2,V2a,H,9,2V2aH09s552,s552,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,P18,TRUE,0.512661596,2,H09,N711,AAGAGGCA,S522,TTATGCGA,AAGAGGCA-TTATGCGA -190,176,SmartSeq2_Test4,2,V2a,H,10,2V2aH10s560,s560,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,P20,TRUE,0.825538665,2,H10,N712,GTAGAGGA,S522,TTATGCGA,GTAGAGGA-TTATGCGA -191,184,SmartSeq2_Test4,2,V2a,H,11,2V2aH11s568,s568,d62027d9-1af9-40cc-8696-3f5666c7022f,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,P22,TRUE,0.449663643,2,H11,N714,GCTCATGA,S522,TTATGCGA,GCTCATGA-TTATGCGA -192,192,SmartSeq2_Test4,2,V2a,H,12,2V2aH12c576,c576,d62027d9-1af9-40cc-8696-3f5666c7022f,na,na,0,FALSE,FALSE,TRUE,2019-06-19_04-05-40_SS2_test3_Plate1Q1_Plate2Q4_JL,P24,TRUE,0,2,H12,N715,ATCTCAGG,S522,TTATGCGA,ATCTCAGG-TTATGCGA -193,193,SmartSeq2_Test4,4,H2a,A,1,4H2aA01s577,s577,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,A1,TRUE,0.235039323,3,A01,N716,ACTCGCTA,S502,CTCTCTAT,ACTCGCTA-CTCTCTAT -194,201,SmartSeq2_Test4,4,H2a,A,2,4H2aA02s585,s585,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,A3,TRUE,0.341713998,3,A02,N718,GGAGCTAC,S502,CTCTCTAT,GGAGCTAC-CTCTCTAT -195,209,SmartSeq2_Test4,4,H2a,A,3,4H2aA03s593,s593,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,A5,TRUE,0.734154395,3,A03,N719,GCGTAGTA,S502,CTCTCTAT,GCGTAGTA-CTCTCTAT -196,217,SmartSeq2_Test4,4,H2a,A,4,4H2aA04s601,s601,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,A7,TRUE,0.346335083,3,A04,N720,CGGAGCCT,S502,CTCTCTAT,CGGAGCCT-CTCTCTAT -197,225,SmartSeq2_Test4,4,H2a,A,5,4H2aA05s609,s609,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,A9,TRUE,0.559604484,3,A05,N721,TACGCTGC,S502,CTCTCTAT,TACGCTGC-CTCTCTAT -198,233,SmartSeq2_Test4,4,H2a,A,6,4H2aA06s617,s617,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,A11,TRUE,0.893925153,3,A06,N722,ATGCGCAG,S502,CTCTCTAT,ATGCGCAG-CTCTCTAT -199,241,SmartSeq2_Test4,4,H2a,A,7,4H2aA07s625,s625,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,A13,TRUE,0.543450185,3,A07,N723,TAGCGCTC,S502,CTCTCTAT,TAGCGCTC-CTCTCTAT -200,249,SmartSeq2_Test4,4,H2a,A,8,4H2aA08s633,s633,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,A15,TRUE,0.55636622,3,A08,N724,ACTGAGCG,S502,CTCTCTAT,ACTGAGCG-CTCTCTAT -201,257,SmartSeq2_Test4,4,H2a,A,9,4H2aA09s641,s641,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,A17,TRUE,0.774904237,3,A09,N726,CCTAAGAC,S502,CTCTCTAT,CCTAAGAC-CTCTCTAT -202,265,SmartSeq2_Test4,4,H2a,A,10,4H2aA10s649,s649,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,A19,TRUE,0.428737458,3,A10,N727,CGATCAGT,S502,CTCTCTAT,CGATCAGT-CTCTCTAT -203,273,SmartSeq2_Test4,4,H2a,A,11,4H2aA11s657,s657,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,A21,TRUE,0.409235136,3,A11,N728,TGCAGCTA,S502,CTCTCTAT,TGCAGCTA-CTCTCTAT -204,281,SmartSeq2_Test4,4,H2a,A,12,4H2aA12c665,c665,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos_and_neg,Jurkat _and_K562,50,TRUE,FALSE,TRUE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,A23,TRUE,65.86495722,3,A12,N729,TCGACGTC,S502,CTCTCTAT,TCGACGTC-CTCTCTAT -205,194,SmartSeq2_Test4,4,H2a,B,1,4H2aB01s578,s578,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,C1,TRUE,too low,3,B01,N716,ACTCGCTA,S503,TATCCTCT,ACTCGCTA-TATCCTCT -206,202,SmartSeq2_Test4,4,H2a,B,2,4H2aB02s586,s586,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,C3,TRUE,0.481579968,3,B02,N718,GGAGCTAC,S503,TATCCTCT,GGAGCTAC-TATCCTCT -207,210,SmartSeq2_Test4,4,H2a,B,3,4H2aB03s594,s594,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,C5,TRUE,0.139225762,3,B03,N719,GCGTAGTA,S503,TATCCTCT,GCGTAGTA-TATCCTCT -208,218,SmartSeq2_Test4,4,H2a,B,4,4H2aB04s602,s602,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,C7,TRUE,0.229448835,3,B04,N720,CGGAGCCT,S503,TATCCTCT,CGGAGCCT-TATCCTCT -209,226,SmartSeq2_Test4,4,H2a,B,5,4H2aB05s610,s610,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,C9,TRUE,0.571190058,3,B05,N721,TACGCTGC,S503,TATCCTCT,TACGCTGC-TATCCTCT -210,234,SmartSeq2_Test4,4,H2a,B,6,4H2aB06s618,s618,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,C11,TRUE,0.447914824,3,B06,N722,ATGCGCAG,S503,TATCCTCT,ATGCGCAG-TATCCTCT -211,242,SmartSeq2_Test4,4,H2a,B,7,4H2aB07s626,s626,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,C13,TRUE,0.356555718,3,B07,N723,TAGCGCTC,S503,TATCCTCT,TAGCGCTC-TATCCTCT -212,250,SmartSeq2_Test4,4,H2a,B,8,4H2aB08s634,s634,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,C15,TRUE,0.443254864,3,B08,N724,ACTGAGCG,S503,TATCCTCT,ACTGAGCG-TATCCTCT -213,258,SmartSeq2_Test4,4,H2a,B,9,4H2aB09s642,s642,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,C17,TRUE,0.44281172,3,B09,N726,CCTAAGAC,S503,TATCCTCT,CCTAAGAC-TATCCTCT -214,266,SmartSeq2_Test4,4,H2a,B,10,4H2aB10s650,s650,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,C19,TRUE,0.2993377,3,B10,N727,CGATCAGT,S503,TATCCTCT,CGATCAGT-TATCCTCT -215,274,SmartSeq2_Test4,4,H2a,B,11,4H2aB11s658,s658,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,C21,TRUE,0.003891169,3,B11,N728,TGCAGCTA,S503,TATCCTCT,TGCAGCTA-TATCCTCT -216,282,SmartSeq2_Test4,4,H2a,B,12,4H2aB12c666,c666,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos_and_neg,Jurkat _and_K562,20,TRUE,FALSE,TRUE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,C23,TRUE,3.001378177,3,B12,N729,TCGACGTC,S503,TATCCTCT,TCGACGTC-TATCCTCT -217,195,SmartSeq2_Test4,4,H2a,C,1,4H2aC01s579,s579,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,E1,TRUE,0.296157973,3,C01,N716,ACTCGCTA,S505,GTAAGGAG,ACTCGCTA-GTAAGGAG -218,203,SmartSeq2_Test4,4,H2a,C,2,4H2aC02s587,s587,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,E3,TRUE,0.337711027,3,C02,N718,GGAGCTAC,S505,GTAAGGAG,GGAGCTAC-GTAAGGAG -219,211,SmartSeq2_Test4,4,H2a,C,3,4H2aC03s595,s595,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,E5,TRUE,0.447533238,3,C03,N719,GCGTAGTA,S505,GTAAGGAG,GCGTAGTA-GTAAGGAG -220,219,SmartSeq2_Test4,4,H2a,C,4,4H2aC04s603,s603,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,E7,TRUE,0.31163047,3,C04,N720,CGGAGCCT,S505,GTAAGGAG,CGGAGCCT-GTAAGGAG -221,227,SmartSeq2_Test4,4,H2a,C,5,4H2aC05s611,s611,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,E9,TRUE,0.223462014,3,C05,N721,TACGCTGC,S505,GTAAGGAG,TACGCTGC-GTAAGGAG -222,235,SmartSeq2_Test4,4,H2a,C,6,4H2aC06s619,s619,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,E11,TRUE,0.557133368,3,C06,N722,ATGCGCAG,S505,GTAAGGAG,ATGCGCAG-GTAAGGAG -223,243,SmartSeq2_Test4,4,H2a,C,7,4H2aC07s627,s627,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,E13,TRUE,0.591233181,3,C07,N723,TAGCGCTC,S505,GTAAGGAG,TAGCGCTC-GTAAGGAG -224,251,SmartSeq2_Test4,4,H2a,C,8,4H2aC08s635,s635,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,E15,TRUE,0.560999521,3,C08,N724,ACTGAGCG,S505,GTAAGGAG,ACTGAGCG-GTAAGGAG -225,259,SmartSeq2_Test4,4,H2a,C,9,4H2aC09s643,s643,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,E17,TRUE,0.854796235,3,C09,N726,CCTAAGAC,S505,GTAAGGAG,CCTAAGAC-GTAAGGAG -226,267,SmartSeq2_Test4,4,H2a,C,10,4H2aC10s651,s651,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,E19,TRUE,0.546589121,3,C10,N727,CGATCAGT,S505,GTAAGGAG,CGATCAGT-GTAAGGAG -227,275,SmartSeq2_Test4,4,H2a,C,11,4H2aC11s659,s659,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,E21,TRUE,0.831432279,3,C11,N728,TGCAGCTA,S505,GTAAGGAG,TGCAGCTA-GTAAGGAG -228,283,SmartSeq2_Test4,4,H2a,C,12,4H2aC12c667,c667,fdf6302a-74aa-4927-89f2-109888eb4335,na,na,0,TRUE,FALSE,TRUE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,E23,TRUE,0.070593415,3,C12,N729,TCGACGTC,S505,GTAAGGAG,TCGACGTC-GTAAGGAG -229,196,SmartSeq2_Test4,4,H2a,D,1,4H2aD01s580,s580,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,G1,TRUE,0.187208197,3,D01,N716,ACTCGCTA,S506,ACTGCATA,ACTCGCTA-ACTGCATA -230,204,SmartSeq2_Test4,4,H2a,D,2,4H2aD02s588,s588,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,G3,TRUE,0.220847635,3,D02,N718,GGAGCTAC,S506,ACTGCATA,GGAGCTAC-ACTGCATA -231,212,SmartSeq2_Test4,4,H2a,D,3,4H2aD03s596,s596,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,G5,TRUE,0.588288288,3,D03,N719,GCGTAGTA,S506,ACTGCATA,GCGTAGTA-ACTGCATA -232,220,SmartSeq2_Test4,4,H2a,D,4,4H2aD04s604,s604,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,G7,TRUE,0.309432695,3,D04,N720,CGGAGCCT,S506,ACTGCATA,CGGAGCCT-ACTGCATA -233,228,SmartSeq2_Test4,4,H2a,D,5,4H2aD05s612,s612,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,G9,TRUE,0.306131669,3,D05,N721,TACGCTGC,S506,ACTGCATA,TACGCTGC-ACTGCATA -234,236,SmartSeq2_Test4,4,H2a,D,6,4H2aD06s620,s620,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,G11,TRUE,0.352750734,3,D06,N722,ATGCGCAG,S506,ACTGCATA,ATGCGCAG-ACTGCATA -235,244,SmartSeq2_Test4,4,H2a,D,7,4H2aD07s628,s628,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,G13,TRUE,0.228253922,3,D07,N723,TAGCGCTC,S506,ACTGCATA,TAGCGCTC-ACTGCATA -236,252,SmartSeq2_Test4,4,H2a,D,8,4H2aD08s636,s636,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,G15,TRUE,0.486460088,3,D08,N724,ACTGAGCG,S506,ACTGCATA,ACTGAGCG-ACTGCATA -237,260,SmartSeq2_Test4,4,H2a,D,9,4H2aD09s644,s644,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,G17,TRUE,0.626606144,3,D09,N726,CCTAAGAC,S506,ACTGCATA,CCTAAGAC-ACTGCATA -238,268,SmartSeq2_Test4,4,H2a,D,10,4H2aD10s652,s652,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,G19,TRUE,0.399841753,3,D10,N727,CGATCAGT,S506,ACTGCATA,CGATCAGT-ACTGCATA -239,276,SmartSeq2_Test4,4,H2a,D,11,4H2aD11s660,s660,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,G21,TRUE,0.619367348,3,D11,N728,TGCAGCTA,S506,ACTGCATA,TGCAGCTA-ACTGCATA -240,284,SmartSeq2_Test4,4,H2a,D,12,4H2aD12c668,c668,fdf6302a-74aa-4927-89f2-109888eb4335,na,na,0,FALSE,FALSE,TRUE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,G23,TRUE,0.00062082,3,D12,N729,TCGACGTC,S506,ACTGCATA,TCGACGTC-ACTGCATA -241,197,SmartSeq2_Test4,4,H2a,E,1,4H2aE01s581,s581,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,I1,TRUE,0.496168303,3,E01,N716,ACTCGCTA,S507,AAGGAGTA,ACTCGCTA-AAGGAGTA -242,205,SmartSeq2_Test4,4,H2a,E,2,4H2aE02s589,s589,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,I3,TRUE,0.51240652,3,E02,N718,GGAGCTAC,S507,AAGGAGTA,GGAGCTAC-AAGGAGTA -243,213,SmartSeq2_Test4,4,H2a,E,3,4H2aE03s597,s597,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,I5,TRUE,0.421796519,3,E03,N719,GCGTAGTA,S507,AAGGAGTA,GCGTAGTA-AAGGAGTA -244,221,SmartSeq2_Test4,4,H2a,E,4,4H2aE04s605,s605,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,I7,TRUE,0.441850775,3,E04,N720,CGGAGCCT,S507,AAGGAGTA,CGGAGCCT-AAGGAGTA -245,229,SmartSeq2_Test4,4,H2a,E,5,4H2aE05s613,s613,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,I9,TRUE,0.554370363,3,E05,N721,TACGCTGC,S507,AAGGAGTA,TACGCTGC-AAGGAGTA -246,237,SmartSeq2_Test4,4,H2a,E,6,4H2aE06s621,s621,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,I11,TRUE,0.742057148,3,E06,N722,ATGCGCAG,S507,AAGGAGTA,ATGCGCAG-AAGGAGTA -247,245,SmartSeq2_Test4,4,H2a,E,7,4H2aE07s629,s629,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,I13,TRUE,0.824532213,3,E07,N723,TAGCGCTC,S507,AAGGAGTA,TAGCGCTC-AAGGAGTA -248,253,SmartSeq2_Test4,4,H2a,E,8,4H2aE08s637,s637,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,I15,TRUE,0.795703372,3,E08,N724,ACTGAGCG,S507,AAGGAGTA,ACTGAGCG-AAGGAGTA -249,261,SmartSeq2_Test4,4,H2a,E,9,4H2aE09s645,s645,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,I17,TRUE,1.126076583,3,E09,N726,CCTAAGAC,S507,AAGGAGTA,CCTAAGAC-AAGGAGTA -250,269,SmartSeq2_Test4,4,H2a,E,10,4H2aE10s653,s653,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,I19,TRUE,0.357420517,3,E10,N727,CGATCAGT,S507,AAGGAGTA,CGATCAGT-AAGGAGTA -251,277,SmartSeq2_Test4,4,H2a,E,11,4H2aE11s661,s661,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,I21,TRUE,0.727981347,3,E11,N728,TGCAGCTA,S507,AAGGAGTA,TGCAGCTA-AAGGAGTA -252,285,SmartSeq2_Test4,4,H2a,E,12,4H2aE12c669,c669,fdf6302a-74aa-4927-89f2-109888eb4335,na,na,0,TRUE,TRUE,TRUE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,I23,TRUE,1.110459694,3,E12,N729,TCGACGTC,S507,AAGGAGTA,TCGACGTC-AAGGAGTA -253,198,SmartSeq2_Test4,4,H2a,F,1,4H2aF01s582,s582,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,K1,TRUE,0.145058535,3,F01,N716,ACTCGCTA,S508,CTAAGCCT,ACTCGCTA-CTAAGCCT -254,206,SmartSeq2_Test4,4,H2a,F,2,4H2aF02s590,s590,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,K3,TRUE,0.374503508,3,F02,N718,GGAGCTAC,S508,CTAAGCCT,GGAGCTAC-CTAAGCCT -255,214,SmartSeq2_Test4,4,H2a,F,3,4H2aF03s598,s598,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,K5,TRUE,too low,3,F03,N719,GCGTAGTA,S508,CTAAGCCT,GCGTAGTA-CTAAGCCT -256,222,SmartSeq2_Test4,4,H2a,F,4,4H2aF04s606,s606,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,K7,TRUE,0.172837801,3,F04,N720,CGGAGCCT,S508,CTAAGCCT,CGGAGCCT-CTAAGCCT -257,230,SmartSeq2_Test4,4,H2a,F,5,4H2aF05s614,s614,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,K9,TRUE,0.333965396,3,F05,N721,TACGCTGC,S508,CTAAGCCT,TACGCTGC-CTAAGCCT -258,238,SmartSeq2_Test4,4,H2a,F,6,4H2aF06s622,s622,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,K11,TRUE,0.478033372,3,F06,N722,ATGCGCAG,S508,CTAAGCCT,ATGCGCAG-CTAAGCCT -259,246,SmartSeq2_Test4,4,H2a,F,7,4H2aF07s630,s630,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,K13,TRUE,0.56062783,3,F07,N723,TAGCGCTC,S508,CTAAGCCT,TAGCGCTC-CTAAGCCT -260,254,SmartSeq2_Test4,4,H2a,F,8,4H2aF08s638,s638,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,K15,TRUE,0.662869602,3,F08,N724,ACTGAGCG,S508,CTAAGCCT,ACTGAGCG-CTAAGCCT -261,262,SmartSeq2_Test4,4,H2a,F,9,4H2aF09s646,s646,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,K17,TRUE,0.320172967,3,F09,N726,CCTAAGAC,S508,CTAAGCCT,CCTAAGAC-CTAAGCCT -262,270,SmartSeq2_Test4,4,H2a,F,10,4H2aF10s654,s654,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,K19,TRUE,0.330874463,3,F10,N727,CGATCAGT,S508,CTAAGCCT,CGATCAGT-CTAAGCCT -263,278,SmartSeq2_Test4,4,H2a,F,11,4H2aF11s662,s662,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,K21,TRUE,0.41191661,3,F11,N728,TGCAGCTA,S508,CTAAGCCT,TGCAGCTA-CTAAGCCT -264,286,SmartSeq2_Test4,4,H2a,F,12,4H2aF12c670,c670,fdf6302a-74aa-4927-89f2-109888eb4335,na,na,0,TRUE,FALSE,TRUE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,K23,TRUE,0.023458211,3,F12,N729,TCGACGTC,S508,CTAAGCCT,TCGACGTC-CTAAGCCT -265,199,SmartSeq2_Test4,4,H2a,G,1,4H2aG01s583,s583,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,M1,TRUE,0.288272812,3,G01,N716,ACTCGCTA,S510,CGTCTAAT,ACTCGCTA-CGTCTAAT -266,207,SmartSeq2_Test4,4,H2a,G,2,4H2aG02s591,s591,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,M3,TRUE,0.419063164,3,G02,N718,GGAGCTAC,S510,CGTCTAAT,GGAGCTAC-CGTCTAAT -267,215,SmartSeq2_Test4,4,H2a,G,3,4H2aG03s599,s599,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,M5,TRUE,0.869843142,3,G03,N719,GCGTAGTA,S510,CGTCTAAT,GCGTAGTA-CGTCTAAT -268,223,SmartSeq2_Test4,4,H2a,G,4,4H2aG04s607,s607,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,M7,TRUE,0.428727727,3,G04,N720,CGGAGCCT,S510,CGTCTAAT,CGGAGCCT-CGTCTAAT -269,231,SmartSeq2_Test4,4,H2a,G,5,4H2aG05s615,s615,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,M9,TRUE,0.606751727,3,G05,N721,TACGCTGC,S510,CGTCTAAT,TACGCTGC-CGTCTAAT -270,239,SmartSeq2_Test4,4,H2a,G,6,4H2aG06s623,s623,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,M11,TRUE,0.571488861,3,G06,N722,ATGCGCAG,S510,CGTCTAAT,ATGCGCAG-CGTCTAAT -271,247,SmartSeq2_Test4,4,H2a,G,7,4H2aG07s631,s631,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,M13,TRUE,0.707529108,3,G07,N723,TAGCGCTC,S510,CGTCTAAT,TAGCGCTC-CGTCTAAT -272,255,SmartSeq2_Test4,4,H2a,G,8,4H2aG08s639,s639,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,M15,TRUE,1.154355709,3,G08,N724,ACTGAGCG,S510,CGTCTAAT,ACTGAGCG-CGTCTAAT -273,263,SmartSeq2_Test4,4,H2a,G,9,4H2aG09s647,s647,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,M17,TRUE,0.501169773,3,G09,N726,CCTAAGAC,S510,CGTCTAAT,CCTAAGAC-CGTCTAAT -274,271,SmartSeq2_Test4,4,H2a,G,10,4H2aG10s655,s655,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,M19,TRUE,0.563063703,3,G10,N727,CGATCAGT,S510,CGTCTAAT,CGATCAGT-CGTCTAAT -275,279,SmartSeq2_Test4,4,H2a,G,11,4H2aG11s663,s663,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,M21,TRUE,0.505210947,3,G11,N728,TGCAGCTA,S510,CGTCTAAT,TGCAGCTA-CGTCTAAT -276,287,SmartSeq2_Test4,4,H2a,G,12,4H2aG12c671,c671,fdf6302a-74aa-4927-89f2-109888eb4335,na,na,0,TRUE,FALSE,TRUE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,M23,TRUE,0.397535648,3,G12,N729,TCGACGTC,S510,CGTCTAAT,TCGACGTC-CGTCTAAT -277,200,SmartSeq2_Test4,4,H2a,H,1,4H2aH01s584,s584,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,O1,TRUE,0.136147788,3,H01,N716,ACTCGCTA,S511,TCTCTCCG,ACTCGCTA-TCTCTCCG -278,208,SmartSeq2_Test4,4,H2a,H,2,4H2aH02s592,s592,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,O3,TRUE,too low,3,H02,N718,GGAGCTAC,S511,TCTCTCCG,GGAGCTAC-TCTCTCCG -279,216,SmartSeq2_Test4,4,H2a,H,3,4H2aH03s600,s600,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,O5,TRUE,0.397325394,3,H03,N719,GCGTAGTA,S511,TCTCTCCG,GCGTAGTA-TCTCTCCG -280,224,SmartSeq2_Test4,4,H2a,H,4,4H2aH04s608,s608,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,O7,TRUE,0.240586731,3,H04,N720,CGGAGCCT,S511,TCTCTCCG,CGGAGCCT-TCTCTCCG -281,232,SmartSeq2_Test4,4,H2a,H,5,4H2aH05s616,s616,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,O9,TRUE,0.443053477,3,H05,N721,TACGCTGC,S511,TCTCTCCG,TACGCTGC-TCTCTCCG -282,240,SmartSeq2_Test4,4,H2a,H,6,4H2aH06s624,s624,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,O11,TRUE,0.266441499,3,H06,N722,ATGCGCAG,S511,TCTCTCCG,ATGCGCAG-TCTCTCCG -283,248,SmartSeq2_Test4,4,H2a,H,7,4H2aH07s632,s632,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,O13,TRUE,0.311399182,3,H07,N723,TAGCGCTC,S511,TCTCTCCG,TAGCGCTC-TCTCTCCG -284,256,SmartSeq2_Test4,4,H2a,H,8,4H2aH08s640,s640,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,O15,TRUE,0.806034086,3,H08,N724,ACTGAGCG,S511,TCTCTCCG,ACTGAGCG-TCTCTCCG -285,264,SmartSeq2_Test4,4,H2a,H,9,4H2aH09s648,s648,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,O17,TRUE,0.560953547,3,H09,N726,CCTAAGAC,S511,TCTCTCCG,CCTAAGAC-TCTCTCCG -286,272,SmartSeq2_Test4,4,H2a,H,10,4H2aH10s656,s656,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,O19,TRUE,0.618945229,3,H10,N727,CGATCAGT,S511,TCTCTCCG,CGATCAGT-TCTCTCCG -287,280,SmartSeq2_Test4,4,H2a,H,11,4H2aH11s664,s664,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,O21,TRUE,0.655133515,3,H11,N728,TGCAGCTA,S511,TCTCTCCG,TGCAGCTA-TCTCTCCG -288,288,SmartSeq2_Test4,4,H2a,H,12,4H2aH12c672,c672,fdf6302a-74aa-4927-89f2-109888eb4335,na,na,0,FALSE,FALSE,TRUE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,O23,TRUE,0.002399743,3,H12,N729,TCGACGTC,S511,TCTCTCCG,TCGACGTC-TCTCTCCG -289,289,SmartSeq2_Test4,4,H2b,A,1,4H2bA01s673,s673,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,A1,TRUE,0.235039323,4,A01,N716,ACTCGCTA,S513,TCGACTAG,ACTCGCTA-TCGACTAG -290,297,SmartSeq2_Test4,4,H2b,A,2,4H2bA02s681,s681,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,A3,TRUE,0.341713998,4,A02,N718,GGAGCTAC,S513,TCGACTAG,GGAGCTAC-TCGACTAG -291,305,SmartSeq2_Test4,4,H2b,A,3,4H2bA03s689,s689,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,A5,TRUE,0.734154395,4,A03,N719,GCGTAGTA,S513,TCGACTAG,GCGTAGTA-TCGACTAG -292,313,SmartSeq2_Test4,4,H2b,A,4,4H2bA04s697,s697,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,A7,TRUE,0.346335083,4,A04,N720,CGGAGCCT,S513,TCGACTAG,CGGAGCCT-TCGACTAG -293,321,SmartSeq2_Test4,4,H2b,A,5,4H2bA05s705,s705,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,A9,TRUE,0.559604484,4,A05,N721,TACGCTGC,S513,TCGACTAG,TACGCTGC-TCGACTAG -294,329,SmartSeq2_Test4,4,H2b,A,6,4H2bA06s713,s713,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,A11,TRUE,0.893925153,4,A06,N722,ATGCGCAG,S513,TCGACTAG,ATGCGCAG-TCGACTAG -295,337,SmartSeq2_Test4,4,H2b,A,7,4H2bA07s721,s721,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,A13,TRUE,0.543450185,4,A07,N723,TAGCGCTC,S513,TCGACTAG,TAGCGCTC-TCGACTAG -296,345,SmartSeq2_Test4,4,H2b,A,8,4H2bA08s729,s729,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,A15,TRUE,0.55636622,4,A08,N724,ACTGAGCG,S513,TCGACTAG,ACTGAGCG-TCGACTAG -297,353,SmartSeq2_Test4,4,H2b,A,9,4H2bA09s737,s737,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,A17,TRUE,0.774904237,4,A09,N726,CCTAAGAC,S513,TCGACTAG,CCTAAGAC-TCGACTAG -298,361,SmartSeq2_Test4,4,H2b,A,10,4H2bA10s745,s745,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,A19,TRUE,0.428737458,4,A10,N727,CGATCAGT,S513,TCGACTAG,CGATCAGT-TCGACTAG -299,369,SmartSeq2_Test4,4,H2b,A,11,4H2bA11s753,s753,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,A21,TRUE,0.409235136,4,A11,N728,TGCAGCTA,S513,TCGACTAG,TGCAGCTA-TCGACTAG -300,377,SmartSeq2_Test4,4,H2b,A,12,4H2bA12c761,c761,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos_and_neg,Jurkat _and_K562,50,TRUE,FALSE,TRUE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,A23,TRUE,65.86495722,4,A12,N729,TCGACGTC,S513,TCGACTAG,TCGACGTC-TCGACTAG -301,290,SmartSeq2_Test4,4,H2b,B,1,4H2bB01s674,s674,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,C1,TRUE,too low,4,B01,N716,ACTCGCTA,S515,TTCTAGCT,ACTCGCTA-TTCTAGCT -302,298,SmartSeq2_Test4,4,H2b,B,2,4H2bB02s682,s682,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,C3,TRUE,0.481579968,4,B02,N718,GGAGCTAC,S515,TTCTAGCT,GGAGCTAC-TTCTAGCT -303,306,SmartSeq2_Test4,4,H2b,B,3,4H2bB03s690,s690,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,C5,TRUE,0.139225762,4,B03,N719,GCGTAGTA,S515,TTCTAGCT,GCGTAGTA-TTCTAGCT -304,314,SmartSeq2_Test4,4,H2b,B,4,4H2bB04s698,s698,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,C7,TRUE,0.229448835,4,B04,N720,CGGAGCCT,S515,TTCTAGCT,CGGAGCCT-TTCTAGCT -305,322,SmartSeq2_Test4,4,H2b,B,5,4H2bB05s706,s706,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,C9,TRUE,0.571190058,4,B05,N721,TACGCTGC,S515,TTCTAGCT,TACGCTGC-TTCTAGCT -306,330,SmartSeq2_Test4,4,H2b,B,6,4H2bB06s714,s714,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,C11,TRUE,0.447914824,4,B06,N722,ATGCGCAG,S515,TTCTAGCT,ATGCGCAG-TTCTAGCT -307,338,SmartSeq2_Test4,4,H2b,B,7,4H2bB07s722,s722,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,C13,TRUE,0.356555718,4,B07,N723,TAGCGCTC,S515,TTCTAGCT,TAGCGCTC-TTCTAGCT -308,346,SmartSeq2_Test4,4,H2b,B,8,4H2bB08s730,s730,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,C15,TRUE,0.443254864,4,B08,N724,ACTGAGCG,S515,TTCTAGCT,ACTGAGCG-TTCTAGCT -309,354,SmartSeq2_Test4,4,H2b,B,9,4H2bB09s738,s738,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,C17,TRUE,0.44281172,4,B09,N726,CCTAAGAC,S515,TTCTAGCT,CCTAAGAC-TTCTAGCT -310,362,SmartSeq2_Test4,4,H2b,B,10,4H2bB10s746,s746,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,C19,TRUE,0.2993377,4,B10,N727,CGATCAGT,S515,TTCTAGCT,CGATCAGT-TTCTAGCT -311,370,SmartSeq2_Test4,4,H2b,B,11,4H2bB11s754,s754,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,C21,TRUE,0.003891169,4,B11,N728,TGCAGCTA,S515,TTCTAGCT,TGCAGCTA-TTCTAGCT -312,378,SmartSeq2_Test4,4,H2b,B,12,4H2bB12c762,c762,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos_and_neg,Jurkat _and_K562,20,TRUE,FALSE,TRUE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,C23,TRUE,3.001378177,4,B12,N729,TCGACGTC,S515,TTCTAGCT,TCGACGTC-TTCTAGCT -313,291,SmartSeq2_Test4,4,H2b,C,1,4H2bC01s675,s675,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,E1,TRUE,0.296157973,4,C01,N716,ACTCGCTA,S516,CCTAGAGT,ACTCGCTA-CCTAGAGT -314,299,SmartSeq2_Test4,4,H2b,C,2,4H2bC02s683,s683,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,E3,TRUE,0.337711027,4,C02,N718,GGAGCTAC,S516,CCTAGAGT,GGAGCTAC-CCTAGAGT -315,307,SmartSeq2_Test4,4,H2b,C,3,4H2bC03s691,s691,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,E5,TRUE,0.447533238,4,C03,N719,GCGTAGTA,S516,CCTAGAGT,GCGTAGTA-CCTAGAGT -316,315,SmartSeq2_Test4,4,H2b,C,4,4H2bC04s699,s699,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,E7,TRUE,0.31163047,4,C04,N720,CGGAGCCT,S516,CCTAGAGT,CGGAGCCT-CCTAGAGT -317,323,SmartSeq2_Test4,4,H2b,C,5,4H2bC05s707,s707,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,E9,TRUE,0.223462014,4,C05,N721,TACGCTGC,S516,CCTAGAGT,TACGCTGC-CCTAGAGT -318,331,SmartSeq2_Test4,4,H2b,C,6,4H2bC06s715,s715,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,E11,TRUE,0.557133368,4,C06,N722,ATGCGCAG,S516,CCTAGAGT,ATGCGCAG-CCTAGAGT -319,339,SmartSeq2_Test4,4,H2b,C,7,4H2bC07s723,s723,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,E13,TRUE,0.591233181,4,C07,N723,TAGCGCTC,S516,CCTAGAGT,TAGCGCTC-CCTAGAGT -320,347,SmartSeq2_Test4,4,H2b,C,8,4H2bC08s731,s731,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,E15,TRUE,0.560999521,4,C08,N724,ACTGAGCG,S516,CCTAGAGT,ACTGAGCG-CCTAGAGT -321,355,SmartSeq2_Test4,4,H2b,C,9,4H2bC09s739,s739,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,E17,TRUE,0.854796235,4,C09,N726,CCTAAGAC,S516,CCTAGAGT,CCTAAGAC-CCTAGAGT -322,363,SmartSeq2_Test4,4,H2b,C,10,4H2bC10s747,s747,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,E19,TRUE,0.546589121,4,C10,N727,CGATCAGT,S516,CCTAGAGT,CGATCAGT-CCTAGAGT -323,371,SmartSeq2_Test4,4,H2b,C,11,4H2bC11s755,s755,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,E21,TRUE,0.831432279,4,C11,N728,TGCAGCTA,S516,CCTAGAGT,TGCAGCTA-CCTAGAGT -324,379,SmartSeq2_Test4,4,H2b,C,12,4H2bC12c763,c763,fdf6302a-74aa-4927-89f2-109888eb4335,na,na,0,TRUE,FALSE,TRUE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,E23,TRUE,0.070593415,4,C12,N729,TCGACGTC,S516,CCTAGAGT,TCGACGTC-CCTAGAGT -325,292,SmartSeq2_Test4,4,H2b,D,1,4H2bD01s676,s676,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,G1,TRUE,0.187208197,4,D01,N716,ACTCGCTA,S517,GCGTAAGA,ACTCGCTA-GCGTAAGA -326,300,SmartSeq2_Test4,4,H2b,D,2,4H2bD02s684,s684,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,G3,TRUE,0.220847635,4,D02,N718,GGAGCTAC,S517,GCGTAAGA,GGAGCTAC-GCGTAAGA -327,308,SmartSeq2_Test4,4,H2b,D,3,4H2bD03s692,s692,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,G5,TRUE,0.588288288,4,D03,N719,GCGTAGTA,S517,GCGTAAGA,GCGTAGTA-GCGTAAGA -328,316,SmartSeq2_Test4,4,H2b,D,4,4H2bD04s700,s700,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,G7,TRUE,0.309432695,4,D04,N720,CGGAGCCT,S517,GCGTAAGA,CGGAGCCT-GCGTAAGA -329,324,SmartSeq2_Test4,4,H2b,D,5,4H2bD05s708,s708,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,G9,TRUE,0.306131669,4,D05,N721,TACGCTGC,S517,GCGTAAGA,TACGCTGC-GCGTAAGA -330,332,SmartSeq2_Test4,4,H2b,D,6,4H2bD06s716,s716,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,G11,TRUE,0.352750734,4,D06,N722,ATGCGCAG,S517,GCGTAAGA,ATGCGCAG-GCGTAAGA -331,340,SmartSeq2_Test4,4,H2b,D,7,4H2bD07s724,s724,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,G13,TRUE,0.228253922,4,D07,N723,TAGCGCTC,S517,GCGTAAGA,TAGCGCTC-GCGTAAGA -332,348,SmartSeq2_Test4,4,H2b,D,8,4H2bD08s732,s732,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,G15,TRUE,0.486460088,4,D08,N724,ACTGAGCG,S517,GCGTAAGA,ACTGAGCG-GCGTAAGA -333,356,SmartSeq2_Test4,4,H2b,D,9,4H2bD09s740,s740,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,G17,TRUE,0.626606144,4,D09,N726,CCTAAGAC,S517,GCGTAAGA,CCTAAGAC-GCGTAAGA -334,364,SmartSeq2_Test4,4,H2b,D,10,4H2bD10s748,s748,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,G19,TRUE,0.399841753,4,D10,N727,CGATCAGT,S517,GCGTAAGA,CGATCAGT-GCGTAAGA -335,372,SmartSeq2_Test4,4,H2b,D,11,4H2bD11s756,s756,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,G21,TRUE,0.619367348,4,D11,N728,TGCAGCTA,S517,GCGTAAGA,TGCAGCTA-GCGTAAGA -336,380,SmartSeq2_Test4,4,H2b,D,12,4H2bD12c764,c764,fdf6302a-74aa-4927-89f2-109888eb4335,na,na,0,FALSE,FALSE,TRUE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,G23,TRUE,0.00062082,4,D12,N729,TCGACGTC,S517,GCGTAAGA,TCGACGTC-GCGTAAGA -337,293,SmartSeq2_Test4,4,H2b,E,1,4H2bE01s677,s677,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,I1,TRUE,0.496168303,4,E01,N716,ACTCGCTA,S518,CTATTAAG,ACTCGCTA-CTATTAAG -338,301,SmartSeq2_Test4,4,H2b,E,2,4H2bE02s685,s685,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,I3,TRUE,0.51240652,4,E02,N718,GGAGCTAC,S518,CTATTAAG,GGAGCTAC-CTATTAAG -339,309,SmartSeq2_Test4,4,H2b,E,3,4H2bE03s693,s693,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,I5,TRUE,0.421796519,4,E03,N719,GCGTAGTA,S518,CTATTAAG,GCGTAGTA-CTATTAAG -340,317,SmartSeq2_Test4,4,H2b,E,4,4H2bE04s701,s701,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,I7,TRUE,0.441850775,4,E04,N720,CGGAGCCT,S518,CTATTAAG,CGGAGCCT-CTATTAAG -341,325,SmartSeq2_Test4,4,H2b,E,5,4H2bE05s709,s709,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,I9,TRUE,0.554370363,4,E05,N721,TACGCTGC,S518,CTATTAAG,TACGCTGC-CTATTAAG -342,333,SmartSeq2_Test4,4,H2b,E,6,4H2bE06s717,s717,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,I11,TRUE,0.742057148,4,E06,N722,ATGCGCAG,S518,CTATTAAG,ATGCGCAG-CTATTAAG -343,341,SmartSeq2_Test4,4,H2b,E,7,4H2bE07s725,s725,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,I13,TRUE,0.824532213,4,E07,N723,TAGCGCTC,S518,CTATTAAG,TAGCGCTC-CTATTAAG -344,349,SmartSeq2_Test4,4,H2b,E,8,4H2bE08s733,s733,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,I15,TRUE,0.795703372,4,E08,N724,ACTGAGCG,S518,CTATTAAG,ACTGAGCG-CTATTAAG -345,357,SmartSeq2_Test4,4,H2b,E,9,4H2bE09s741,s741,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,I17,TRUE,1.126076583,4,E09,N726,CCTAAGAC,S518,CTATTAAG,CCTAAGAC-CTATTAAG -346,365,SmartSeq2_Test4,4,H2b,E,10,4H2bE10s749,s749,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,I19,TRUE,0.357420517,4,E10,N727,CGATCAGT,S518,CTATTAAG,CGATCAGT-CTATTAAG -347,373,SmartSeq2_Test4,4,H2b,E,11,4H2bE11s757,s757,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,I21,TRUE,0.727981347,4,E11,N728,TGCAGCTA,S518,CTATTAAG,TGCAGCTA-CTATTAAG -348,381,SmartSeq2_Test4,4,H2b,E,12,4H2bE12c765,c765,fdf6302a-74aa-4927-89f2-109888eb4335,na,na,0,TRUE,TRUE,TRUE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,I23,TRUE,1.110459694,4,E12,N729,TCGACGTC,S518,CTATTAAG,TCGACGTC-CTATTAAG -349,294,SmartSeq2_Test4,4,H2b,F,1,4H2bF01s678,s678,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,K1,TRUE,0.145058535,4,F01,N716,ACTCGCTA,S520,AAGGCTAT,ACTCGCTA-AAGGCTAT -350,302,SmartSeq2_Test4,4,H2b,F,2,4H2bF02s686,s686,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,K3,TRUE,0.374503508,4,F02,N718,GGAGCTAC,S520,AAGGCTAT,GGAGCTAC-AAGGCTAT -351,310,SmartSeq2_Test4,4,H2b,F,3,4H2bF03s694,s694,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,K5,TRUE,too low,4,F03,N719,GCGTAGTA,S520,AAGGCTAT,GCGTAGTA-AAGGCTAT -352,318,SmartSeq2_Test4,4,H2b,F,4,4H2bF04s702,s702,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,K7,TRUE,0.172837801,4,F04,N720,CGGAGCCT,S520,AAGGCTAT,CGGAGCCT-AAGGCTAT -353,326,SmartSeq2_Test4,4,H2b,F,5,4H2bF05s710,s710,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,K9,TRUE,0.333965396,4,F05,N721,TACGCTGC,S520,AAGGCTAT,TACGCTGC-AAGGCTAT -354,334,SmartSeq2_Test4,4,H2b,F,6,4H2bF06s718,s718,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,K11,TRUE,0.478033372,4,F06,N722,ATGCGCAG,S520,AAGGCTAT,ATGCGCAG-AAGGCTAT -355,342,SmartSeq2_Test4,4,H2b,F,7,4H2bF07s726,s726,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,K13,TRUE,0.56062783,4,F07,N723,TAGCGCTC,S520,AAGGCTAT,TAGCGCTC-AAGGCTAT -356,350,SmartSeq2_Test4,4,H2b,F,8,4H2bF08s734,s734,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,K15,TRUE,0.662869602,4,F08,N724,ACTGAGCG,S520,AAGGCTAT,ACTGAGCG-AAGGCTAT -357,358,SmartSeq2_Test4,4,H2b,F,9,4H2bF09s742,s742,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,K17,TRUE,0.320172967,4,F09,N726,CCTAAGAC,S520,AAGGCTAT,CCTAAGAC-AAGGCTAT -358,366,SmartSeq2_Test4,4,H2b,F,10,4H2bF10s750,s750,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,K19,TRUE,0.330874463,4,F10,N727,CGATCAGT,S520,AAGGCTAT,CGATCAGT-AAGGCTAT -359,374,SmartSeq2_Test4,4,H2b,F,11,4H2bF11s758,s758,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,K21,TRUE,0.41191661,4,F11,N728,TGCAGCTA,S520,AAGGCTAT,TGCAGCTA-AAGGCTAT -360,382,SmartSeq2_Test4,4,H2b,F,12,4H2bF12c766,c766,fdf6302a-74aa-4927-89f2-109888eb4335,na,na,0,TRUE,FALSE,TRUE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,K23,TRUE,0.023458211,4,F12,N729,TCGACGTC,S520,AAGGCTAT,TCGACGTC-AAGGCTAT -361,295,SmartSeq2_Test4,4,H2b,G,1,4H2bG01s679,s679,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,M1,TRUE,0.288272812,4,G01,N716,ACTCGCTA,S521,GAGCCTTA,ACTCGCTA-GAGCCTTA -362,303,SmartSeq2_Test4,4,H2b,G,2,4H2bG02s687,s687,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,M3,TRUE,0.419063164,4,G02,N718,GGAGCTAC,S521,GAGCCTTA,GGAGCTAC-GAGCCTTA -363,311,SmartSeq2_Test4,4,H2b,G,3,4H2bG03s695,s695,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,M5,TRUE,0.869843142,4,G03,N719,GCGTAGTA,S521,GAGCCTTA,GCGTAGTA-GAGCCTTA -364,319,SmartSeq2_Test4,4,H2b,G,4,4H2bG04s703,s703,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,M7,TRUE,0.428727727,4,G04,N720,CGGAGCCT,S521,GAGCCTTA,CGGAGCCT-GAGCCTTA -365,327,SmartSeq2_Test4,4,H2b,G,5,4H2bG05s711,s711,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,M9,TRUE,0.606751727,4,G05,N721,TACGCTGC,S521,GAGCCTTA,TACGCTGC-GAGCCTTA -366,335,SmartSeq2_Test4,4,H2b,G,6,4H2bG06s719,s719,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,M11,TRUE,0.571488861,4,G06,N722,ATGCGCAG,S521,GAGCCTTA,ATGCGCAG-GAGCCTTA -367,343,SmartSeq2_Test4,4,H2b,G,7,4H2bG07s727,s727,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,M13,TRUE,0.707529108,4,G07,N723,TAGCGCTC,S521,GAGCCTTA,TAGCGCTC-GAGCCTTA -368,351,SmartSeq2_Test4,4,H2b,G,8,4H2bG08s735,s735,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,M15,TRUE,1.154355709,4,G08,N724,ACTGAGCG,S521,GAGCCTTA,ACTGAGCG-GAGCCTTA -369,359,SmartSeq2_Test4,4,H2b,G,9,4H2bG09s743,s743,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,M17,TRUE,0.501169773,4,G09,N726,CCTAAGAC,S521,GAGCCTTA,CCTAAGAC-GAGCCTTA -370,367,SmartSeq2_Test4,4,H2b,G,10,4H2bG10s751,s751,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,M19,TRUE,0.563063703,4,G10,N727,CGATCAGT,S521,GAGCCTTA,CGATCAGT-GAGCCTTA -371,375,SmartSeq2_Test4,4,H2b,G,11,4H2bG11s759,s759,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_neg,K562,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,M21,TRUE,0.505210947,4,G11,N728,TGCAGCTA,S521,GAGCCTTA,TGCAGCTA-GAGCCTTA -372,383,SmartSeq2_Test4,4,H2b,G,12,4H2bG12c767,c767,fdf6302a-74aa-4927-89f2-109888eb4335,na,na,0,TRUE,FALSE,TRUE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,M23,TRUE,0.397535648,4,G12,N729,TCGACGTC,S521,GAGCCTTA,TCGACGTC-GAGCCTTA -373,296,SmartSeq2_Test4,4,H2b,H,1,4H2bH01s680,s680,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,O1,TRUE,0.136147788,4,H01,N716,ACTCGCTA,S522,TTATGCGA,ACTCGCTA-TTATGCGA -374,304,SmartSeq2_Test4,4,H2b,H,2,4H2bH02s688,s688,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,O3,TRUE,too low,4,H02,N718,GGAGCTAC,S522,TTATGCGA,GGAGCTAC-TTATGCGA -375,312,SmartSeq2_Test4,4,H2b,H,3,4H2bH03s696,s696,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,O5,TRUE,0.397325394,4,H03,N719,GCGTAGTA,S522,TTATGCGA,GCGTAGTA-TTATGCGA -376,320,SmartSeq2_Test4,4,H2b,H,4,4H2bH04s704,s704,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,O7,TRUE,0.240586731,4,H04,N720,CGGAGCCT,S522,TTATGCGA,CGGAGCCT-TTATGCGA -377,328,SmartSeq2_Test4,4,H2b,H,5,4H2bH05s712,s712,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,O9,TRUE,0.443053477,4,H05,N721,TACGCTGC,S522,TTATGCGA,TACGCTGC-TTATGCGA -378,336,SmartSeq2_Test4,4,H2b,H,6,4H2bH06s720,s720,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,O11,TRUE,0.266441499,4,H06,N722,ATGCGCAG,S522,TTATGCGA,ATGCGCAG-TTATGCGA -379,344,SmartSeq2_Test4,4,H2b,H,7,4H2bH07s728,s728,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,O13,TRUE,0.311399182,4,H07,N723,TAGCGCTC,S522,TTATGCGA,TAGCGCTC-TTATGCGA -380,352,SmartSeq2_Test4,4,H2b,H,8,4H2bH08s736,s736,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,O15,TRUE,0.806034086,4,H08,N724,ACTGAGCG,S522,TTATGCGA,ACTGAGCG-TTATGCGA -381,360,SmartSeq2_Test4,4,H2b,H,9,4H2bH09s744,s744,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,O17,TRUE,0.560953547,4,H09,N726,CCTAAGAC,S522,TTATGCGA,CCTAAGAC-TTATGCGA -382,368,SmartSeq2_Test4,4,H2b,H,10,4H2bH10s752,s752,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,O19,TRUE,0.618945229,4,H10,N727,CGATCAGT,S522,TTATGCGA,CGATCAGT-TTATGCGA -383,376,SmartSeq2_Test4,4,H2b,H,11,4H2bH11s760,s760,fdf6302a-74aa-4927-89f2-109888eb4335,CD3_pos,Jurkat,1,TRUE,FALSE,FALSE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,O21,TRUE,0.655133515,4,H11,N728,TGCAGCTA,S522,TTATGCGA,TGCAGCTA-TTATGCGA -384,384,SmartSeq2_Test4,4,H2b,H,12,4H2bH12c768,c768,fdf6302a-74aa-4927-89f2-109888eb4335,na,na,0,FALSE,FALSE,TRUE,2019-06-20_06-57-37_JL_SS2_test3_Plate4_Q1,O23,TRUE,0.002399743,4,H12,N729,TCGACGTC,S522,TTATGCGA,TCGACGTC-TTATGCGA diff --git a/flowchart.png b/flowchart.png new file mode 100644 index 0000000..077d680 Binary files /dev/null and b/flowchart.png differ diff --git a/sample_data/GENANNO-525.scqc-1.1.all_plates.config b/sample_data/GENANNO-525.scqc-1.1.all_plates.config new file mode 100644 index 0000000..4b61968 --- /dev/null +++ b/sample_data/GENANNO-525.scqc-1.1.all_plates.config @@ -0,0 +1,81 @@ + +params { + analysis_dir = "./Analysis/scqc_reqs-1.1/4plates.run2" + quantificationsoutdir = "$analysis_dir/quants_dir/" + qcoutdir = "$analysis_dir/qc_dir/" + samplesheet = "$analysis_dir/SampleSheet.all_plates.unix.csv" + reads='./Reads' + samplecsv="$analysis_dir/samples.csv" + mtnamefile='./Databases/scqc/Bos_taurus/ARS-UCD1.2/MT_cow_vector.rds' + species='Bos_taurus_with_TParva' + idx='./Databases/scqc/Bos_taurus.with.Theileria_theileria_parva/ARS-UCD1.2.and.PiroplasmaDB-55/Bos_taurus.ARS-UCD1.2.with.PiroplasmaDB-55_TparvaMuguga.kallisto.idx' + trans2gen_tsv='./Databases/scqc/Bos_taurus.with.Theileria_theileria_parva/ARS-UCD1.2.and.PiroplasmaDB-55/Bos_taurus.ARS-UCD1.2.with.PiroplasmaDB-55_TparvaMuguga.transcript_to_gene_mapping.tsv' + + pattern='?*_R{1,2}' + plate_ids=['CUB35DAY0','CUB35DAY7','CUB37DAY0','CUB37DAY7'] + RScript_dir="/ei/software/cb/singlecellQC/1.1/x86_64/bin/Scripts/" +} + +singularity { + enabled = true + autoMounts = true +} + +executor { + name='slurm' + queueSize=100 + pollInterval='3 min' + queueStatInterval='3 min' + exitReadTimeout='5 min' + dumpInterval='3 min' +} + + +process { + queue='ei-medium' + memory='5G' + time='1h' + cpus = 1 + + withLabel:image_rknit { + container = "/ei/software/cb/singlecellQC/1.1/x86_64/rknitr.img" + } + withLabel:image_rscater { + container = "/ei/software/cb/singlecellQC/1.1/x86_64/rscater.img" + } + + withName: qc { + memory='20G' + time='2h' + } + withName: tx2g { + queue='ei-medium' + memory='30G' + time='2h' + } + withName: quantification { + queue='ei-medium' + memory='10G' + time='2h' + cpus=2 + } + withName: doc { + queue='ei-medium' + memory='80G' + time='1h' + } +} + +timeline { + enabled = true + overwrite = true +} +report { + enabled = true + overwrite = true +} +trace { + enabled = true + overwrite = true +} + diff --git a/sample_data/SampleSheet.all_plates.unix.csv b/sample_data/SampleSheet.all_plates.unix.csv new file mode 100644 index 0000000..7356ddc --- /dev/null +++ b/sample_data/SampleSheet.all_plates.unix.csv @@ -0,0 +1,381 @@ +Lane,Sample_ID,Sample_Name,i7_index_ID,index,i5_index_ID,index2,Sample_Project,LibraryType,TaxonID,ScientificName,DataQCPipeline,UUID,DataAccessGroup,Sample_Plate,Sample_Well,row,column,control,number_of_cells,meta_1,meta_2 +1,CUB35DAY0A1,R0882-S0001_A68701,,TAAGGCGA,,ATAGAGAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,A1,A,1,FALSE,1,Day0, +1,CUB35DAY0A10,R0882-S0001_A68701,,CGTACTAG,,AGAGGATA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,A10,A,10,FALSE,1,Day0, +1,CUB35DAY0A12,R0882-S0001_A68701,,CGTACTAG,,TATGCAGT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,A12,A,12,FALSE,1,Day0, +1,CUB35DAY0A2,R0882-S0001_A68701,,TAAGGCGA,,AGAGGATA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,A2,A,2,FALSE,1,Day0, +1,CUB35DAY0A3,R0882-S0001_A68701,,TAAGGCGA,,CTCCTTAC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,A3,A,3,TRUE,50,Day0, +1,CUB35DAY0A4,R0882-S0001_A68701,,TAAGGCGA,,TATGCAGT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,A4,A,4,FALSE,1,Day0, +1,CUB35DAY0A5,R0882-S0001_A68701,,TAAGGCGA,,TACTCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,A5,A,5,FALSE,1,Day0, +1,CUB35DAY0A6,R0882-S0001_A68701,,TAAGGCGA,,AGGCTTAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,A6,A,6,FALSE,1,Day0, +1,CUB35DAY0A7,R0882-S0001_A68701,,TAAGGCGA,,ATTAGACG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,A7,A,7,FALSE,1,Day0, +1,CUB35DAY0A8,R0882-S0001_A68701,,TAAGGCGA,,CGGAGAGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,A8,A,8,FALSE,1,Day0, +1,CUB35DAY0A9,R0882-S0001_A68701,,CGTACTAG,,ATAGAGAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,A9,A,9,FALSE,1,Day0, +1,CUB35DAY0B1,R0882-S0001_A68701,,CGTACTAG,,TACTCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,B1,B,1,FALSE,1,Day0, +1,CUB35DAY0B10,R0882-S0001_A68701,,AGGCAGAA,,AGGCTTAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,B10,B,10,FALSE,1,Day0, +1,CUB35DAY0B11,R0882-S0001_A68701,,AGGCAGAA,,ATTAGACG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,B11,B,11,FALSE,1,Day0, +1,CUB35DAY0B12,R0882-S0001_A68701,,AGGCAGAA,,CGGAGAGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,B12,B,12,FALSE,1,Day0, +1,CUB35DAY0B2,R0882-S0001_A68701,,CGTACTAG,,AGGCTTAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,B2,B,2,FALSE,1,Day0, +1,CUB35DAY0B3,R0882-S0001_A68701,,CGTACTAG,,ATTAGACG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,B3,B,3,FALSE,1,Day0, +1,CUB35DAY0B4,R0882-S0001_A68701,,CGTACTAG,,CGGAGAGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,B4,B,4,FALSE,1,Day0, +1,CUB35DAY0B5,R0882-S0001_A68701,,AGGCAGAA,,ATAGAGAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,B5,B,5,FALSE,1,Day0, +1,CUB35DAY0B6,R0882-S0001_A68701,,AGGCAGAA,,AGAGGATA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,B6,B,6,FALSE,1,Day0, +1,CUB35DAY0B8,R0882-S0001_A68701,,AGGCAGAA,,TATGCAGT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,B8,B,8,FALSE,1,Day0, +1,CUB35DAY0B9,R0882-S0001_A68701,,AGGCAGAA,,TACTCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,B9,B,9,FALSE,1,Day0, +1,CUB35DAY0C1,R0882-S0001_A68701,,TCCTGAGC,,ATAGAGAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,C1,C,1,FALSE,1,Day0, +1,CUB35DAY0C10,R0882-S0001_A68701,,GGACTCCT,,AGAGGATA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,C10,C,10,FALSE,1,Day0, +1,CUB35DAY0C11,R0882-S0001_A68701,,GGACTCCT,,CTCCTTAC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,C11,C,11,FALSE,1,Day0, +1,CUB35DAY0C12,R0882-S0001_A68701,,GGACTCCT,,TATGCAGT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,C12,C,12,FALSE,1,Day0, +1,CUB35DAY0C2,R0882-S0001_A68701,,TCCTGAGC,,AGAGGATA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,C2,C,2,FALSE,1,Day0, +1,CUB35DAY0C4,R0882-S0001_A68701,,TCCTGAGC,,TATGCAGT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,C4,C,4,FALSE,1,Day0, +1,CUB35DAY0C5,R0882-S0001_A68701,,TCCTGAGC,,TACTCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,C5,C,5,FALSE,1,Day0, +1,CUB35DAY0C6,R0882-S0001_A68701,,TCCTGAGC,,AGGCTTAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,C6,C,6,FALSE,1,Day0, +1,CUB35DAY0C7,R0882-S0001_A68701,,TCCTGAGC,,ATTAGACG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,C7,C,7,FALSE,1,Day0, +1,CUB35DAY0C8,R0882-S0001_A68701,,TCCTGAGC,,CGGAGAGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,C8,C,8,FALSE,1,Day0, +1,CUB35DAY0C9,R0882-S0001_A68701,,GGACTCCT,,ATAGAGAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,C9,C,9,FALSE,1,Day0, +1,CUB35DAY0D1,R0882-S0001_A68701,,GGACTCCT,,TACTCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,D1,D,1,FALSE,1,Day0, +1,CUB35DAY0D10,R0882-S0001_A68701,,TAGGCATG,,AGGCTTAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,D10,D,10,FALSE,1,Day0, +1,CUB35DAY0D11,R0882-S0001_A68701,,TAGGCATG,,ATTAGACG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,D11,D,11,FALSE,1,Day0, +1,CUB35DAY0D12,R0882-S0001_A68701,,TAGGCATG,,CGGAGAGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,D12,D,12,FALSE,1,Day0, +1,CUB35DAY0D2,R0882-S0001_A68701,,GGACTCCT,,AGGCTTAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,D2,D,2,FALSE,1,Day0, +1,CUB35DAY0D3,R0882-S0001_A68701,,GGACTCCT,,ATTAGACG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,D3,D,3,FALSE,1,Day0, +1,CUB35DAY0D4,R0882-S0001_A68701,,GGACTCCT,,CGGAGAGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,D4,D,4,FALSE,1,Day0, +1,CUB35DAY0D5,R0882-S0001_A68701,,TAGGCATG,,ATAGAGAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,D5,D,5,FALSE,1,Day0, +1,CUB35DAY0D6,R0882-S0001_A68701,,TAGGCATG,,AGAGGATA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,D6,D,6,FALSE,1,Day0, +1,CUB35DAY0D7,R0882-S0001_A68701,,TAGGCATG,,CTCCTTAC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,D7,D,7,FALSE,1,Day0, +1,CUB35DAY0D8,R0882-S0001_A68701,,TAGGCATG,,TATGCAGT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,D8,D,8,FALSE,1,Day0, +1,CUB35DAY0D9,R0882-S0001_A68701,,TAGGCATG,,TACTCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,D9,D,9,FALSE,1,Day0, +1,CUB35DAY0E1,R0882-S0001_A68701,,CTCTCTAC,,ATAGAGAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,E1,E,1,FALSE,1,Day0, +1,CUB35DAY0E10,R0882-S0001_A68701,,CGAGGCTG,,AGAGGATA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,E10,E,10,FALSE,1,Day0, +1,CUB35DAY0E11,R0882-S0001_A68701,,CGAGGCTG,,CTCCTTAC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,E11,E,11,FALSE,1,Day0, +1,CUB35DAY0E12,R0882-S0001_A68701,,CGAGGCTG,,TATGCAGT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,E12,E,12,FALSE,1,Day0, +1,CUB35DAY0E2,R0882-S0001_A68701,,CTCTCTAC,,AGAGGATA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,E2,E,2,FALSE,1,Day0, +1,CUB35DAY0E3,R0882-S0001_A68701,,CTCTCTAC,,CTCCTTAC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,E3,E,3,FALSE,1,Day0, +1,CUB35DAY0E4,R0882-S0001_A68701,,CTCTCTAC,,TATGCAGT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,E4,E,4,FALSE,1,Day0, +1,CUB35DAY0E5,R0882-S0001_A68701,,CTCTCTAC,,TACTCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,E5,E,5,FALSE,1,Day0, +1,CUB35DAY0E6,R0882-S0001_A68701,,CTCTCTAC,,AGGCTTAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,E6,E,6,FALSE,1,Day0, +1,CUB35DAY0E7,R0882-S0001_A68701,,CTCTCTAC,,ATTAGACG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,E7,E,7,FALSE,1,Day0, +1,CUB35DAY0E8,R0882-S0001_A68701,,CTCTCTAC,,CGGAGAGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,E8,E,8,FALSE,1,Day0, +1,CUB35DAY0E9,R0882-S0001_A68701,,CGAGGCTG,,ATAGAGAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,E9,E,9,FALSE,1,Day0, +1,CUB35DAY0F1,R0882-S0001_A68701,,CGAGGCTG,,TACTCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,F1,F,1,FALSE,1,Day0, +1,CUB35DAY0F10,R0882-S0001_A68701,,AAGAGGCA,,AGGCTTAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,F10,F,10,FALSE,1,Day0, +1,CUB35DAY0F11,R0882-S0001_A68701,,AAGAGGCA,,ATTAGACG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,F11,F,11,FALSE,1,Day0, +1,CUB35DAY0F12,R0882-S0001_A68701,,AAGAGGCA,,CGGAGAGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,F12,F,12,FALSE,1,Day0, +1,CUB35DAY0F2,R0882-S0001_A68701,,CGAGGCTG,,AGGCTTAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,F2,F,2,FALSE,1,Day0, +1,CUB35DAY0F3,R0882-S0001_A68701,,CGAGGCTG,,ATTAGACG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,F3,F,3,FALSE,1,Day0, +1,CUB35DAY0F4,R0882-S0001_A68701,,CGAGGCTG,,CGGAGAGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,F4,F,4,FALSE,1,Day0, +1,CUB35DAY0F5,R0882-S0001_A68701,,AAGAGGCA,,ATAGAGAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,F5,F,5,FALSE,1,Day0, +1,CUB35DAY0F6,R0882-S0001_A68701,,AAGAGGCA,,AGAGGATA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,F6,F,6,FALSE,1,Day0, +1,CUB35DAY0F7,R0882-S0001_A68701,,AAGAGGCA,,CTCCTTAC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,F7,F,7,FALSE,1,Day0, +1,CUB35DAY0F8,R0882-S0001_A68701,,AAGAGGCA,,TATGCAGT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,F8,F,8,FALSE,1,Day0, +1,CUB35DAY0F9,R0882-S0001_A68701,,AAGAGGCA,,TACTCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,F9,F,9,FALSE,1,Day0, +1,CUB35DAY0G1,R0882-S0001_A68701,,GTAGAGGA,,ATAGAGAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,G1,G,1,FALSE,1,Day0, +1,CUB35DAY0G10,R0882-S0001_A68701,,GCTCATGA,,AGAGGATA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,G10,G,10,FALSE,1,Day0, +1,CUB35DAY0G11,R0882-S0001_A68701,,GCTCATGA,,CTCCTTAC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,G11,G,11,FALSE,1,Day0, +1,CUB35DAY0G12,R0882-S0001_A68701,,GCTCATGA,,TATGCAGT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,G12,G,12,FALSE,1,Day0, +1,CUB35DAY0G2,R0882-S0001_A68701,,GTAGAGGA,,AGAGGATA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,G2,G,2,FALSE,1,Day0, +1,CUB35DAY0G3,R0882-S0001_A68701,,GTAGAGGA,,CTCCTTAC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,G3,G,3,FALSE,1,Day0, +1,CUB35DAY0G4,R0882-S0001_A68701,,GTAGAGGA,,TATGCAGT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,G4,G,4,FALSE,1,Day0, +1,CUB35DAY0G5,R0882-S0001_A68701,,GTAGAGGA,,TACTCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,G5,G,5,FALSE,1,Day0, +1,CUB35DAY0G6,R0882-S0001_A68701,,GTAGAGGA,,AGGCTTAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,G6,G,6,FALSE,1,Day0, +1,CUB35DAY0G7,R0882-S0001_A68701,,GTAGAGGA,,ATTAGACG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,G7,G,7,FALSE,1,Day0, +1,CUB35DAY0G8,R0882-S0001_A68701,,GTAGAGGA,,CGGAGAGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,G8,G,8,FALSE,1,Day0, +1,CUB35DAY0G9,R0882-S0001_A68701,,GCTCATGA,,ATAGAGAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,G9,G,9,TRUE,50,Day0, +1,CUB35DAY0H1,R0882-S0001_A68701,,GCTCATGA,,TACTCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,H1,H,1,FALSE,1,Day0, +1,CUB35DAY0H10,R0882-S0001_A68701,,ATCTCAGG,,AGGCTTAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,H10,H,10,FALSE,1,Day0, +1,CUB35DAY0H11,R0882-S0001_A68701,,ATCTCAGG,,ATTAGACG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,H11,H,11,FALSE,1,Day0, +1,CUB35DAY0H12,R0882-S0001_A68701,,ATCTCAGG,,CGGAGAGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,H12,H,12,FALSE,1,Day0, +1,CUB35DAY0H2,R0882-S0001_A68701,,GCTCATGA,,AGGCTTAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,H2,H,2,FALSE,1,Day0, +1,CUB35DAY0H3,R0882-S0001_A68701,,GCTCATGA,,ATTAGACG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,H3,H,3,FALSE,1,Day0, +1,CUB35DAY0H4,R0882-S0001_A68701,,GCTCATGA,,CGGAGAGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,H4,H,4,FALSE,1,Day0, +1,CUB35DAY0H5,R0882-S0001_A68701,,ATCTCAGG,,ATAGAGAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,H5,H,5,FALSE,1,Day0, +1,CUB35DAY0H6,R0882-S0001_A68701,,ATCTCAGG,,AGAGGATA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,H6,H,6,FALSE,1,Day0, +1,CUB35DAY0H7,R0882-S0001_A68701,,ATCTCAGG,,CTCCTTAC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,H7,H,7,FALSE,1,Day0, +1,CUB35DAY0H8,R0882-S0001_A68701,,ATCTCAGG,,TATGCAGT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,H8,H,8,FALSE,1,Day0, +1,CUB35DAY0H9,R0882-S0001_A68701,,ATCTCAGG,,TACTCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY0,H9,H,9,FALSE,1,Day0, +1,CUB35DAY7A1,R0882-S0001_A68701,,TAAGGCGA,,CTAGTCGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,A1,A,1,FALSE,1,Day7, +1,CUB35DAY7A10,R0882-S0001_A68701,,CGTACTAG,,AGCTAGAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,A10,A,10,FALSE,1,Day7, +1,CUB35DAY7A11,R0882-S0001_A68701,,CGTACTAG,,ACTCTAGG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,A11,A,11,FALSE,1,Day7, +1,CUB35DAY7A12,R0882-S0001_A68701,,CGTACTAG,,TCTTACGC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,A12,A,12,FALSE,1,Day7, +1,CUB35DAY7A2,R0882-S0001_A68701,,TAAGGCGA,,AGCTAGAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,A2,A,2,FALSE,1,Day7, +1,CUB35DAY7A3,R0882-S0001_A68701,,TAAGGCGA,,ACTCTAGG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,A3,A,3,TRUE,50,Day7, +1,CUB35DAY7A4,R0882-S0001_A68701,,TAAGGCGA,,TCTTACGC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,A4,A,4,FALSE,1,Day7, +1,CUB35DAY7A5,R0882-S0001_A68701,,TAAGGCGA,,CTTAATAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,A5,A,5,FALSE,1,Day7, +1,CUB35DAY7A6,R0882-S0001_A68701,,TAAGGCGA,,ATAGCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,A6,A,6,FALSE,1,Day7, +1,CUB35DAY7A7,R0882-S0001_A68701,,TAAGGCGA,,TAAGGCTC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,A7,A,7,FALSE,1,Day7, +1,CUB35DAY7A8,R0882-S0001_A68701,,TAAGGCGA,,TCGCATAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,A8,A,8,FALSE,1,Day7, +1,CUB35DAY7A9,R0882-S0001_A68701,,CGTACTAG,,CTAGTCGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,A9,A,9,FALSE,1,Day7, +1,CUB35DAY7B1,R0882-S0001_A68701,,CGTACTAG,,CTTAATAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,B1,B,1,FALSE,1,Day7, +1,CUB35DAY7B10,R0882-S0001_A68701,,AGGCAGAA,,ATAGCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,B10,B,10,FALSE,1,Day7, +1,CUB35DAY7B11,R0882-S0001_A68701,,AGGCAGAA,,TAAGGCTC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,B11,B,11,FALSE,1,Day7, +1,CUB35DAY7B12,R0882-S0001_A68701,,AGGCAGAA,,TCGCATAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,B12,B,12,FALSE,1,Day7, +1,CUB35DAY7B2,R0882-S0001_A68701,,CGTACTAG,,ATAGCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,B2,B,2,FALSE,1,Day7, +1,CUB35DAY7B3,R0882-S0001_A68701,,CGTACTAG,,TAAGGCTC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,B3,B,3,FALSE,1,Day7, +1,CUB35DAY7B4,R0882-S0001_A68701,,CGTACTAG,,TCGCATAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,B4,B,4,FALSE,1,Day7, +1,CUB35DAY7B5,R0882-S0001_A68701,,AGGCAGAA,,CTAGTCGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,B5,B,5,FALSE,1,Day7, +1,CUB35DAY7B6,R0882-S0001_A68701,,AGGCAGAA,,AGCTAGAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,B6,B,6,FALSE,1,Day7, +1,CUB35DAY7B7,R0882-S0001_A68701,,AGGCAGAA,,ACTCTAGG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,B7,B,7,FALSE,1,Day7, +1,CUB35DAY7B8,R0882-S0001_A68701,,AGGCAGAA,,TCTTACGC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,B8,B,8,FALSE,1,Day7, +1,CUB35DAY7B9,R0882-S0001_A68701,,AGGCAGAA,,CTTAATAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,B9,B,9,FALSE,1,Day7, +1,CUB35DAY7C1,R0882-S0001_A68701,,TCCTGAGC,,CTAGTCGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,C1,C,1,FALSE,1,Day7, +1,CUB35DAY7C10,R0882-S0001_A68701,,GGACTCCT,,AGCTAGAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,C10,C,10,FALSE,1,Day7, +1,CUB35DAY7C11,R0882-S0001_A68701,,GGACTCCT,,ACTCTAGG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,C11,C,11,FALSE,1,Day7, +1,CUB35DAY7C12,R0882-S0001_A68701,,GGACTCCT,,TCTTACGC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,C12,C,12,FALSE,1,Day7, +1,CUB35DAY7C2,R0882-S0001_A68701,,TCCTGAGC,,AGCTAGAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,C2,C,2,FALSE,1,Day7, +1,CUB35DAY7C3,R0882-S0001_A68701,,TCCTGAGC,,ACTCTAGG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,C3,C,3,FALSE,1,Day7, +1,CUB35DAY7C4,R0882-S0001_A68701,,TCCTGAGC,,TCTTACGC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,C4,C,4,FALSE,1,Day7, +1,CUB35DAY7C5,R0882-S0001_A68701,,TCCTGAGC,,CTTAATAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,C5,C,5,FALSE,1,Day7, +1,CUB35DAY7C6,R0882-S0001_A68701,,TCCTGAGC,,ATAGCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,C6,C,6,FALSE,1,Day7, +1,CUB35DAY7C7,R0882-S0001_A68701,,TCCTGAGC,,TAAGGCTC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,C7,C,7,FALSE,1,Day7, +1,CUB35DAY7C8,R0882-S0001_A68701,,TCCTGAGC,,TCGCATAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,C8,C,8,FALSE,1,Day7, +1,CUB35DAY7C9,R0882-S0001_A68701,,GGACTCCT,,CTAGTCGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,C9,C,9,FALSE,1,Day7, +1,CUB35DAY7D1,R0882-S0001_A68701,,GGACTCCT,,CTTAATAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,D1,D,1,FALSE,1,Day7, +1,CUB35DAY7D10,R0882-S0001_A68701,,TAGGCATG,,ATAGCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,D10,D,10,FALSE,1,Day7, +1,CUB35DAY7D11,R0882-S0001_A68701,,TAGGCATG,,TAAGGCTC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,D11,D,11,FALSE,1,Day7, +1,CUB35DAY7D12,R0882-S0001_A68701,,TAGGCATG,,TCGCATAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,D12,D,12,FALSE,1,Day7, +1,CUB35DAY7D2,R0882-S0001_A68701,,GGACTCCT,,ATAGCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,D2,D,2,FALSE,1,Day7, +1,CUB35DAY7D3,R0882-S0001_A68701,,GGACTCCT,,TAAGGCTC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,D3,D,3,FALSE,1,Day7, +1,CUB35DAY7D4,R0882-S0001_A68701,,GGACTCCT,,TCGCATAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,D4,D,4,FALSE,1,Day7, +1,CUB35DAY7D5,R0882-S0001_A68701,,TAGGCATG,,CTAGTCGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,D5,D,5,FALSE,1,Day7, +1,CUB35DAY7D6,R0882-S0001_A68701,,TAGGCATG,,AGCTAGAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,D6,D,6,FALSE,1,Day7, +1,CUB35DAY7D7,R0882-S0001_A68701,,TAGGCATG,,ACTCTAGG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,D7,D,7,FALSE,1,Day7, +1,CUB35DAY7D8,R0882-S0001_A68701,,TAGGCATG,,TCTTACGC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,D8,D,8,FALSE,1,Day7, +1,CUB35DAY7D9,R0882-S0001_A68701,,TAGGCATG,,CTTAATAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,D9,D,9,FALSE,1,Day7, +1,CUB35DAY7E1,R0882-S0001_A68701,,CTCTCTAC,,CTAGTCGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,E1,E,1,FALSE,1,Day7, +1,CUB35DAY7E10,R0882-S0001_A68701,,CGAGGCTG,,AGCTAGAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,E10,E,10,FALSE,1,Day7, +1,CUB35DAY7E11,R0882-S0001_A68701,,CGAGGCTG,,ACTCTAGG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,E11,E,11,FALSE,1,Day7, +1,CUB35DAY7E12,R0882-S0001_A68701,,CGAGGCTG,,TCTTACGC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,E12,E,12,FALSE,1,Day7, +1,CUB35DAY7E2,R0882-S0001_A68701,,CTCTCTAC,,AGCTAGAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,E2,E,2,FALSE,1,Day7, +1,CUB35DAY7E3,R0882-S0001_A68701,,CTCTCTAC,,ACTCTAGG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,E3,E,3,FALSE,1,Day7, +1,CUB35DAY7E4,R0882-S0001_A68701,,CTCTCTAC,,TCTTACGC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,E4,E,4,FALSE,1,Day7, +1,CUB35DAY7E5,R0882-S0001_A68701,,CTCTCTAC,,CTTAATAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,E5,E,5,FALSE,1,Day7, +1,CUB35DAY7E6,R0882-S0001_A68701,,CTCTCTAC,,ATAGCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,E6,E,6,FALSE,1,Day7, +1,CUB35DAY7E7,R0882-S0001_A68701,,CTCTCTAC,,TAAGGCTC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,E7,E,7,FALSE,1,Day7, +1,CUB35DAY7E8,R0882-S0001_A68701,,CTCTCTAC,,TCGCATAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,E8,E,8,FALSE,1,Day7, +1,CUB35DAY7E9,R0882-S0001_A68701,,CGAGGCTG,,CTAGTCGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,E9,E,9,FALSE,1,Day7, +1,CUB35DAY7F1,R0882-S0001_A68701,,CGAGGCTG,,CTTAATAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,F1,F,1,FALSE,1,Day7, +1,CUB35DAY7F10,R0882-S0001_A68701,,AAGAGGCA,,ATAGCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,F10,F,10,FALSE,1,Day7, +1,CUB35DAY7F11,R0882-S0001_A68701,,AAGAGGCA,,TAAGGCTC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,F11,F,11,FALSE,1,Day7, +1,CUB35DAY7F12,R0882-S0001_A68701,,AAGAGGCA,,TCGCATAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,F12,F,12,FALSE,1,Day7, +1,CUB35DAY7F2,R0882-S0001_A68701,,CGAGGCTG,,ATAGCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,F2,F,2,FALSE,1,Day7, +1,CUB35DAY7F3,R0882-S0001_A68701,,CGAGGCTG,,TAAGGCTC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,F3,F,3,FALSE,1,Day7, +1,CUB35DAY7F4,R0882-S0001_A68701,,CGAGGCTG,,TCGCATAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,F4,F,4,FALSE,1,Day7, +1,CUB35DAY7F5,R0882-S0001_A68701,,AAGAGGCA,,CTAGTCGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,F5,F,5,FALSE,1,Day7, +1,CUB35DAY7F6,R0882-S0001_A68701,,AAGAGGCA,,AGCTAGAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,F6,F,6,FALSE,1,Day7, +1,CUB35DAY7F7,R0882-S0001_A68701,,AAGAGGCA,,ACTCTAGG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,F7,F,7,FALSE,1,Day7, +1,CUB35DAY7F8,R0882-S0001_A68701,,AAGAGGCA,,TCTTACGC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,F8,F,8,FALSE,1,Day7, +1,CUB35DAY7F9,R0882-S0001_A68701,,AAGAGGCA,,CTTAATAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,F9,F,9,FALSE,1,Day7, +1,CUB35DAY7G1,R0882-S0001_A68701,,GTAGAGGA,,CTAGTCGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,G1,G,1,FALSE,1,Day7, +1,CUB35DAY7G10,R0882-S0001_A68701,,GCTCATGA,,AGCTAGAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,G10,G,10,FALSE,1,Day7, +1,CUB35DAY7G11,R0882-S0001_A68701,,GCTCATGA,,ACTCTAGG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,G11,G,11,FALSE,1,Day7, +1,CUB35DAY7G12,R0882-S0001_A68701,,GCTCATGA,,TCTTACGC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,G12,G,12,FALSE,1,Day7, +1,CUB35DAY7G2,R0882-S0001_A68701,,GTAGAGGA,,AGCTAGAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,G2,G,2,FALSE,1,Day7, +1,CUB35DAY7G3,R0882-S0001_A68701,,GTAGAGGA,,ACTCTAGG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,G3,G,3,FALSE,1,Day7, +1,CUB35DAY7G4,R0882-S0001_A68701,,GTAGAGGA,,TCTTACGC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,G4,G,4,FALSE,1,Day7, +1,CUB35DAY7G5,R0882-S0001_A68701,,GTAGAGGA,,CTTAATAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,G5,G,5,FALSE,1,Day7, +1,CUB35DAY7G6,R0882-S0001_A68701,,GTAGAGGA,,ATAGCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,G6,G,6,FALSE,1,Day7, +1,CUB35DAY7G7,R0882-S0001_A68701,,GTAGAGGA,,TAAGGCTC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,G7,G,7,FALSE,1,Day7, +1,CUB35DAY7G8,R0882-S0001_A68701,,GTAGAGGA,,TCGCATAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,G8,G,8,FALSE,1,Day7, +1,CUB35DAY7G9,R0882-S0001_A68701,,GCTCATGA,,CTAGTCGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,G9,G,9,TRUE,50,Day7, +1,CUB35DAY7H1,R0882-S0001_A68701,,GCTCATGA,,CTTAATAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,H1,H,1,FALSE,1,Day7, +1,CUB35DAY7H10,R0882-S0001_A68701,,ATCTCAGG,,ATAGCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,H10,H,10,FALSE,1,Day7, +1,CUB35DAY7H11,R0882-S0001_A68701,,ATCTCAGG,,TAAGGCTC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,H11,H,11,FALSE,1,Day7, +1,CUB35DAY7H12,R0882-S0001_A68701,,ATCTCAGG,,TCGCATAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,H12,H,12,FALSE,1,Day7, +1,CUB35DAY7H2,R0882-S0001_A68701,,GCTCATGA,,ATAGCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,H2,H,2,FALSE,1,Day7, +1,CUB35DAY7H3,R0882-S0001_A68701,,GCTCATGA,,TAAGGCTC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,H3,H,3,FALSE,1,Day7, +1,CUB35DAY7H4,R0882-S0001_A68701,,GCTCATGA,,TCGCATAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,H4,H,4,FALSE,1,Day7, +1,CUB35DAY7H5,R0882-S0001_A68701,,ATCTCAGG,,CTAGTCGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,H5,H,5,FALSE,1,Day7, +1,CUB35DAY7H6,R0882-S0001_A68701,,ATCTCAGG,,AGCTAGAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,H6,H,6,FALSE,1,Day7, +1,CUB35DAY7H7,R0882-S0001_A68701,,ATCTCAGG,,ACTCTAGG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,H7,H,7,FALSE,1,Day7, +1,CUB35DAY7H8,R0882-S0001_A68701,,ATCTCAGG,,TCTTACGC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,H8,H,8,FALSE,1,Day7, +1,CUB35DAY7H9,R0882-S0001_A68701,,ATCTCAGG,,CTTAATAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB35DAY7,H9,H,9,FALSE,1,Day7, +1,CUB37DAY0A1,R0882-S0001_A68701,,ACTCGCTA,,ATAGAGAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,A1,A,1,FALSE,1,Day0, +1,CUB37DAY0A10,R0882-S0001_A68701,,GGAGCTAC,,AGAGGATA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,A10,A,10,FALSE,1,Day0, +1,CUB37DAY0A11,R0882-S0001_A68701,,GGAGCTAC,,CTCCTTAC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,A11,A,11,FALSE,1,Day0, +1,CUB37DAY0A12,R0882-S0001_A68701,,GGAGCTAC,,TATGCAGT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,A12,A,12,FALSE,1,Day0, +1,CUB37DAY0A2,R0882-S0001_A68701,,ACTCGCTA,,AGAGGATA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,A2,A,2,FALSE,1,Day0, +1,CUB37DAY0A3,R0882-S0001_A68701,,ACTCGCTA,,CTCCTTAC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,A3,A,3,TRUE,50,Day0, +1,CUB37DAY0A4,R0882-S0001_A68701,,ACTCGCTA,,TATGCAGT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,A4,A,4,FALSE,1,Day0, +1,CUB37DAY0A5,R0882-S0001_A68701,,ACTCGCTA,,TACTCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,A5,A,5,FALSE,1,Day0, +1,CUB37DAY0A6,R0882-S0001_A68701,,ACTCGCTA,,AGGCTTAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,A6,A,6,FALSE,1,Day0, +1,CUB37DAY0A7,R0882-S0001_A68701,,ACTCGCTA,,ATTAGACG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,A7,A,7,FALSE,1,Day0, +1,CUB37DAY0A8,R0882-S0001_A68701,,ACTCGCTA,,CGGAGAGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,A8,A,8,FALSE,1,Day0, +1,CUB37DAY0A9,R0882-S0001_A68701,,GGAGCTAC,,ATAGAGAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,A9,A,9,FALSE,1,Day0, +1,CUB37DAY0B1,R0882-S0001_A68701,,GGAGCTAC,,TACTCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,B1,B,1,FALSE,1,Day0, +1,CUB37DAY0B10,R0882-S0001_A68701,,GCGTAGTA,,AGGCTTAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,B10,B,10,FALSE,1,Day0, +1,CUB37DAY0B11,R0882-S0001_A68701,,GCGTAGTA,,ATTAGACG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,B11,B,11,FALSE,1,Day0, +1,CUB37DAY0B12,R0882-S0001_A68701,,GCGTAGTA,,CGGAGAGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,B12,B,12,FALSE,1,Day0, +1,CUB37DAY0B2,R0882-S0001_A68701,,GGAGCTAC,,AGGCTTAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,B2,B,2,FALSE,1,Day0, +1,CUB37DAY0B3,R0882-S0001_A68701,,GGAGCTAC,,ATTAGACG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,B3,B,3,FALSE,1,Day0, +1,CUB37DAY0B4,R0882-S0001_A68701,,GGAGCTAC,,CGGAGAGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,B4,B,4,FALSE,1,Day0, +1,CUB37DAY0B5,R0882-S0001_A68701,,GCGTAGTA,,ATAGAGAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,B5,B,5,FALSE,1,Day0, +1,CUB37DAY0B6,R0882-S0001_A68701,,GCGTAGTA,,AGAGGATA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,B6,B,6,FALSE,1,Day0, +1,CUB37DAY0B7,R0882-S0001_A68701,,GCGTAGTA,,CTCCTTAC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,B7,B,7,FALSE,1,Day0, +1,CUB37DAY0B8,R0882-S0001_A68701,,GCGTAGTA,,TATGCAGT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,B8,B,8,FALSE,1,Day0, +1,CUB37DAY0B9,R0882-S0001_A68701,,GCGTAGTA,,TACTCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,B9,B,9,FALSE,1,Day0, +1,CUB37DAY0C1,R0882-S0001_A68701,,CGGAGCCT,,ATAGAGAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,C1,C,1,FALSE,1,Day0, +1,CUB37DAY0C10,R0882-S0001_A68701,,TACGCTGC,,AGAGGATA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,C10,C,10,FALSE,1,Day0, +1,CUB37DAY0C11,R0882-S0001_A68701,,TACGCTGC,,CTCCTTAC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,C11,C,11,FALSE,1,Day0, +1,CUB37DAY0C12,R0882-S0001_A68701,,TACGCTGC,,TATGCAGT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,C12,C,12,FALSE,1,Day0, +1,CUB37DAY0C2,R0882-S0001_A68701,,CGGAGCCT,,AGAGGATA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,C2,C,2,FALSE,1,Day0, +1,CUB37DAY0C3,R0882-S0001_A68701,,CGGAGCCT,,CTCCTTAC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,C3,C,3,FALSE,1,Day0, +1,CUB37DAY0C4,R0882-S0001_A68701,,CGGAGCCT,,TATGCAGT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,C4,C,4,FALSE,1,Day0, +1,CUB37DAY0C5,R0882-S0001_A68701,,CGGAGCCT,,TACTCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,C5,C,5,FALSE,1,Day0, +1,CUB37DAY0C6,R0882-S0001_A68701,,CGGAGCCT,,AGGCTTAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,C6,C,6,FALSE,1,Day0, +1,CUB37DAY0C7,R0882-S0001_A68701,,CGGAGCCT,,ATTAGACG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,C7,C,7,FALSE,1,Day0, +1,CUB37DAY0C8,R0882-S0001_A68701,,CGGAGCCT,,CGGAGAGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,C8,C,8,FALSE,1,Day0, +1,CUB37DAY0C9,R0882-S0001_A68701,,TACGCTGC,,ATAGAGAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,C9,C,9,FALSE,1,Day0, +1,CUB37DAY0D1,R0882-S0001_A68701,,TACGCTGC,,TACTCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,D1,D,1,FALSE,1,Day0, +1,CUB37DAY0D10,R0882-S0001_A68701,,ATGCGCAG,,AGGCTTAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,D10,D,10,FALSE,1,Day0, +1,CUB37DAY0D11,R0882-S0001_A68701,,ATGCGCAG,,ATTAGACG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,D11,D,11,FALSE,1,Day0, +1,CUB37DAY0D12,R0882-S0001_A68701,,ATGCGCAG,,CGGAGAGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,D12,D,12,FALSE,1,Day0, +1,CUB37DAY0D2,R0882-S0001_A68701,,TACGCTGC,,AGGCTTAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,D2,D,2,FALSE,1,Day0, +1,CUB37DAY0D3,R0882-S0001_A68701,,TACGCTGC,,ATTAGACG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,D3,D,3,FALSE,1,Day0, +1,CUB37DAY0D4,R0882-S0001_A68701,,TACGCTGC,,CGGAGAGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,D4,D,4,FALSE,1,Day0, +1,CUB37DAY0D5,R0882-S0001_A68701,,ATGCGCAG,,ATAGAGAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,D5,D,5,FALSE,1,Day0, +1,CUB37DAY0D6,R0882-S0001_A68701,,ATGCGCAG,,AGAGGATA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,D6,D,6,FALSE,1,Day0, +1,CUB37DAY0D7,R0882-S0001_A68701,,ATGCGCAG,,CTCCTTAC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,D7,D,7,FALSE,1,Day0, +1,CUB37DAY0D8,R0882-S0001_A68701,,ATGCGCAG,,TATGCAGT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,D8,D,8,FALSE,1,Day0, +1,CUB37DAY0D9,R0882-S0001_A68701,,ATGCGCAG,,TACTCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,D9,D,9,FALSE,1,Day0, +1,CUB37DAY0E1,R0882-S0001_A68701,,TAGCGCTC,,ATAGAGAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,E1,E,1,FALSE,1,Day0, +1,CUB37DAY0E10,R0882-S0001_A68701,,ACTGAGCG,,AGAGGATA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,E10,E,10,FALSE,1,Day0, +1,CUB37DAY0E11,R0882-S0001_A68701,,ACTGAGCG,,CTCCTTAC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,E11,E,11,FALSE,1,Day0, +1,CUB37DAY0E12,R0882-S0001_A68701,,ACTGAGCG,,TATGCAGT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,E12,E,12,FALSE,1,Day0, +1,CUB37DAY0E2,R0882-S0001_A68701,,TAGCGCTC,,AGAGGATA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,E2,E,2,FALSE,1,Day0, +1,CUB37DAY0E3,R0882-S0001_A68701,,TAGCGCTC,,CTCCTTAC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,E3,E,3,FALSE,1,Day0, +1,CUB37DAY0E4,R0882-S0001_A68701,,TAGCGCTC,,TATGCAGT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,E4,E,4,FALSE,1,Day0, +1,CUB37DAY0E5,R0882-S0001_A68701,,TAGCGCTC,,TACTCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,E5,E,5,FALSE,1,Day0, +1,CUB37DAY0E6,R0882-S0001_A68701,,TAGCGCTC,,AGGCTTAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,E6,E,6,FALSE,1,Day0, +1,CUB37DAY0E7,R0882-S0001_A68701,,TAGCGCTC,,ATTAGACG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,E7,E,7,FALSE,1,Day0, +1,CUB37DAY0E8,R0882-S0001_A68701,,TAGCGCTC,,CGGAGAGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,E8,E,8,FALSE,1,Day0, +1,CUB37DAY0E9,R0882-S0001_A68701,,ACTGAGCG,,ATAGAGAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,E9,E,9,FALSE,1,Day0, +1,CUB37DAY0F1,R0882-S0001_A68701,,ACTGAGCG,,TACTCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,F1,F,1,FALSE,1,Day0, +1,CUB37DAY0F10,R0882-S0001_A68701,,CCTAAGAC,,AGGCTTAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,F10,F,10,FALSE,1,Day0, +1,CUB37DAY0F11,R0882-S0001_A68701,,CCTAAGAC,,ATTAGACG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,F11,F,11,FALSE,1,Day0, +1,CUB37DAY0F12,R0882-S0001_A68701,,CCTAAGAC,,CGGAGAGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,F12,F,12,FALSE,1,Day0, +1,CUB37DAY0F2,R0882-S0001_A68701,,ACTGAGCG,,AGGCTTAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,F2,F,2,FALSE,1,Day0, +1,CUB37DAY0F3,R0882-S0001_A68701,,ACTGAGCG,,ATTAGACG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,F3,F,3,FALSE,1,Day0, +1,CUB37DAY0F4,R0882-S0001_A68701,,ACTGAGCG,,CGGAGAGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,F4,F,4,FALSE,1,Day0, +1,CUB37DAY0F5,R0882-S0001_A68701,,CCTAAGAC,,ATAGAGAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,F5,F,5,FALSE,1,Day0, +1,CUB37DAY0F6,R0882-S0001_A68701,,CCTAAGAC,,AGAGGATA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,F6,F,6,FALSE,1,Day0, +1,CUB37DAY0F7,R0882-S0001_A68701,,CCTAAGAC,,CTCCTTAC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,F7,F,7,FALSE,1,Day0, +1,CUB37DAY0F8,R0882-S0001_A68701,,CCTAAGAC,,TATGCAGT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,F8,F,8,FALSE,1,Day0, +1,CUB37DAY0F9,R0882-S0001_A68701,,CCTAAGAC,,TACTCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,F9,F,9,FALSE,1,Day0, +1,CUB37DAY0G1,R0882-S0001_A68701,,CGATCAGT,,ATAGAGAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,G1,G,1,FALSE,1,Day0, +1,CUB37DAY0G10,R0882-S0001_A68701,,TGCAGCTA,,AGAGGATA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,G10,G,10,FALSE,1,Day0, +1,CUB37DAY0G11,R0882-S0001_A68701,,TGCAGCTA,,CTCCTTAC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,G11,G,11,FALSE,1,Day0, +1,CUB37DAY0G12,R0882-S0001_A68701,,TGCAGCTA,,TATGCAGT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,G12,G,12,FALSE,1,Day0, +1,CUB37DAY0G2,R0882-S0001_A68701,,CGATCAGT,,AGAGGATA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,G2,G,2,FALSE,1,Day0, +1,CUB37DAY0G4,R0882-S0001_A68701,,CGATCAGT,,TATGCAGT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,G4,G,4,FALSE,1,Day0, +1,CUB37DAY0G5,R0882-S0001_A68701,,CGATCAGT,,TACTCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,G5,G,5,FALSE,1,Day0, +1,CUB37DAY0G6,R0882-S0001_A68701,,CGATCAGT,,AGGCTTAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,G6,G,6,FALSE,1,Day0, +1,CUB37DAY0G7,R0882-S0001_A68701,,CGATCAGT,,ATTAGACG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,G7,G,7,FALSE,1,Day0, +1,CUB37DAY0G8,R0882-S0001_A68701,,CGATCAGT,,CGGAGAGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,G8,G,8,FALSE,1,Day0, +1,CUB37DAY0G9,R0882-S0001_A68701,,TGCAGCTA,,ATAGAGAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,G9,G,9,TRUE,50,Day0, +1,CUB37DAY0H1,R0882-S0001_A68701,,TGCAGCTA,,TACTCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,H1,H,1,FALSE,1,Day0, +1,CUB37DAY0H10,R0882-S0001_A68701,,TCGACGTC,,AGGCTTAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,H10,H,10,FALSE,1,Day0, +1,CUB37DAY0H11,R0882-S0001_A68701,,TCGACGTC,,ATTAGACG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,H11,H,11,FALSE,1,Day0, +1,CUB37DAY0H12,R0882-S0001_A68701,,TCGACGTC,,CGGAGAGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,H12,H,12,FALSE,1,Day0, +1,CUB37DAY0H2,R0882-S0001_A68701,,TGCAGCTA,,AGGCTTAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,H2,H,2,FALSE,1,Day0, +1,CUB37DAY0H3,R0882-S0001_A68701,,TGCAGCTA,,ATTAGACG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,H3,H,3,FALSE,1,Day0, +1,CUB37DAY0H4,R0882-S0001_A68701,,TGCAGCTA,,CGGAGAGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,H4,H,4,FALSE,1,Day0, +1,CUB37DAY0H5,R0882-S0001_A68701,,TCGACGTC,,ATAGAGAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,H5,H,5,FALSE,1,Day0, +1,CUB37DAY0H6,R0882-S0001_A68701,,TCGACGTC,,AGAGGATA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,H6,H,6,FALSE,1,Day0, +1,CUB37DAY0H7,R0882-S0001_A68701,,TCGACGTC,,CTCCTTAC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,H7,H,7,FALSE,1,Day0, +1,CUB37DAY0H8,R0882-S0001_A68701,,TCGACGTC,,TATGCAGT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,H8,H,8,FALSE,1,Day0, +1,CUB37DAY0H9,R0882-S0001_A68701,,TCGACGTC,,TACTCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY0,H9,H,9,FALSE,1,Day0, +1,CUB37DAY7A1,R0882-S0001_A68701,,ACTCGCTA,,CTAGTCGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,A1,A,1,FALSE,1,Day7, +1,CUB37DAY7A10,R0882-S0001_A68701,,GGAGCTAC,,AGCTAGAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,A10,A,10,FALSE,1,Day7, +1,CUB37DAY7A11,R0882-S0001_A68701,,GGAGCTAC,,ACTCTAGG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,A11,A,11,FALSE,1,Day7, +1,CUB37DAY7A12,R0882-S0001_A68701,,GGAGCTAC,,TCTTACGC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,A12,A,12,FALSE,1,Day7, +1,CUB37DAY7A2,R0882-S0001_A68701,,ACTCGCTA,,AGCTAGAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,A2,A,2,FALSE,1,Day7, +1,CUB37DAY7A3,R0882-S0001_A68701,,ACTCGCTA,,ACTCTAGG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,A3,A,3,TRUE,50,Day7, +1,CUB37DAY7A4,R0882-S0001_A68701,,ACTCGCTA,,TCTTACGC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,A4,A,4,FALSE,1,Day7, +1,CUB37DAY7A5,R0882-S0001_A68701,,ACTCGCTA,,CTTAATAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,A5,A,5,FALSE,1,Day7, +1,CUB37DAY7A6,R0882-S0001_A68701,,ACTCGCTA,,ATAGCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,A6,A,6,FALSE,1,Day7, +1,CUB37DAY7A7,R0882-S0001_A68701,,ACTCGCTA,,TAAGGCTC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,A7,A,7,FALSE,1,Day7, +1,CUB37DAY7A8,R0882-S0001_A68701,,ACTCGCTA,,TCGCATAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,A8,A,8,FALSE,1,Day7, +1,CUB37DAY7A9,R0882-S0001_A68701,,GGAGCTAC,,CTAGTCGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,A9,A,9,FALSE,1,Day7, +1,CUB37DAY7B1,R0882-S0001_A68701,,GGAGCTAC,,CTTAATAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,B1,B,1,FALSE,1,Day7, +1,CUB37DAY7B10,R0882-S0001_A68701,,GCGTAGTA,,ATAGCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,B10,B,10,FALSE,1,Day7, +1,CUB37DAY7B11,R0882-S0001_A68701,,GCGTAGTA,,TAAGGCTC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,B11,B,11,FALSE,1,Day7, +1,CUB37DAY7B12,R0882-S0001_A68701,,GCGTAGTA,,TCGCATAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,B12,B,12,FALSE,1,Day7, +1,CUB37DAY7B2,R0882-S0001_A68701,,GGAGCTAC,,ATAGCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,B2,B,2,FALSE,1,Day7, +1,CUB37DAY7B3,R0882-S0001_A68701,,GGAGCTAC,,TAAGGCTC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,B3,B,3,FALSE,1,Day7, +1,CUB37DAY7B4,R0882-S0001_A68701,,GGAGCTAC,,TCGCATAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,B4,B,4,FALSE,1,Day7, +1,CUB37DAY7B5,R0882-S0001_A68701,,GCGTAGTA,,CTAGTCGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,B5,B,5,FALSE,1,Day7, +1,CUB37DAY7B6,R0882-S0001_A68701,,GCGTAGTA,,AGCTAGAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,B6,B,6,FALSE,1,Day7, +1,CUB37DAY7B7,R0882-S0001_A68701,,GCGTAGTA,,ACTCTAGG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,B7,B,7,FALSE,1,Day7, +1,CUB37DAY7B8,R0882-S0001_A68701,,GCGTAGTA,,TCTTACGC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,B8,B,8,FALSE,1,Day7, +1,CUB37DAY7B9,R0882-S0001_A68701,,GCGTAGTA,,CTTAATAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,B9,B,9,FALSE,1,Day7, +1,CUB37DAY7C1,R0882-S0001_A68701,,CGGAGCCT,,CTAGTCGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,C1,C,1,FALSE,1,Day7, +1,CUB37DAY7C10,R0882-S0001_A68701,,TACGCTGC,,AGCTAGAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,C10,C,10,FALSE,1,Day7, +1,CUB37DAY7C11,R0882-S0001_A68701,,TACGCTGC,,ACTCTAGG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,C11,C,11,FALSE,1,Day7, +1,CUB37DAY7C12,R0882-S0001_A68701,,TACGCTGC,,TCTTACGC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,C12,C,12,FALSE,1,Day7, +1,CUB37DAY7C2,R0882-S0001_A68701,,CGGAGCCT,,AGCTAGAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,C2,C,2,FALSE,1,Day7, +1,CUB37DAY7C3,R0882-S0001_A68701,,CGGAGCCT,,ACTCTAGG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,C3,C,3,FALSE,1,Day7, +1,CUB37DAY7C4,R0882-S0001_A68701,,CGGAGCCT,,TCTTACGC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,C4,C,4,FALSE,1,Day7, +1,CUB37DAY7C5,R0882-S0001_A68701,,CGGAGCCT,,CTTAATAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,C5,C,5,FALSE,1,Day7, +1,CUB37DAY7C6,R0882-S0001_A68701,,CGGAGCCT,,ATAGCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,C6,C,6,FALSE,1,Day7, +1,CUB37DAY7C7,R0882-S0001_A68701,,CGGAGCCT,,TAAGGCTC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,C7,C,7,FALSE,1,Day7, +1,CUB37DAY7C8,R0882-S0001_A68701,,CGGAGCCT,,TCGCATAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,C8,C,8,FALSE,1,Day7, +1,CUB37DAY7C9,R0882-S0001_A68701,,TACGCTGC,,CTAGTCGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,C9,C,9,FALSE,1,Day7, +1,CUB37DAY7D1,R0882-S0001_A68701,,TACGCTGC,,CTTAATAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,D1,D,1,FALSE,1,Day7, +1,CUB37DAY7D10,R0882-S0001_A68701,,ATGCGCAG,,ATAGCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,D10,D,10,FALSE,1,Day7, +1,CUB37DAY7D11,R0882-S0001_A68701,,ATGCGCAG,,TAAGGCTC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,D11,D,11,FALSE,1,Day7, +1,CUB37DAY7D12,R0882-S0001_A68701,,ATGCGCAG,,TCGCATAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,D12,D,12,FALSE,1,Day7, +1,CUB37DAY7D2,R0882-S0001_A68701,,TACGCTGC,,ATAGCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,D2,D,2,FALSE,1,Day7, +1,CUB37DAY7D3,R0882-S0001_A68701,,TACGCTGC,,TAAGGCTC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,D3,D,3,FALSE,1,Day7, +1,CUB37DAY7D4,R0882-S0001_A68701,,TACGCTGC,,TCGCATAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,D4,D,4,FALSE,1,Day7, +1,CUB37DAY7D5,R0882-S0001_A68701,,ATGCGCAG,,CTAGTCGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,D5,D,5,FALSE,1,Day7, +1,CUB37DAY7D6,R0882-S0001_A68701,,ATGCGCAG,,AGCTAGAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,D6,D,6,FALSE,1,Day7, +1,CUB37DAY7D7,R0882-S0001_A68701,,ATGCGCAG,,ACTCTAGG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,D7,D,7,FALSE,1,Day7, +1,CUB37DAY7D8,R0882-S0001_A68701,,ATGCGCAG,,TCTTACGC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,D8,D,8,FALSE,1,Day7, +1,CUB37DAY7D9,R0882-S0001_A68701,,ATGCGCAG,,CTTAATAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,D9,D,9,FALSE,1,Day7, +1,CUB37DAY7E1,R0882-S0001_A68701,,TAGCGCTC,,CTAGTCGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,E1,E,1,FALSE,1,Day7, +1,CUB37DAY7E10,R0882-S0001_A68701,,ACTGAGCG,,AGCTAGAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,E10,E,10,FALSE,1,Day7, +1,CUB37DAY7E11,R0882-S0001_A68701,,ACTGAGCG,,ACTCTAGG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,E11,E,11,FALSE,1,Day7, +1,CUB37DAY7E12,R0882-S0001_A68701,,ACTGAGCG,,TCTTACGC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,E12,E,12,FALSE,1,Day7, +1,CUB37DAY7E2,R0882-S0001_A68701,,TAGCGCTC,,AGCTAGAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,E2,E,2,FALSE,1,Day7, +1,CUB37DAY7E3,R0882-S0001_A68701,,TAGCGCTC,,ACTCTAGG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,E3,E,3,FALSE,1,Day7, +1,CUB37DAY7E4,R0882-S0001_A68701,,TAGCGCTC,,TCTTACGC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,E4,E,4,FALSE,1,Day7, +1,CUB37DAY7E5,R0882-S0001_A68701,,TAGCGCTC,,CTTAATAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,E5,E,5,FALSE,1,Day7, +1,CUB37DAY7E6,R0882-S0001_A68701,,TAGCGCTC,,ATAGCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,E6,E,6,FALSE,1,Day7, +1,CUB37DAY7E7,R0882-S0001_A68701,,TAGCGCTC,,TAAGGCTC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,E7,E,7,FALSE,1,Day7, +1,CUB37DAY7E8,R0882-S0001_A68701,,TAGCGCTC,,TCGCATAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,E8,E,8,FALSE,1,Day7, +1,CUB37DAY7E9,R0882-S0001_A68701,,ACTGAGCG,,CTAGTCGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,E9,E,9,FALSE,1,Day7, +1,CUB37DAY7F1,R0882-S0001_A68701,,ACTGAGCG,,CTTAATAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,F1,F,1,FALSE,1,Day7, +1,CUB37DAY7F10,R0882-S0001_A68701,,CCTAAGAC,,ATAGCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,F10,F,10,FALSE,1,Day7, +1,CUB37DAY7F11,R0882-S0001_A68701,,CCTAAGAC,,TAAGGCTC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,F11,F,11,FALSE,1,Day7, +1,CUB37DAY7F12,R0882-S0001_A68701,,CCTAAGAC,,TCGCATAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,F12,F,12,FALSE,1,Day7, +1,CUB37DAY7F2,R0882-S0001_A68701,,ACTGAGCG,,ATAGCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,F2,F,2,FALSE,1,Day7, +1,CUB37DAY7F3,R0882-S0001_A68701,,ACTGAGCG,,TAAGGCTC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,F3,F,3,FALSE,1,Day7, +1,CUB37DAY7F4,R0882-S0001_A68701,,ACTGAGCG,,TCGCATAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,F4,F,4,FALSE,1,Day7, +1,CUB37DAY7F5,R0882-S0001_A68701,,CCTAAGAC,,CTAGTCGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,F5,F,5,FALSE,1,Day7, +1,CUB37DAY7F6,R0882-S0001_A68701,,CCTAAGAC,,AGCTAGAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,F6,F,6,FALSE,1,Day7, +1,CUB37DAY7F7,R0882-S0001_A68701,,CCTAAGAC,,ACTCTAGG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,F7,F,7,FALSE,1,Day7, +1,CUB37DAY7F8,R0882-S0001_A68701,,CCTAAGAC,,TCTTACGC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,F8,F,8,FALSE,1,Day7, +1,CUB37DAY7F9,R0882-S0001_A68701,,CCTAAGAC,,CTTAATAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,F9,F,9,FALSE,1,Day7, +1,CUB37DAY7G1,R0882-S0001_A68701,,CGATCAGT,,CTAGTCGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,G1,G,1,FALSE,1,Day7, +1,CUB37DAY7G10,R0882-S0001_A68701,,TGCAGCTA,,AGCTAGAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,G10,G,10,FALSE,1,Day7, +1,CUB37DAY7G11,R0882-S0001_A68701,,TGCAGCTA,,ACTCTAGG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,G11,G,11,FALSE,1,Day7, +1,CUB37DAY7G12,R0882-S0001_A68701,,TGCAGCTA,,TCTTACGC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,G12,G,12,FALSE,1,Day7, +1,CUB37DAY7G2,R0882-S0001_A68701,,CGATCAGT,,AGCTAGAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,G2,G,2,FALSE,1,Day7, +1,CUB37DAY7G3,R0882-S0001_A68701,,CGATCAGT,,ACTCTAGG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,G3,G,3,FALSE,1,Day7, +1,CUB37DAY7G4,R0882-S0001_A68701,,CGATCAGT,,TCTTACGC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,G4,G,4,FALSE,1,Day7, +1,CUB37DAY7G5,R0882-S0001_A68701,,CGATCAGT,,CTTAATAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,G5,G,5,FALSE,1,Day7, +1,CUB37DAY7G6,R0882-S0001_A68701,,CGATCAGT,,ATAGCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,G6,G,6,FALSE,1,Day7, +1,CUB37DAY7G7,R0882-S0001_A68701,,CGATCAGT,,TAAGGCTC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,G7,G,7,FALSE,1,Day7, +1,CUB37DAY7G8,R0882-S0001_A68701,,CGATCAGT,,TCGCATAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,G8,G,8,FALSE,1,Day7, +1,CUB37DAY7G9,R0882-S0001_A68701,,TGCAGCTA,,CTAGTCGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,G9,G,9,TRUE,50,Day7, +1,CUB37DAY7H1,R0882-S0001_A68701,,TGCAGCTA,,CTTAATAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,H1,H,1,FALSE,1,Day7, +1,CUB37DAY7H10,R0882-S0001_A68701,,TCGACGTC,,ATAGCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,H10,H,10,FALSE,1,Day7, +1,CUB37DAY7H11,R0882-S0001_A68701,,TCGACGTC,,TAAGGCTC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,H11,H,11,FALSE,1,Day7, +1,CUB37DAY7H12,R0882-S0001_A68701,,TCGACGTC,,TCGCATAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,H12,H,12,FALSE,1,Day7, +1,CUB37DAY7H2,R0882-S0001_A68701,,TGCAGCTA,,ATAGCCTT,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,H2,H,2,FALSE,1,Day7, +1,CUB37DAY7H3,R0882-S0001_A68701,,TGCAGCTA,,TAAGGCTC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,H3,H,3,FALSE,1,Day7, +1,CUB37DAY7H4,R0882-S0001_A68701,,TGCAGCTA,,TCGCATAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,H4,H,4,FALSE,1,Day7, +1,CUB37DAY7H5,R0882-S0001_A68701,,TCGACGTC,,CTAGTCGA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,H5,H,5,FALSE,1,Day7, +1,CUB37DAY7H6,R0882-S0001_A68701,,TCGACGTC,,AGCTAGAA,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,H6,H,6,FALSE,1,Day7, +1,CUB37DAY7H7,R0882-S0001_A68701,,TCGACGTC,,ACTCTAGG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,H7,H,7,FALSE,1,Day7, +1,CUB37DAY7H8,R0882-S0001_A68701,,TCGACGTC,,TCTTACGC,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,H8,H,8,FALSE,1,Day7, +1,CUB37DAY7H9,R0882-S0001_A68701,,TCGACGTC,,CTTAATAG,PIP-2990,Illuminapremadelibrary,9913,Bos_taurus,,,Joint,CUB37DAY7,H9,H,9,FALSE,1,Day7, \ No newline at end of file diff --git a/sample_data/samples.csv b/sample_data/samples.csv new file mode 100644 index 0000000..77f021e --- /dev/null +++ b/sample_data/samples.csv @@ -0,0 +1,381 @@ +sampleId,R1,R2 +CUB35DAY0A1,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0A1_H3VY5DRX2_TAAGGCGA-ATAGAGAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0A1_H3VY5DRX2_TAAGGCGA-ATAGAGAG_L001_R2.fastq.gz +CUB35DAY0A10,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0A10_H3VY5DRX2_CGTACTAG-AGAGGATA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0A10_H3VY5DRX2_CGTACTAG-AGAGGATA_L001_R2.fastq.gz +CUB35DAY0A12,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0A12_H3VY5DRX2_CGTACTAG-TATGCAGT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0A12_H3VY5DRX2_CGTACTAG-TATGCAGT_L001_R2.fastq.gz +CUB35DAY0A2,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0A2_H3VY5DRX2_TAAGGCGA-AGAGGATA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0A2_H3VY5DRX2_TAAGGCGA-AGAGGATA_L001_R2.fastq.gz +CUB35DAY0A3,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0A3_H3VY5DRX2_TAAGGCGA-CTCCTTAC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0A3_H3VY5DRX2_TAAGGCGA-CTCCTTAC_L001_R2.fastq.gz +CUB35DAY0A4,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0A4_H3VY5DRX2_TAAGGCGA-TATGCAGT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0A4_H3VY5DRX2_TAAGGCGA-TATGCAGT_L001_R2.fastq.gz +CUB35DAY0A5,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0A5_H3VY5DRX2_TAAGGCGA-TACTCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0A5_H3VY5DRX2_TAAGGCGA-TACTCCTT_L001_R2.fastq.gz +CUB35DAY0A6,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0A6_H3VY5DRX2_TAAGGCGA-AGGCTTAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0A6_H3VY5DRX2_TAAGGCGA-AGGCTTAG_L001_R2.fastq.gz +CUB35DAY0A7,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0A7_H3VY5DRX2_TAAGGCGA-ATTAGACG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0A7_H3VY5DRX2_TAAGGCGA-ATTAGACG_L001_R2.fastq.gz +CUB35DAY0A8,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0A8_H3VY5DRX2_TAAGGCGA-CGGAGAGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0A8_H3VY5DRX2_TAAGGCGA-CGGAGAGA_L001_R2.fastq.gz +CUB35DAY0A9,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0A9_H3VY5DRX2_CGTACTAG-ATAGAGAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0A9_H3VY5DRX2_CGTACTAG-ATAGAGAG_L001_R2.fastq.gz +CUB35DAY0B1,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0B1_H3VY5DRX2_CGTACTAG-TACTCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0B1_H3VY5DRX2_CGTACTAG-TACTCCTT_L001_R2.fastq.gz +CUB35DAY0B10,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0B10_H3VY5DRX2_AGGCAGAA-AGGCTTAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0B10_H3VY5DRX2_AGGCAGAA-AGGCTTAG_L001_R2.fastq.gz +CUB35DAY0B11,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0B11_H3VY5DRX2_AGGCAGAA-ATTAGACG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0B11_H3VY5DRX2_AGGCAGAA-ATTAGACG_L001_R2.fastq.gz +CUB35DAY0B12,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0B12_H3VY5DRX2_AGGCAGAA-CGGAGAGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0B12_H3VY5DRX2_AGGCAGAA-CGGAGAGA_L001_R2.fastq.gz +CUB35DAY0B2,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0B2_H3VY5DRX2_CGTACTAG-AGGCTTAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0B2_H3VY5DRX2_CGTACTAG-AGGCTTAG_L001_R2.fastq.gz +CUB35DAY0B3,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0B3_H3VY5DRX2_CGTACTAG-ATTAGACG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0B3_H3VY5DRX2_CGTACTAG-ATTAGACG_L001_R2.fastq.gz +CUB35DAY0B4,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0B4_H3VY5DRX2_CGTACTAG-CGGAGAGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0B4_H3VY5DRX2_CGTACTAG-CGGAGAGA_L001_R2.fastq.gz +CUB35DAY0B5,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0B5_H3VY5DRX2_AGGCAGAA-ATAGAGAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0B5_H3VY5DRX2_AGGCAGAA-ATAGAGAG_L001_R2.fastq.gz +CUB35DAY0B6,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0B6_H3VY5DRX2_AGGCAGAA-AGAGGATA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0B6_H3VY5DRX2_AGGCAGAA-AGAGGATA_L001_R2.fastq.gz +CUB35DAY0B8,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0B8_H3VY5DRX2_AGGCAGAA-TATGCAGT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0B8_H3VY5DRX2_AGGCAGAA-TATGCAGT_L001_R2.fastq.gz +CUB35DAY0B9,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0B9_H3VY5DRX2_AGGCAGAA-TACTCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0B9_H3VY5DRX2_AGGCAGAA-TACTCCTT_L001_R2.fastq.gz +CUB35DAY0C1,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0C1_H3VY5DRX2_TCCTGAGC-ATAGAGAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0C1_H3VY5DRX2_TCCTGAGC-ATAGAGAG_L001_R2.fastq.gz +CUB35DAY0C10,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0C10_H3VY5DRX2_GGACTCCT-AGAGGATA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0C10_H3VY5DRX2_GGACTCCT-AGAGGATA_L001_R2.fastq.gz +CUB35DAY0C11,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0C11_H3VY5DRX2_GGACTCCT-CTCCTTAC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0C11_H3VY5DRX2_GGACTCCT-CTCCTTAC_L001_R2.fastq.gz +CUB35DAY0C12,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0C12_H3VY5DRX2_GGACTCCT-TATGCAGT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0C12_H3VY5DRX2_GGACTCCT-TATGCAGT_L001_R2.fastq.gz +CUB35DAY0C2,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0C2_H3VY5DRX2_TCCTGAGC-AGAGGATA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0C2_H3VY5DRX2_TCCTGAGC-AGAGGATA_L001_R2.fastq.gz +CUB35DAY0C4,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0C4_H3VY5DRX2_TCCTGAGC-TATGCAGT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0C4_H3VY5DRX2_TCCTGAGC-TATGCAGT_L001_R2.fastq.gz +CUB35DAY0C5,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0C5_H3VY5DRX2_TCCTGAGC-TACTCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0C5_H3VY5DRX2_TCCTGAGC-TACTCCTT_L001_R2.fastq.gz +CUB35DAY0C6,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0C6_H3VY5DRX2_TCCTGAGC-AGGCTTAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0C6_H3VY5DRX2_TCCTGAGC-AGGCTTAG_L001_R2.fastq.gz +CUB35DAY0C7,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0C7_H3VY5DRX2_TCCTGAGC-ATTAGACG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0C7_H3VY5DRX2_TCCTGAGC-ATTAGACG_L001_R2.fastq.gz +CUB35DAY0C8,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0C8_H3VY5DRX2_TCCTGAGC-CGGAGAGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0C8_H3VY5DRX2_TCCTGAGC-CGGAGAGA_L001_R2.fastq.gz +CUB35DAY0C9,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0C9_H3VY5DRX2_GGACTCCT-ATAGAGAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0C9_H3VY5DRX2_GGACTCCT-ATAGAGAG_L001_R2.fastq.gz +CUB35DAY0D1,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0D1_H3VY5DRX2_GGACTCCT-TACTCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0D1_H3VY5DRX2_GGACTCCT-TACTCCTT_L001_R2.fastq.gz +CUB35DAY0D10,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0D10_H3VY5DRX2_TAGGCATG-AGGCTTAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0D10_H3VY5DRX2_TAGGCATG-AGGCTTAG_L001_R2.fastq.gz +CUB35DAY0D11,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0D11_H3VY5DRX2_TAGGCATG-ATTAGACG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0D11_H3VY5DRX2_TAGGCATG-ATTAGACG_L001_R2.fastq.gz +CUB35DAY0D12,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0D12_H3VY5DRX2_TAGGCATG-CGGAGAGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0D12_H3VY5DRX2_TAGGCATG-CGGAGAGA_L001_R2.fastq.gz +CUB35DAY0D2,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0D2_H3VY5DRX2_GGACTCCT-AGGCTTAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0D2_H3VY5DRX2_GGACTCCT-AGGCTTAG_L001_R2.fastq.gz +CUB35DAY0D3,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0D3_H3VY5DRX2_GGACTCCT-ATTAGACG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0D3_H3VY5DRX2_GGACTCCT-ATTAGACG_L001_R2.fastq.gz +CUB35DAY0D4,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0D4_H3VY5DRX2_GGACTCCT-CGGAGAGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0D4_H3VY5DRX2_GGACTCCT-CGGAGAGA_L001_R2.fastq.gz +CUB35DAY0D5,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0D5_H3VY5DRX2_TAGGCATG-ATAGAGAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0D5_H3VY5DRX2_TAGGCATG-ATAGAGAG_L001_R2.fastq.gz +CUB35DAY0D6,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0D6_H3VY5DRX2_TAGGCATG-AGAGGATA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0D6_H3VY5DRX2_TAGGCATG-AGAGGATA_L001_R2.fastq.gz +CUB35DAY0D7,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0D7_H3VY5DRX2_TAGGCATG-CTCCTTAC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0D7_H3VY5DRX2_TAGGCATG-CTCCTTAC_L001_R2.fastq.gz +CUB35DAY0D8,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0D8_H3VY5DRX2_TAGGCATG-TATGCAGT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0D8_H3VY5DRX2_TAGGCATG-TATGCAGT_L001_R2.fastq.gz +CUB35DAY0D9,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0D9_H3VY5DRX2_TAGGCATG-TACTCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0D9_H3VY5DRX2_TAGGCATG-TACTCCTT_L001_R2.fastq.gz +CUB35DAY0E1,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0E1_H3VY5DRX2_CTCTCTAC-ATAGAGAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0E1_H3VY5DRX2_CTCTCTAC-ATAGAGAG_L001_R2.fastq.gz +CUB35DAY0E10,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0E10_H3VY5DRX2_CGAGGCTG-AGAGGATA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0E10_H3VY5DRX2_CGAGGCTG-AGAGGATA_L001_R2.fastq.gz +CUB35DAY0E11,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0E11_H3VY5DRX2_CGAGGCTG-CTCCTTAC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0E11_H3VY5DRX2_CGAGGCTG-CTCCTTAC_L001_R2.fastq.gz +CUB35DAY0E12,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0E12_H3VY5DRX2_CGAGGCTG-TATGCAGT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0E12_H3VY5DRX2_CGAGGCTG-TATGCAGT_L001_R2.fastq.gz +CUB35DAY0E2,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0E2_H3VY5DRX2_CTCTCTAC-AGAGGATA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0E2_H3VY5DRX2_CTCTCTAC-AGAGGATA_L001_R2.fastq.gz +CUB35DAY0E3,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0E3_H3VY5DRX2_CTCTCTAC-CTCCTTAC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0E3_H3VY5DRX2_CTCTCTAC-CTCCTTAC_L001_R2.fastq.gz +CUB35DAY0E4,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0E4_H3VY5DRX2_CTCTCTAC-TATGCAGT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0E4_H3VY5DRX2_CTCTCTAC-TATGCAGT_L001_R2.fastq.gz +CUB35DAY0E5,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0E5_H3VY5DRX2_CTCTCTAC-TACTCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0E5_H3VY5DRX2_CTCTCTAC-TACTCCTT_L001_R2.fastq.gz +CUB35DAY0E6,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0E6_H3VY5DRX2_CTCTCTAC-AGGCTTAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0E6_H3VY5DRX2_CTCTCTAC-AGGCTTAG_L001_R2.fastq.gz +CUB35DAY0E7,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0E7_H3VY5DRX2_CTCTCTAC-ATTAGACG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0E7_H3VY5DRX2_CTCTCTAC-ATTAGACG_L001_R2.fastq.gz +CUB35DAY0E8,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0E8_H3VY5DRX2_CTCTCTAC-CGGAGAGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0E8_H3VY5DRX2_CTCTCTAC-CGGAGAGA_L001_R2.fastq.gz +CUB35DAY0E9,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0E9_H3VY5DRX2_CGAGGCTG-ATAGAGAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0E9_H3VY5DRX2_CGAGGCTG-ATAGAGAG_L001_R2.fastq.gz +CUB35DAY0F1,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0F1_H3VY5DRX2_CGAGGCTG-TACTCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0F1_H3VY5DRX2_CGAGGCTG-TACTCCTT_L001_R2.fastq.gz +CUB35DAY0F10,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0F10_H3VY5DRX2_AAGAGGCA-AGGCTTAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0F10_H3VY5DRX2_AAGAGGCA-AGGCTTAG_L001_R2.fastq.gz +CUB35DAY0F11,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0F11_H3VY5DRX2_AAGAGGCA-ATTAGACG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0F11_H3VY5DRX2_AAGAGGCA-ATTAGACG_L001_R2.fastq.gz +CUB35DAY0F12,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0F12_H3VY5DRX2_AAGAGGCA-CGGAGAGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0F12_H3VY5DRX2_AAGAGGCA-CGGAGAGA_L001_R2.fastq.gz +CUB35DAY0F2,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0F2_H3VY5DRX2_CGAGGCTG-AGGCTTAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0F2_H3VY5DRX2_CGAGGCTG-AGGCTTAG_L001_R2.fastq.gz +CUB35DAY0F3,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0F3_H3VY5DRX2_CGAGGCTG-ATTAGACG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0F3_H3VY5DRX2_CGAGGCTG-ATTAGACG_L001_R2.fastq.gz +CUB35DAY0F4,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0F4_H3VY5DRX2_CGAGGCTG-CGGAGAGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0F4_H3VY5DRX2_CGAGGCTG-CGGAGAGA_L001_R2.fastq.gz +CUB35DAY0F5,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0F5_H3VY5DRX2_AAGAGGCA-ATAGAGAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0F5_H3VY5DRX2_AAGAGGCA-ATAGAGAG_L001_R2.fastq.gz +CUB35DAY0F6,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0F6_H3VY5DRX2_AAGAGGCA-AGAGGATA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0F6_H3VY5DRX2_AAGAGGCA-AGAGGATA_L001_R2.fastq.gz +CUB35DAY0F7,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0F7_H3VY5DRX2_AAGAGGCA-CTCCTTAC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0F7_H3VY5DRX2_AAGAGGCA-CTCCTTAC_L001_R2.fastq.gz +CUB35DAY0F8,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0F8_H3VY5DRX2_AAGAGGCA-TATGCAGT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0F8_H3VY5DRX2_AAGAGGCA-TATGCAGT_L001_R2.fastq.gz +CUB35DAY0F9,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0F9_H3VY5DRX2_AAGAGGCA-TACTCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0F9_H3VY5DRX2_AAGAGGCA-TACTCCTT_L001_R2.fastq.gz +CUB35DAY0G1,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0G1_H3VY5DRX2_GTAGAGGA-ATAGAGAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0G1_H3VY5DRX2_GTAGAGGA-ATAGAGAG_L001_R2.fastq.gz +CUB35DAY0G10,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0G10_H3VY5DRX2_GCTCATGA-AGAGGATA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0G10_H3VY5DRX2_GCTCATGA-AGAGGATA_L001_R2.fastq.gz +CUB35DAY0G11,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0G11_H3VY5DRX2_GCTCATGA-CTCCTTAC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0G11_H3VY5DRX2_GCTCATGA-CTCCTTAC_L001_R2.fastq.gz +CUB35DAY0G12,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0G12_H3VY5DRX2_GCTCATGA-TATGCAGT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0G12_H3VY5DRX2_GCTCATGA-TATGCAGT_L001_R2.fastq.gz +CUB35DAY0G2,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0G2_H3VY5DRX2_GTAGAGGA-AGAGGATA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0G2_H3VY5DRX2_GTAGAGGA-AGAGGATA_L001_R2.fastq.gz +CUB35DAY0G3,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0G3_H3VY5DRX2_GTAGAGGA-CTCCTTAC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0G3_H3VY5DRX2_GTAGAGGA-CTCCTTAC_L001_R2.fastq.gz +CUB35DAY0G4,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0G4_H3VY5DRX2_GTAGAGGA-TATGCAGT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0G4_H3VY5DRX2_GTAGAGGA-TATGCAGT_L001_R2.fastq.gz +CUB35DAY0G5,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0G5_H3VY5DRX2_GTAGAGGA-TACTCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0G5_H3VY5DRX2_GTAGAGGA-TACTCCTT_L001_R2.fastq.gz +CUB35DAY0G6,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0G6_H3VY5DRX2_GTAGAGGA-AGGCTTAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0G6_H3VY5DRX2_GTAGAGGA-AGGCTTAG_L001_R2.fastq.gz +CUB35DAY0G7,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0G7_H3VY5DRX2_GTAGAGGA-ATTAGACG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0G7_H3VY5DRX2_GTAGAGGA-ATTAGACG_L001_R2.fastq.gz +CUB35DAY0G8,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0G8_H3VY5DRX2_GTAGAGGA-CGGAGAGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0G8_H3VY5DRX2_GTAGAGGA-CGGAGAGA_L001_R2.fastq.gz +CUB35DAY0G9,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0G9_H3VY5DRX2_GCTCATGA-ATAGAGAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0G9_H3VY5DRX2_GCTCATGA-ATAGAGAG_L001_R2.fastq.gz +CUB35DAY0H1,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0H1_H3VY5DRX2_GCTCATGA-TACTCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0H1_H3VY5DRX2_GCTCATGA-TACTCCTT_L001_R2.fastq.gz +CUB35DAY0H10,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0H10_H3VY5DRX2_ATCTCAGG-AGGCTTAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0H10_H3VY5DRX2_ATCTCAGG-AGGCTTAG_L001_R2.fastq.gz +CUB35DAY0H11,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0H11_H3VY5DRX2_ATCTCAGG-ATTAGACG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0H11_H3VY5DRX2_ATCTCAGG-ATTAGACG_L001_R2.fastq.gz +CUB35DAY0H12,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0H12_H3VY5DRX2_ATCTCAGG-CGGAGAGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0H12_H3VY5DRX2_ATCTCAGG-CGGAGAGA_L001_R2.fastq.gz +CUB35DAY0H2,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0H2_H3VY5DRX2_GCTCATGA-AGGCTTAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0H2_H3VY5DRX2_GCTCATGA-AGGCTTAG_L001_R2.fastq.gz +CUB35DAY0H3,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0H3_H3VY5DRX2_GCTCATGA-ATTAGACG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0H3_H3VY5DRX2_GCTCATGA-ATTAGACG_L001_R2.fastq.gz +CUB35DAY0H4,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0H4_H3VY5DRX2_GCTCATGA-CGGAGAGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0H4_H3VY5DRX2_GCTCATGA-CGGAGAGA_L001_R2.fastq.gz +CUB35DAY0H5,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0H5_H3VY5DRX2_ATCTCAGG-ATAGAGAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0H5_H3VY5DRX2_ATCTCAGG-ATAGAGAG_L001_R2.fastq.gz +CUB35DAY0H6,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0H6_H3VY5DRX2_ATCTCAGG-AGAGGATA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0H6_H3VY5DRX2_ATCTCAGG-AGAGGATA_L001_R2.fastq.gz +CUB35DAY0H7,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0H7_H3VY5DRX2_ATCTCAGG-CTCCTTAC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0H7_H3VY5DRX2_ATCTCAGG-CTCCTTAC_L001_R2.fastq.gz +CUB35DAY0H8,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0H8_H3VY5DRX2_ATCTCAGG-TATGCAGT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0H8_H3VY5DRX2_ATCTCAGG-TATGCAGT_L001_R2.fastq.gz +CUB35DAY0H9,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0H9_H3VY5DRX2_ATCTCAGG-TACTCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY0_R0882-S0001_A68701_CUB35DAY0H9_H3VY5DRX2_ATCTCAGG-TACTCCTT_L001_R2.fastq.gz +CUB35DAY7A1,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7A1_H3VY5DRX2_TAAGGCGA-CTAGTCGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7A1_H3VY5DRX2_TAAGGCGA-CTAGTCGA_L001_R2.fastq.gz +CUB35DAY7A10,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7A10_H3VY5DRX2_CGTACTAG-AGCTAGAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7A10_H3VY5DRX2_CGTACTAG-AGCTAGAA_L001_R2.fastq.gz +CUB35DAY7A11,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7A11_H3VY5DRX2_CGTACTAG-ACTCTAGG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7A11_H3VY5DRX2_CGTACTAG-ACTCTAGG_L001_R2.fastq.gz +CUB35DAY7A12,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7A12_H3VY5DRX2_CGTACTAG-TCTTACGC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7A12_H3VY5DRX2_CGTACTAG-TCTTACGC_L001_R2.fastq.gz +CUB35DAY7A2,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7A2_H3VY5DRX2_TAAGGCGA-AGCTAGAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7A2_H3VY5DRX2_TAAGGCGA-AGCTAGAA_L001_R2.fastq.gz +CUB35DAY7A3,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7A3_H3VY5DRX2_TAAGGCGA-ACTCTAGG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7A3_H3VY5DRX2_TAAGGCGA-ACTCTAGG_L001_R2.fastq.gz +CUB35DAY7A4,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7A4_H3VY5DRX2_TAAGGCGA-TCTTACGC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7A4_H3VY5DRX2_TAAGGCGA-TCTTACGC_L001_R2.fastq.gz +CUB35DAY7A5,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7A5_H3VY5DRX2_TAAGGCGA-CTTAATAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7A5_H3VY5DRX2_TAAGGCGA-CTTAATAG_L001_R2.fastq.gz +CUB35DAY7A6,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7A6_H3VY5DRX2_TAAGGCGA-ATAGCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7A6_H3VY5DRX2_TAAGGCGA-ATAGCCTT_L001_R2.fastq.gz +CUB35DAY7A7,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7A7_H3VY5DRX2_TAAGGCGA-TAAGGCTC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7A7_H3VY5DRX2_TAAGGCGA-TAAGGCTC_L001_R2.fastq.gz +CUB35DAY7A8,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7A8_H3VY5DRX2_TAAGGCGA-TCGCATAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7A8_H3VY5DRX2_TAAGGCGA-TCGCATAA_L001_R2.fastq.gz +CUB35DAY7A9,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7A9_H3VY5DRX2_CGTACTAG-CTAGTCGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7A9_H3VY5DRX2_CGTACTAG-CTAGTCGA_L001_R2.fastq.gz +CUB35DAY7B1,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7B1_H3VY5DRX2_CGTACTAG-CTTAATAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7B1_H3VY5DRX2_CGTACTAG-CTTAATAG_L001_R2.fastq.gz +CUB35DAY7B10,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7B10_H3VY5DRX2_AGGCAGAA-ATAGCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7B10_H3VY5DRX2_AGGCAGAA-ATAGCCTT_L001_R2.fastq.gz +CUB35DAY7B11,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7B11_H3VY5DRX2_AGGCAGAA-TAAGGCTC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7B11_H3VY5DRX2_AGGCAGAA-TAAGGCTC_L001_R2.fastq.gz +CUB35DAY7B12,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7B12_H3VY5DRX2_AGGCAGAA-TCGCATAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7B12_H3VY5DRX2_AGGCAGAA-TCGCATAA_L001_R2.fastq.gz +CUB35DAY7B2,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7B2_H3VY5DRX2_CGTACTAG-ATAGCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7B2_H3VY5DRX2_CGTACTAG-ATAGCCTT_L001_R2.fastq.gz +CUB35DAY7B3,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7B3_H3VY5DRX2_CGTACTAG-TAAGGCTC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7B3_H3VY5DRX2_CGTACTAG-TAAGGCTC_L001_R2.fastq.gz +CUB35DAY7B4,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7B4_H3VY5DRX2_CGTACTAG-TCGCATAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7B4_H3VY5DRX2_CGTACTAG-TCGCATAA_L001_R2.fastq.gz +CUB35DAY7B5,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7B5_H3VY5DRX2_AGGCAGAA-CTAGTCGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7B5_H3VY5DRX2_AGGCAGAA-CTAGTCGA_L001_R2.fastq.gz +CUB35DAY7B6,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7B6_H3VY5DRX2_AGGCAGAA-AGCTAGAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7B6_H3VY5DRX2_AGGCAGAA-AGCTAGAA_L001_R2.fastq.gz +CUB35DAY7B7,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7B7_H3VY5DRX2_AGGCAGAA-ACTCTAGG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7B7_H3VY5DRX2_AGGCAGAA-ACTCTAGG_L001_R2.fastq.gz +CUB35DAY7B8,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7B8_H3VY5DRX2_AGGCAGAA-TCTTACGC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7B8_H3VY5DRX2_AGGCAGAA-TCTTACGC_L001_R2.fastq.gz +CUB35DAY7B9,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7B9_H3VY5DRX2_AGGCAGAA-CTTAATAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7B9_H3VY5DRX2_AGGCAGAA-CTTAATAG_L001_R2.fastq.gz +CUB35DAY7C1,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7C1_H3VY5DRX2_TCCTGAGC-CTAGTCGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7C1_H3VY5DRX2_TCCTGAGC-CTAGTCGA_L001_R2.fastq.gz +CUB35DAY7C10,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7C10_H3VY5DRX2_GGACTCCT-AGCTAGAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7C10_H3VY5DRX2_GGACTCCT-AGCTAGAA_L001_R2.fastq.gz +CUB35DAY7C11,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7C11_H3VY5DRX2_GGACTCCT-ACTCTAGG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7C11_H3VY5DRX2_GGACTCCT-ACTCTAGG_L001_R2.fastq.gz +CUB35DAY7C12,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7C12_H3VY5DRX2_GGACTCCT-TCTTACGC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7C12_H3VY5DRX2_GGACTCCT-TCTTACGC_L001_R2.fastq.gz +CUB35DAY7C2,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7C2_H3VY5DRX2_TCCTGAGC-AGCTAGAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7C2_H3VY5DRX2_TCCTGAGC-AGCTAGAA_L001_R2.fastq.gz +CUB35DAY7C3,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7C3_H3VY5DRX2_TCCTGAGC-ACTCTAGG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7C3_H3VY5DRX2_TCCTGAGC-ACTCTAGG_L001_R2.fastq.gz +CUB35DAY7C4,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7C4_H3VY5DRX2_TCCTGAGC-TCTTACGC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7C4_H3VY5DRX2_TCCTGAGC-TCTTACGC_L001_R2.fastq.gz +CUB35DAY7C5,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7C5_H3VY5DRX2_TCCTGAGC-CTTAATAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7C5_H3VY5DRX2_TCCTGAGC-CTTAATAG_L001_R2.fastq.gz +CUB35DAY7C6,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7C6_H3VY5DRX2_TCCTGAGC-ATAGCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7C6_H3VY5DRX2_TCCTGAGC-ATAGCCTT_L001_R2.fastq.gz +CUB35DAY7C7,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7C7_H3VY5DRX2_TCCTGAGC-TAAGGCTC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7C7_H3VY5DRX2_TCCTGAGC-TAAGGCTC_L001_R2.fastq.gz +CUB35DAY7C8,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7C8_H3VY5DRX2_TCCTGAGC-TCGCATAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7C8_H3VY5DRX2_TCCTGAGC-TCGCATAA_L001_R2.fastq.gz +CUB35DAY7C9,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7C9_H3VY5DRX2_GGACTCCT-CTAGTCGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7C9_H3VY5DRX2_GGACTCCT-CTAGTCGA_L001_R2.fastq.gz +CUB35DAY7D1,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7D1_H3VY5DRX2_GGACTCCT-CTTAATAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7D1_H3VY5DRX2_GGACTCCT-CTTAATAG_L001_R2.fastq.gz +CUB35DAY7D10,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7D10_H3VY5DRX2_TAGGCATG-ATAGCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7D10_H3VY5DRX2_TAGGCATG-ATAGCCTT_L001_R2.fastq.gz +CUB35DAY7D11,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7D11_H3VY5DRX2_TAGGCATG-TAAGGCTC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7D11_H3VY5DRX2_TAGGCATG-TAAGGCTC_L001_R2.fastq.gz +CUB35DAY7D12,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7D12_H3VY5DRX2_TAGGCATG-TCGCATAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7D12_H3VY5DRX2_TAGGCATG-TCGCATAA_L001_R2.fastq.gz +CUB35DAY7D2,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7D2_H3VY5DRX2_GGACTCCT-ATAGCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7D2_H3VY5DRX2_GGACTCCT-ATAGCCTT_L001_R2.fastq.gz +CUB35DAY7D3,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7D3_H3VY5DRX2_GGACTCCT-TAAGGCTC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7D3_H3VY5DRX2_GGACTCCT-TAAGGCTC_L001_R2.fastq.gz +CUB35DAY7D4,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7D4_H3VY5DRX2_GGACTCCT-TCGCATAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7D4_H3VY5DRX2_GGACTCCT-TCGCATAA_L001_R2.fastq.gz +CUB35DAY7D5,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7D5_H3VY5DRX2_TAGGCATG-CTAGTCGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7D5_H3VY5DRX2_TAGGCATG-CTAGTCGA_L001_R2.fastq.gz +CUB35DAY7D6,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7D6_H3VY5DRX2_TAGGCATG-AGCTAGAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7D6_H3VY5DRX2_TAGGCATG-AGCTAGAA_L001_R2.fastq.gz +CUB35DAY7D7,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7D7_H3VY5DRX2_TAGGCATG-ACTCTAGG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7D7_H3VY5DRX2_TAGGCATG-ACTCTAGG_L001_R2.fastq.gz +CUB35DAY7D8,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7D8_H3VY5DRX2_TAGGCATG-TCTTACGC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7D8_H3VY5DRX2_TAGGCATG-TCTTACGC_L001_R2.fastq.gz +CUB35DAY7D9,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7D9_H3VY5DRX2_TAGGCATG-CTTAATAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7D9_H3VY5DRX2_TAGGCATG-CTTAATAG_L001_R2.fastq.gz +CUB35DAY7E1,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7E1_H3VY5DRX2_CTCTCTAC-CTAGTCGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7E1_H3VY5DRX2_CTCTCTAC-CTAGTCGA_L001_R2.fastq.gz +CUB35DAY7E10,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7E10_H3VY5DRX2_CGAGGCTG-AGCTAGAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7E10_H3VY5DRX2_CGAGGCTG-AGCTAGAA_L001_R2.fastq.gz +CUB35DAY7E11,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7E11_H3VY5DRX2_CGAGGCTG-ACTCTAGG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7E11_H3VY5DRX2_CGAGGCTG-ACTCTAGG_L001_R2.fastq.gz +CUB35DAY7E12,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7E12_H3VY5DRX2_CGAGGCTG-TCTTACGC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7E12_H3VY5DRX2_CGAGGCTG-TCTTACGC_L001_R2.fastq.gz +CUB35DAY7E2,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7E2_H3VY5DRX2_CTCTCTAC-AGCTAGAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7E2_H3VY5DRX2_CTCTCTAC-AGCTAGAA_L001_R2.fastq.gz +CUB35DAY7E3,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7E3_H3VY5DRX2_CTCTCTAC-ACTCTAGG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7E3_H3VY5DRX2_CTCTCTAC-ACTCTAGG_L001_R2.fastq.gz +CUB35DAY7E4,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7E4_H3VY5DRX2_CTCTCTAC-TCTTACGC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7E4_H3VY5DRX2_CTCTCTAC-TCTTACGC_L001_R2.fastq.gz +CUB35DAY7E5,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7E5_H3VY5DRX2_CTCTCTAC-CTTAATAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7E5_H3VY5DRX2_CTCTCTAC-CTTAATAG_L001_R2.fastq.gz +CUB35DAY7E6,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7E6_H3VY5DRX2_CTCTCTAC-ATAGCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7E6_H3VY5DRX2_CTCTCTAC-ATAGCCTT_L001_R2.fastq.gz +CUB35DAY7E7,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7E7_H3VY5DRX2_CTCTCTAC-TAAGGCTC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7E7_H3VY5DRX2_CTCTCTAC-TAAGGCTC_L001_R2.fastq.gz +CUB35DAY7E8,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7E8_H3VY5DRX2_CTCTCTAC-TCGCATAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7E8_H3VY5DRX2_CTCTCTAC-TCGCATAA_L001_R2.fastq.gz +CUB35DAY7E9,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7E9_H3VY5DRX2_CGAGGCTG-CTAGTCGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7E9_H3VY5DRX2_CGAGGCTG-CTAGTCGA_L001_R2.fastq.gz +CUB35DAY7F1,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7F1_H3VY5DRX2_CGAGGCTG-CTTAATAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7F1_H3VY5DRX2_CGAGGCTG-CTTAATAG_L001_R2.fastq.gz +CUB35DAY7F10,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7F10_H3VY5DRX2_AAGAGGCA-ATAGCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7F10_H3VY5DRX2_AAGAGGCA-ATAGCCTT_L001_R2.fastq.gz +CUB35DAY7F11,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7F11_H3VY5DRX2_AAGAGGCA-TAAGGCTC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7F11_H3VY5DRX2_AAGAGGCA-TAAGGCTC_L001_R2.fastq.gz +CUB35DAY7F12,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7F12_H3VY5DRX2_AAGAGGCA-TCGCATAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7F12_H3VY5DRX2_AAGAGGCA-TCGCATAA_L001_R2.fastq.gz +CUB35DAY7F2,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7F2_H3VY5DRX2_CGAGGCTG-ATAGCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7F2_H3VY5DRX2_CGAGGCTG-ATAGCCTT_L001_R2.fastq.gz +CUB35DAY7F3,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7F3_H3VY5DRX2_CGAGGCTG-TAAGGCTC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7F3_H3VY5DRX2_CGAGGCTG-TAAGGCTC_L001_R2.fastq.gz +CUB35DAY7F4,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7F4_H3VY5DRX2_CGAGGCTG-TCGCATAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7F4_H3VY5DRX2_CGAGGCTG-TCGCATAA_L001_R2.fastq.gz +CUB35DAY7F5,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7F5_H3VY5DRX2_AAGAGGCA-CTAGTCGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7F5_H3VY5DRX2_AAGAGGCA-CTAGTCGA_L001_R2.fastq.gz +CUB35DAY7F6,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7F6_H3VY5DRX2_AAGAGGCA-AGCTAGAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7F6_H3VY5DRX2_AAGAGGCA-AGCTAGAA_L001_R2.fastq.gz +CUB35DAY7F7,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7F7_H3VY5DRX2_AAGAGGCA-ACTCTAGG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7F7_H3VY5DRX2_AAGAGGCA-ACTCTAGG_L001_R2.fastq.gz +CUB35DAY7F8,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7F8_H3VY5DRX2_AAGAGGCA-TCTTACGC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7F8_H3VY5DRX2_AAGAGGCA-TCTTACGC_L001_R2.fastq.gz +CUB35DAY7F9,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7F9_H3VY5DRX2_AAGAGGCA-CTTAATAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7F9_H3VY5DRX2_AAGAGGCA-CTTAATAG_L001_R2.fastq.gz +CUB35DAY7G1,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7G1_H3VY5DRX2_GTAGAGGA-CTAGTCGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7G1_H3VY5DRX2_GTAGAGGA-CTAGTCGA_L001_R2.fastq.gz +CUB35DAY7G10,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7G10_H3VY5DRX2_GCTCATGA-AGCTAGAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7G10_H3VY5DRX2_GCTCATGA-AGCTAGAA_L001_R2.fastq.gz +CUB35DAY7G11,, +CUB35DAY7G12,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7G12_H3VY5DRX2_GCTCATGA-TCTTACGC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7G12_H3VY5DRX2_GCTCATGA-TCTTACGC_L001_R2.fastq.gz +CUB35DAY7G2,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7G2_H3VY5DRX2_GTAGAGGA-AGCTAGAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7G2_H3VY5DRX2_GTAGAGGA-AGCTAGAA_L001_R2.fastq.gz +CUB35DAY7G3,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7G3_H3VY5DRX2_GTAGAGGA-ACTCTAGG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7G3_H3VY5DRX2_GTAGAGGA-ACTCTAGG_L001_R2.fastq.gz +CUB35DAY7G4,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7G4_H3VY5DRX2_GTAGAGGA-TCTTACGC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7G4_H3VY5DRX2_GTAGAGGA-TCTTACGC_L001_R2.fastq.gz +CUB35DAY7G5,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7G5_H3VY5DRX2_GTAGAGGA-CTTAATAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7G5_H3VY5DRX2_GTAGAGGA-CTTAATAG_L001_R2.fastq.gz +CUB35DAY7G6,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7G6_H3VY5DRX2_GTAGAGGA-ATAGCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7G6_H3VY5DRX2_GTAGAGGA-ATAGCCTT_L001_R2.fastq.gz +CUB35DAY7G7,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7G7_H3VY5DRX2_GTAGAGGA-TAAGGCTC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7G7_H3VY5DRX2_GTAGAGGA-TAAGGCTC_L001_R2.fastq.gz +CUB35DAY7G8,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7G8_H3VY5DRX2_GTAGAGGA-TCGCATAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7G8_H3VY5DRX2_GTAGAGGA-TCGCATAA_L001_R2.fastq.gz +CUB35DAY7G9,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7G9_H3VY5DRX2_GCTCATGA-CTAGTCGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7G9_H3VY5DRX2_GCTCATGA-CTAGTCGA_L001_R2.fastq.gz +CUB35DAY7H1,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7H1_H3VY5DRX2_GCTCATGA-CTTAATAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7H1_H3VY5DRX2_GCTCATGA-CTTAATAG_L001_R2.fastq.gz +CUB35DAY7H10,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7H10_H3VY5DRX2_ATCTCAGG-ATAGCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7H10_H3VY5DRX2_ATCTCAGG-ATAGCCTT_L001_R2.fastq.gz +CUB35DAY7H11,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7H11_H3VY5DRX2_ATCTCAGG-TAAGGCTC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7H11_H3VY5DRX2_ATCTCAGG-TAAGGCTC_L001_R2.fastq.gz +CUB35DAY7H12,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7H12_H3VY5DRX2_ATCTCAGG-TCGCATAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7H12_H3VY5DRX2_ATCTCAGG-TCGCATAA_L001_R2.fastq.gz +CUB35DAY7H2,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7H2_H3VY5DRX2_GCTCATGA-ATAGCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7H2_H3VY5DRX2_GCTCATGA-ATAGCCTT_L001_R2.fastq.gz +CUB35DAY7H3,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7H3_H3VY5DRX2_GCTCATGA-TAAGGCTC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7H3_H3VY5DRX2_GCTCATGA-TAAGGCTC_L001_R2.fastq.gz +CUB35DAY7H4,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7H4_H3VY5DRX2_GCTCATGA-TCGCATAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7H4_H3VY5DRX2_GCTCATGA-TCGCATAA_L001_R2.fastq.gz +CUB35DAY7H5,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7H5_H3VY5DRX2_ATCTCAGG-CTAGTCGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7H5_H3VY5DRX2_ATCTCAGG-CTAGTCGA_L001_R2.fastq.gz +CUB35DAY7H6,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7H6_H3VY5DRX2_ATCTCAGG-AGCTAGAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7H6_H3VY5DRX2_ATCTCAGG-AGCTAGAA_L001_R2.fastq.gz +CUB35DAY7H7,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7H7_H3VY5DRX2_ATCTCAGG-ACTCTAGG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7H7_H3VY5DRX2_ATCTCAGG-ACTCTAGG_L001_R2.fastq.gz +CUB35DAY7H8,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7H8_H3VY5DRX2_ATCTCAGG-TCTTACGC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7H8_H3VY5DRX2_ATCTCAGG-TCTTACGC_L001_R2.fastq.gz +CUB35DAY7H9,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7H9_H3VY5DRX2_ATCTCAGG-CTTAATAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB35DAY7_R0882-S0001_A68701_CUB35DAY7H9_H3VY5DRX2_ATCTCAGG-CTTAATAG_L001_R2.fastq.gz +CUB37DAY0A1,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0A1_H3VY5DRX2_ACTCGCTA-ATAGAGAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0A1_H3VY5DRX2_ACTCGCTA-ATAGAGAG_L001_R2.fastq.gz +CUB37DAY0A10,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0A10_H3VY5DRX2_GGAGCTAC-AGAGGATA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0A10_H3VY5DRX2_GGAGCTAC-AGAGGATA_L001_R2.fastq.gz +CUB37DAY0A11,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0A11_H3VY5DRX2_GGAGCTAC-CTCCTTAC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0A11_H3VY5DRX2_GGAGCTAC-CTCCTTAC_L001_R2.fastq.gz +CUB37DAY0A12,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0A12_H3VY5DRX2_GGAGCTAC-TATGCAGT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0A12_H3VY5DRX2_GGAGCTAC-TATGCAGT_L001_R2.fastq.gz +CUB37DAY0A2,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0A2_H3VY5DRX2_ACTCGCTA-AGAGGATA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0A2_H3VY5DRX2_ACTCGCTA-AGAGGATA_L001_R2.fastq.gz +CUB37DAY0A3,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0A3_H3VY5DRX2_ACTCGCTA-CTCCTTAC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0A3_H3VY5DRX2_ACTCGCTA-CTCCTTAC_L001_R2.fastq.gz +CUB37DAY0A4,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0A4_H3VY5DRX2_ACTCGCTA-TATGCAGT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0A4_H3VY5DRX2_ACTCGCTA-TATGCAGT_L001_R2.fastq.gz +CUB37DAY0A5,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0A5_H3VY5DRX2_ACTCGCTA-TACTCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0A5_H3VY5DRX2_ACTCGCTA-TACTCCTT_L001_R2.fastq.gz +CUB37DAY0A6,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0A6_H3VY5DRX2_ACTCGCTA-AGGCTTAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0A6_H3VY5DRX2_ACTCGCTA-AGGCTTAG_L001_R2.fastq.gz +CUB37DAY0A7,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0A7_H3VY5DRX2_ACTCGCTA-ATTAGACG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0A7_H3VY5DRX2_ACTCGCTA-ATTAGACG_L001_R2.fastq.gz +CUB37DAY0A8,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0A8_H3VY5DRX2_ACTCGCTA-CGGAGAGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0A8_H3VY5DRX2_ACTCGCTA-CGGAGAGA_L001_R2.fastq.gz +CUB37DAY0A9,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0A9_H3VY5DRX2_GGAGCTAC-ATAGAGAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0A9_H3VY5DRX2_GGAGCTAC-ATAGAGAG_L001_R2.fastq.gz +CUB37DAY0B1,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0B1_H3VY5DRX2_GGAGCTAC-TACTCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0B1_H3VY5DRX2_GGAGCTAC-TACTCCTT_L001_R2.fastq.gz +CUB37DAY0B10,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0B10_H3VY5DRX2_GCGTAGTA-AGGCTTAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0B10_H3VY5DRX2_GCGTAGTA-AGGCTTAG_L001_R2.fastq.gz +CUB37DAY0B11,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0B11_H3VY5DRX2_GCGTAGTA-ATTAGACG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0B11_H3VY5DRX2_GCGTAGTA-ATTAGACG_L001_R2.fastq.gz +CUB37DAY0B12,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0B12_H3VY5DRX2_GCGTAGTA-CGGAGAGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0B12_H3VY5DRX2_GCGTAGTA-CGGAGAGA_L001_R2.fastq.gz +CUB37DAY0B2,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0B2_H3VY5DRX2_GGAGCTAC-AGGCTTAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0B2_H3VY5DRX2_GGAGCTAC-AGGCTTAG_L001_R2.fastq.gz +CUB37DAY0B3,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0B3_H3VY5DRX2_GGAGCTAC-ATTAGACG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0B3_H3VY5DRX2_GGAGCTAC-ATTAGACG_L001_R2.fastq.gz +CUB37DAY0B4,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0B4_H3VY5DRX2_GGAGCTAC-CGGAGAGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0B4_H3VY5DRX2_GGAGCTAC-CGGAGAGA_L001_R2.fastq.gz +CUB37DAY0B5,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0B5_H3VY5DRX2_GCGTAGTA-ATAGAGAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0B5_H3VY5DRX2_GCGTAGTA-ATAGAGAG_L001_R2.fastq.gz +CUB37DAY0B6,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0B6_H3VY5DRX2_GCGTAGTA-AGAGGATA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0B6_H3VY5DRX2_GCGTAGTA-AGAGGATA_L001_R2.fastq.gz +CUB37DAY0B7,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0B7_H3VY5DRX2_GCGTAGTA-CTCCTTAC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0B7_H3VY5DRX2_GCGTAGTA-CTCCTTAC_L001_R2.fastq.gz +CUB37DAY0B8,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0B8_H3VY5DRX2_GCGTAGTA-TATGCAGT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0B8_H3VY5DRX2_GCGTAGTA-TATGCAGT_L001_R2.fastq.gz +CUB37DAY0B9,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0B9_H3VY5DRX2_GCGTAGTA-TACTCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0B9_H3VY5DRX2_GCGTAGTA-TACTCCTT_L001_R2.fastq.gz +CUB37DAY0C1,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0C1_H3VY5DRX2_CGGAGCCT-ATAGAGAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0C1_H3VY5DRX2_CGGAGCCT-ATAGAGAG_L001_R2.fastq.gz +CUB37DAY0C10,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0C10_H3VY5DRX2_TACGCTGC-AGAGGATA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0C10_H3VY5DRX2_TACGCTGC-AGAGGATA_L001_R2.fastq.gz +CUB37DAY0C11,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0C11_H3VY5DRX2_TACGCTGC-CTCCTTAC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0C11_H3VY5DRX2_TACGCTGC-CTCCTTAC_L001_R2.fastq.gz +CUB37DAY0C12,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0C12_H3VY5DRX2_TACGCTGC-TATGCAGT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0C12_H3VY5DRX2_TACGCTGC-TATGCAGT_L001_R2.fastq.gz +CUB37DAY0C2,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0C2_H3VY5DRX2_CGGAGCCT-AGAGGATA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0C2_H3VY5DRX2_CGGAGCCT-AGAGGATA_L001_R2.fastq.gz +CUB37DAY0C3,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0C3_H3VY5DRX2_CGGAGCCT-CTCCTTAC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0C3_H3VY5DRX2_CGGAGCCT-CTCCTTAC_L001_R2.fastq.gz +CUB37DAY0C4,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0C4_H3VY5DRX2_CGGAGCCT-TATGCAGT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0C4_H3VY5DRX2_CGGAGCCT-TATGCAGT_L001_R2.fastq.gz +CUB37DAY0C5,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0C5_H3VY5DRX2_CGGAGCCT-TACTCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0C5_H3VY5DRX2_CGGAGCCT-TACTCCTT_L001_R2.fastq.gz +CUB37DAY0C6,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0C6_H3VY5DRX2_CGGAGCCT-AGGCTTAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0C6_H3VY5DRX2_CGGAGCCT-AGGCTTAG_L001_R2.fastq.gz +CUB37DAY0C7,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0C7_H3VY5DRX2_CGGAGCCT-ATTAGACG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0C7_H3VY5DRX2_CGGAGCCT-ATTAGACG_L001_R2.fastq.gz +CUB37DAY0C8,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0C8_H3VY5DRX2_CGGAGCCT-CGGAGAGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0C8_H3VY5DRX2_CGGAGCCT-CGGAGAGA_L001_R2.fastq.gz +CUB37DAY0C9,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0C9_H3VY5DRX2_TACGCTGC-ATAGAGAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0C9_H3VY5DRX2_TACGCTGC-ATAGAGAG_L001_R2.fastq.gz +CUB37DAY0D1,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0D1_H3VY5DRX2_TACGCTGC-TACTCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0D1_H3VY5DRX2_TACGCTGC-TACTCCTT_L001_R2.fastq.gz +CUB37DAY0D10,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0D10_H3VY5DRX2_ATGCGCAG-AGGCTTAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0D10_H3VY5DRX2_ATGCGCAG-AGGCTTAG_L001_R2.fastq.gz +CUB37DAY0D11,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0D11_H3VY5DRX2_ATGCGCAG-ATTAGACG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0D11_H3VY5DRX2_ATGCGCAG-ATTAGACG_L001_R2.fastq.gz +CUB37DAY0D12,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0D12_H3VY5DRX2_ATGCGCAG-CGGAGAGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0D12_H3VY5DRX2_ATGCGCAG-CGGAGAGA_L001_R2.fastq.gz +CUB37DAY0D2,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0D2_H3VY5DRX2_TACGCTGC-AGGCTTAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0D2_H3VY5DRX2_TACGCTGC-AGGCTTAG_L001_R2.fastq.gz +CUB37DAY0D3,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0D3_H3VY5DRX2_TACGCTGC-ATTAGACG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0D3_H3VY5DRX2_TACGCTGC-ATTAGACG_L001_R2.fastq.gz +CUB37DAY0D4,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0D4_H3VY5DRX2_TACGCTGC-CGGAGAGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0D4_H3VY5DRX2_TACGCTGC-CGGAGAGA_L001_R2.fastq.gz +CUB37DAY0D5,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0D5_H3VY5DRX2_ATGCGCAG-ATAGAGAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0D5_H3VY5DRX2_ATGCGCAG-ATAGAGAG_L001_R2.fastq.gz +CUB37DAY0D6,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0D6_H3VY5DRX2_ATGCGCAG-AGAGGATA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0D6_H3VY5DRX2_ATGCGCAG-AGAGGATA_L001_R2.fastq.gz +CUB37DAY0D7,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0D7_H3VY5DRX2_ATGCGCAG-CTCCTTAC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0D7_H3VY5DRX2_ATGCGCAG-CTCCTTAC_L001_R2.fastq.gz +CUB37DAY0D8,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0D8_H3VY5DRX2_ATGCGCAG-TATGCAGT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0D8_H3VY5DRX2_ATGCGCAG-TATGCAGT_L001_R2.fastq.gz +CUB37DAY0D9,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0D9_H3VY5DRX2_ATGCGCAG-TACTCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0D9_H3VY5DRX2_ATGCGCAG-TACTCCTT_L001_R2.fastq.gz +CUB37DAY0E1,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0E1_H3VY5DRX2_TAGCGCTC-ATAGAGAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0E1_H3VY5DRX2_TAGCGCTC-ATAGAGAG_L001_R2.fastq.gz +CUB37DAY0E10,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0E10_H3VY5DRX2_ACTGAGCG-AGAGGATA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0E10_H3VY5DRX2_ACTGAGCG-AGAGGATA_L001_R2.fastq.gz +CUB37DAY0E11,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0E11_H3VY5DRX2_ACTGAGCG-CTCCTTAC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0E11_H3VY5DRX2_ACTGAGCG-CTCCTTAC_L001_R2.fastq.gz +CUB37DAY0E12,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0E12_H3VY5DRX2_ACTGAGCG-TATGCAGT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0E12_H3VY5DRX2_ACTGAGCG-TATGCAGT_L001_R2.fastq.gz +CUB37DAY0E2,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0E2_H3VY5DRX2_TAGCGCTC-AGAGGATA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0E2_H3VY5DRX2_TAGCGCTC-AGAGGATA_L001_R2.fastq.gz +CUB37DAY0E3,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0E3_H3VY5DRX2_TAGCGCTC-CTCCTTAC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0E3_H3VY5DRX2_TAGCGCTC-CTCCTTAC_L001_R2.fastq.gz +CUB37DAY0E4,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0E4_H3VY5DRX2_TAGCGCTC-TATGCAGT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0E4_H3VY5DRX2_TAGCGCTC-TATGCAGT_L001_R2.fastq.gz +CUB37DAY0E5,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0E5_H3VY5DRX2_TAGCGCTC-TACTCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0E5_H3VY5DRX2_TAGCGCTC-TACTCCTT_L001_R2.fastq.gz +CUB37DAY0E6,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0E6_H3VY5DRX2_TAGCGCTC-AGGCTTAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0E6_H3VY5DRX2_TAGCGCTC-AGGCTTAG_L001_R2.fastq.gz +CUB37DAY0E7,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0E7_H3VY5DRX2_TAGCGCTC-ATTAGACG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0E7_H3VY5DRX2_TAGCGCTC-ATTAGACG_L001_R2.fastq.gz +CUB37DAY0E8,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0E8_H3VY5DRX2_TAGCGCTC-CGGAGAGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0E8_H3VY5DRX2_TAGCGCTC-CGGAGAGA_L001_R2.fastq.gz +CUB37DAY0E9,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0E9_H3VY5DRX2_ACTGAGCG-ATAGAGAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0E9_H3VY5DRX2_ACTGAGCG-ATAGAGAG_L001_R2.fastq.gz +CUB37DAY0F1,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0F1_H3VY5DRX2_ACTGAGCG-TACTCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0F1_H3VY5DRX2_ACTGAGCG-TACTCCTT_L001_R2.fastq.gz +CUB37DAY0F10,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0F10_H3VY5DRX2_CCTAAGAC-AGGCTTAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0F10_H3VY5DRX2_CCTAAGAC-AGGCTTAG_L001_R2.fastq.gz +CUB37DAY0F11,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0F11_H3VY5DRX2_CCTAAGAC-ATTAGACG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0F11_H3VY5DRX2_CCTAAGAC-ATTAGACG_L001_R2.fastq.gz +CUB37DAY0F12,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0F12_H3VY5DRX2_CCTAAGAC-CGGAGAGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0F12_H3VY5DRX2_CCTAAGAC-CGGAGAGA_L001_R2.fastq.gz +CUB37DAY0F2,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0F2_H3VY5DRX2_ACTGAGCG-AGGCTTAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0F2_H3VY5DRX2_ACTGAGCG-AGGCTTAG_L001_R2.fastq.gz +CUB37DAY0F3,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0F3_H3VY5DRX2_ACTGAGCG-ATTAGACG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0F3_H3VY5DRX2_ACTGAGCG-ATTAGACG_L001_R2.fastq.gz +CUB37DAY0F4,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0F4_H3VY5DRX2_ACTGAGCG-CGGAGAGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0F4_H3VY5DRX2_ACTGAGCG-CGGAGAGA_L001_R2.fastq.gz +CUB37DAY0F5,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0F5_H3VY5DRX2_CCTAAGAC-ATAGAGAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0F5_H3VY5DRX2_CCTAAGAC-ATAGAGAG_L001_R2.fastq.gz +CUB37DAY0F6,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0F6_H3VY5DRX2_CCTAAGAC-AGAGGATA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0F6_H3VY5DRX2_CCTAAGAC-AGAGGATA_L001_R2.fastq.gz +CUB37DAY0F7,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0F7_H3VY5DRX2_CCTAAGAC-CTCCTTAC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0F7_H3VY5DRX2_CCTAAGAC-CTCCTTAC_L001_R2.fastq.gz +CUB37DAY0F8,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0F8_H3VY5DRX2_CCTAAGAC-TATGCAGT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0F8_H3VY5DRX2_CCTAAGAC-TATGCAGT_L001_R2.fastq.gz +CUB37DAY0F9,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0F9_H3VY5DRX2_CCTAAGAC-TACTCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0F9_H3VY5DRX2_CCTAAGAC-TACTCCTT_L001_R2.fastq.gz +CUB37DAY0G1,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0G1_H3VY5DRX2_CGATCAGT-ATAGAGAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0G1_H3VY5DRX2_CGATCAGT-ATAGAGAG_L001_R2.fastq.gz +CUB37DAY0G10,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0G10_H3VY5DRX2_TGCAGCTA-AGAGGATA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0G10_H3VY5DRX2_TGCAGCTA-AGAGGATA_L001_R2.fastq.gz +CUB37DAY0G11,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0G11_H3VY5DRX2_TGCAGCTA-CTCCTTAC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0G11_H3VY5DRX2_TGCAGCTA-CTCCTTAC_L001_R2.fastq.gz +CUB37DAY0G12,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0G12_H3VY5DRX2_TGCAGCTA-TATGCAGT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0G12_H3VY5DRX2_TGCAGCTA-TATGCAGT_L001_R2.fastq.gz +CUB37DAY0G2,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0G2_H3VY5DRX2_CGATCAGT-AGAGGATA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0G2_H3VY5DRX2_CGATCAGT-AGAGGATA_L001_R2.fastq.gz +CUB37DAY0G4,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0G4_H3VY5DRX2_CGATCAGT-TATGCAGT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0G4_H3VY5DRX2_CGATCAGT-TATGCAGT_L001_R2.fastq.gz +CUB37DAY0G5,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0G5_H3VY5DRX2_CGATCAGT-TACTCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0G5_H3VY5DRX2_CGATCAGT-TACTCCTT_L001_R2.fastq.gz +CUB37DAY0G6,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0G6_H3VY5DRX2_CGATCAGT-AGGCTTAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0G6_H3VY5DRX2_CGATCAGT-AGGCTTAG_L001_R2.fastq.gz +CUB37DAY0G7,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0G7_H3VY5DRX2_CGATCAGT-ATTAGACG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0G7_H3VY5DRX2_CGATCAGT-ATTAGACG_L001_R2.fastq.gz +CUB37DAY0G8,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0G8_H3VY5DRX2_CGATCAGT-CGGAGAGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0G8_H3VY5DRX2_CGATCAGT-CGGAGAGA_L001_R2.fastq.gz +CUB37DAY0G9,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0G9_H3VY5DRX2_TGCAGCTA-ATAGAGAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0G9_H3VY5DRX2_TGCAGCTA-ATAGAGAG_L001_R2.fastq.gz +CUB37DAY0H1,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0H1_H3VY5DRX2_TGCAGCTA-TACTCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0H1_H3VY5DRX2_TGCAGCTA-TACTCCTT_L001_R2.fastq.gz +CUB37DAY0H10,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0H10_H3VY5DRX2_TCGACGTC-AGGCTTAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0H10_H3VY5DRX2_TCGACGTC-AGGCTTAG_L001_R2.fastq.gz +CUB37DAY0H11,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0H11_H3VY5DRX2_TCGACGTC-ATTAGACG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0H11_H3VY5DRX2_TCGACGTC-ATTAGACG_L001_R2.fastq.gz +CUB37DAY0H12,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0H12_H3VY5DRX2_TCGACGTC-CGGAGAGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0H12_H3VY5DRX2_TCGACGTC-CGGAGAGA_L001_R2.fastq.gz +CUB37DAY0H2,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0H2_H3VY5DRX2_TGCAGCTA-AGGCTTAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0H2_H3VY5DRX2_TGCAGCTA-AGGCTTAG_L001_R2.fastq.gz +CUB37DAY0H3,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0H3_H3VY5DRX2_TGCAGCTA-ATTAGACG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0H3_H3VY5DRX2_TGCAGCTA-ATTAGACG_L001_R2.fastq.gz +CUB37DAY0H4,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0H4_H3VY5DRX2_TGCAGCTA-CGGAGAGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0H4_H3VY5DRX2_TGCAGCTA-CGGAGAGA_L001_R2.fastq.gz +CUB37DAY0H5,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0H5_H3VY5DRX2_TCGACGTC-ATAGAGAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0H5_H3VY5DRX2_TCGACGTC-ATAGAGAG_L001_R2.fastq.gz +CUB37DAY0H6,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0H6_H3VY5DRX2_TCGACGTC-AGAGGATA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0H6_H3VY5DRX2_TCGACGTC-AGAGGATA_L001_R2.fastq.gz +CUB37DAY0H7,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0H7_H3VY5DRX2_TCGACGTC-CTCCTTAC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0H7_H3VY5DRX2_TCGACGTC-CTCCTTAC_L001_R2.fastq.gz +CUB37DAY0H8,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0H8_H3VY5DRX2_TCGACGTC-TATGCAGT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0H8_H3VY5DRX2_TCGACGTC-TATGCAGT_L001_R2.fastq.gz +CUB37DAY0H9,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0H9_H3VY5DRX2_TCGACGTC-TACTCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY0_R0882-S0001_A68701_CUB37DAY0H9_H3VY5DRX2_TCGACGTC-TACTCCTT_L001_R2.fastq.gz +CUB37DAY7A1,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7A1_H3VY5DRX2_ACTCGCTA-CTAGTCGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7A1_H3VY5DRX2_ACTCGCTA-CTAGTCGA_L001_R2.fastq.gz +CUB37DAY7A10,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7A10_H3VY5DRX2_GGAGCTAC-AGCTAGAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7A10_H3VY5DRX2_GGAGCTAC-AGCTAGAA_L001_R2.fastq.gz +CUB37DAY7A11,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7A11_H3VY5DRX2_GGAGCTAC-ACTCTAGG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7A11_H3VY5DRX2_GGAGCTAC-ACTCTAGG_L001_R2.fastq.gz +CUB37DAY7A12,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7A12_H3VY5DRX2_GGAGCTAC-TCTTACGC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7A12_H3VY5DRX2_GGAGCTAC-TCTTACGC_L001_R2.fastq.gz +CUB37DAY7A2,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7A2_H3VY5DRX2_ACTCGCTA-AGCTAGAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7A2_H3VY5DRX2_ACTCGCTA-AGCTAGAA_L001_R2.fastq.gz +CUB37DAY7A3,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7A3_H3VY5DRX2_ACTCGCTA-ACTCTAGG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7A3_H3VY5DRX2_ACTCGCTA-ACTCTAGG_L001_R2.fastq.gz +CUB37DAY7A4,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7A4_H3VY5DRX2_ACTCGCTA-TCTTACGC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7A4_H3VY5DRX2_ACTCGCTA-TCTTACGC_L001_R2.fastq.gz +CUB37DAY7A5,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7A5_H3VY5DRX2_ACTCGCTA-CTTAATAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7A5_H3VY5DRX2_ACTCGCTA-CTTAATAG_L001_R2.fastq.gz +CUB37DAY7A6,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7A6_H3VY5DRX2_ACTCGCTA-ATAGCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7A6_H3VY5DRX2_ACTCGCTA-ATAGCCTT_L001_R2.fastq.gz +CUB37DAY7A7,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7A7_H3VY5DRX2_ACTCGCTA-TAAGGCTC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7A7_H3VY5DRX2_ACTCGCTA-TAAGGCTC_L001_R2.fastq.gz +CUB37DAY7A8,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7A8_H3VY5DRX2_ACTCGCTA-TCGCATAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7A8_H3VY5DRX2_ACTCGCTA-TCGCATAA_L001_R2.fastq.gz +CUB37DAY7A9,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7A9_H3VY5DRX2_GGAGCTAC-CTAGTCGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7A9_H3VY5DRX2_GGAGCTAC-CTAGTCGA_L001_R2.fastq.gz +CUB37DAY7B1,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7B1_H3VY5DRX2_GGAGCTAC-CTTAATAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7B1_H3VY5DRX2_GGAGCTAC-CTTAATAG_L001_R2.fastq.gz +CUB37DAY7B10,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7B10_H3VY5DRX2_GCGTAGTA-ATAGCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7B10_H3VY5DRX2_GCGTAGTA-ATAGCCTT_L001_R2.fastq.gz +CUB37DAY7B11,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7B11_H3VY5DRX2_GCGTAGTA-TAAGGCTC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7B11_H3VY5DRX2_GCGTAGTA-TAAGGCTC_L001_R2.fastq.gz +CUB37DAY7B12,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7B12_H3VY5DRX2_GCGTAGTA-TCGCATAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7B12_H3VY5DRX2_GCGTAGTA-TCGCATAA_L001_R2.fastq.gz +CUB37DAY7B2,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7B2_H3VY5DRX2_GGAGCTAC-ATAGCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7B2_H3VY5DRX2_GGAGCTAC-ATAGCCTT_L001_R2.fastq.gz +CUB37DAY7B3,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7B3_H3VY5DRX2_GGAGCTAC-TAAGGCTC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7B3_H3VY5DRX2_GGAGCTAC-TAAGGCTC_L001_R2.fastq.gz +CUB37DAY7B4,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7B4_H3VY5DRX2_GGAGCTAC-TCGCATAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7B4_H3VY5DRX2_GGAGCTAC-TCGCATAA_L001_R2.fastq.gz +CUB37DAY7B5,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7B5_H3VY5DRX2_GCGTAGTA-CTAGTCGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7B5_H3VY5DRX2_GCGTAGTA-CTAGTCGA_L001_R2.fastq.gz +CUB37DAY7B6,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7B6_H3VY5DRX2_GCGTAGTA-AGCTAGAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7B6_H3VY5DRX2_GCGTAGTA-AGCTAGAA_L001_R2.fastq.gz +CUB37DAY7B7,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7B7_H3VY5DRX2_GCGTAGTA-ACTCTAGG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7B7_H3VY5DRX2_GCGTAGTA-ACTCTAGG_L001_R2.fastq.gz +CUB37DAY7B8,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7B8_H3VY5DRX2_GCGTAGTA-TCTTACGC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7B8_H3VY5DRX2_GCGTAGTA-TCTTACGC_L001_R2.fastq.gz +CUB37DAY7B9,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7B9_H3VY5DRX2_GCGTAGTA-CTTAATAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7B9_H3VY5DRX2_GCGTAGTA-CTTAATAG_L001_R2.fastq.gz +CUB37DAY7C1,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7C1_H3VY5DRX2_CGGAGCCT-CTAGTCGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7C1_H3VY5DRX2_CGGAGCCT-CTAGTCGA_L001_R2.fastq.gz +CUB37DAY7C10,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7C10_H3VY5DRX2_TACGCTGC-AGCTAGAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7C10_H3VY5DRX2_TACGCTGC-AGCTAGAA_L001_R2.fastq.gz +CUB37DAY7C11,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7C11_H3VY5DRX2_TACGCTGC-ACTCTAGG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7C11_H3VY5DRX2_TACGCTGC-ACTCTAGG_L001_R2.fastq.gz +CUB37DAY7C12,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7C12_H3VY5DRX2_TACGCTGC-TCTTACGC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7C12_H3VY5DRX2_TACGCTGC-TCTTACGC_L001_R2.fastq.gz +CUB37DAY7C2,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7C2_H3VY5DRX2_CGGAGCCT-AGCTAGAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7C2_H3VY5DRX2_CGGAGCCT-AGCTAGAA_L001_R2.fastq.gz +CUB37DAY7C3,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7C3_H3VY5DRX2_CGGAGCCT-ACTCTAGG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7C3_H3VY5DRX2_CGGAGCCT-ACTCTAGG_L001_R2.fastq.gz +CUB37DAY7C4,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7C4_H3VY5DRX2_CGGAGCCT-TCTTACGC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7C4_H3VY5DRX2_CGGAGCCT-TCTTACGC_L001_R2.fastq.gz +CUB37DAY7C5,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7C5_H3VY5DRX2_CGGAGCCT-CTTAATAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7C5_H3VY5DRX2_CGGAGCCT-CTTAATAG_L001_R2.fastq.gz +CUB37DAY7C6,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7C6_H3VY5DRX2_CGGAGCCT-ATAGCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7C6_H3VY5DRX2_CGGAGCCT-ATAGCCTT_L001_R2.fastq.gz +CUB37DAY7C7,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7C7_H3VY5DRX2_CGGAGCCT-TAAGGCTC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7C7_H3VY5DRX2_CGGAGCCT-TAAGGCTC_L001_R2.fastq.gz +CUB37DAY7C8,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7C8_H3VY5DRX2_CGGAGCCT-TCGCATAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7C8_H3VY5DRX2_CGGAGCCT-TCGCATAA_L001_R2.fastq.gz +CUB37DAY7C9,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7C9_H3VY5DRX2_TACGCTGC-CTAGTCGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7C9_H3VY5DRX2_TACGCTGC-CTAGTCGA_L001_R2.fastq.gz +CUB37DAY7D1,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7D1_H3VY5DRX2_TACGCTGC-CTTAATAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7D1_H3VY5DRX2_TACGCTGC-CTTAATAG_L001_R2.fastq.gz +CUB37DAY7D10,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7D10_H3VY5DRX2_ATGCGCAG-ATAGCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7D10_H3VY5DRX2_ATGCGCAG-ATAGCCTT_L001_R2.fastq.gz +CUB37DAY7D11,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7D11_H3VY5DRX2_ATGCGCAG-TAAGGCTC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7D11_H3VY5DRX2_ATGCGCAG-TAAGGCTC_L001_R2.fastq.gz +CUB37DAY7D12,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7D12_H3VY5DRX2_ATGCGCAG-TCGCATAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7D12_H3VY5DRX2_ATGCGCAG-TCGCATAA_L001_R2.fastq.gz +CUB37DAY7D2,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7D2_H3VY5DRX2_TACGCTGC-ATAGCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7D2_H3VY5DRX2_TACGCTGC-ATAGCCTT_L001_R2.fastq.gz +CUB37DAY7D3,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7D3_H3VY5DRX2_TACGCTGC-TAAGGCTC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7D3_H3VY5DRX2_TACGCTGC-TAAGGCTC_L001_R2.fastq.gz +CUB37DAY7D4,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7D4_H3VY5DRX2_TACGCTGC-TCGCATAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7D4_H3VY5DRX2_TACGCTGC-TCGCATAA_L001_R2.fastq.gz +CUB37DAY7D5,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7D5_H3VY5DRX2_ATGCGCAG-CTAGTCGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7D5_H3VY5DRX2_ATGCGCAG-CTAGTCGA_L001_R2.fastq.gz +CUB37DAY7D6,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7D6_H3VY5DRX2_ATGCGCAG-AGCTAGAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7D6_H3VY5DRX2_ATGCGCAG-AGCTAGAA_L001_R2.fastq.gz +CUB37DAY7D7,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7D7_H3VY5DRX2_ATGCGCAG-ACTCTAGG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7D7_H3VY5DRX2_ATGCGCAG-ACTCTAGG_L001_R2.fastq.gz +CUB37DAY7D8,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7D8_H3VY5DRX2_ATGCGCAG-TCTTACGC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7D8_H3VY5DRX2_ATGCGCAG-TCTTACGC_L001_R2.fastq.gz +CUB37DAY7D9,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7D9_H3VY5DRX2_ATGCGCAG-CTTAATAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7D9_H3VY5DRX2_ATGCGCAG-CTTAATAG_L001_R2.fastq.gz +CUB37DAY7E1,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7E1_H3VY5DRX2_TAGCGCTC-CTAGTCGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7E1_H3VY5DRX2_TAGCGCTC-CTAGTCGA_L001_R2.fastq.gz +CUB37DAY7E10,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7E10_H3VY5DRX2_ACTGAGCG-AGCTAGAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7E10_H3VY5DRX2_ACTGAGCG-AGCTAGAA_L001_R2.fastq.gz +CUB37DAY7E11,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7E11_H3VY5DRX2_ACTGAGCG-ACTCTAGG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7E11_H3VY5DRX2_ACTGAGCG-ACTCTAGG_L001_R2.fastq.gz +CUB37DAY7E12,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7E12_H3VY5DRX2_ACTGAGCG-TCTTACGC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7E12_H3VY5DRX2_ACTGAGCG-TCTTACGC_L001_R2.fastq.gz +CUB37DAY7E2,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7E2_H3VY5DRX2_TAGCGCTC-AGCTAGAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7E2_H3VY5DRX2_TAGCGCTC-AGCTAGAA_L001_R2.fastq.gz +CUB37DAY7E3,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7E3_H3VY5DRX2_TAGCGCTC-ACTCTAGG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7E3_H3VY5DRX2_TAGCGCTC-ACTCTAGG_L001_R2.fastq.gz +CUB37DAY7E4,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7E4_H3VY5DRX2_TAGCGCTC-TCTTACGC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7E4_H3VY5DRX2_TAGCGCTC-TCTTACGC_L001_R2.fastq.gz +CUB37DAY7E5,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7E5_H3VY5DRX2_TAGCGCTC-CTTAATAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7E5_H3VY5DRX2_TAGCGCTC-CTTAATAG_L001_R2.fastq.gz +CUB37DAY7E6,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7E6_H3VY5DRX2_TAGCGCTC-ATAGCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7E6_H3VY5DRX2_TAGCGCTC-ATAGCCTT_L001_R2.fastq.gz +CUB37DAY7E7,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7E7_H3VY5DRX2_TAGCGCTC-TAAGGCTC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7E7_H3VY5DRX2_TAGCGCTC-TAAGGCTC_L001_R2.fastq.gz +CUB37DAY7E8,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7E8_H3VY5DRX2_TAGCGCTC-TCGCATAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7E8_H3VY5DRX2_TAGCGCTC-TCGCATAA_L001_R2.fastq.gz +CUB37DAY7E9,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7E9_H3VY5DRX2_ACTGAGCG-CTAGTCGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7E9_H3VY5DRX2_ACTGAGCG-CTAGTCGA_L001_R2.fastq.gz +CUB37DAY7F1,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7F1_H3VY5DRX2_ACTGAGCG-CTTAATAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7F1_H3VY5DRX2_ACTGAGCG-CTTAATAG_L001_R2.fastq.gz +CUB37DAY7F10,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7F10_H3VY5DRX2_CCTAAGAC-ATAGCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7F10_H3VY5DRX2_CCTAAGAC-ATAGCCTT_L001_R2.fastq.gz +CUB37DAY7F11,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7F11_H3VY5DRX2_CCTAAGAC-TAAGGCTC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7F11_H3VY5DRX2_CCTAAGAC-TAAGGCTC_L001_R2.fastq.gz +CUB37DAY7F12,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7F12_H3VY5DRX2_CCTAAGAC-TCGCATAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7F12_H3VY5DRX2_CCTAAGAC-TCGCATAA_L001_R2.fastq.gz +CUB37DAY7F2,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7F2_H3VY5DRX2_ACTGAGCG-ATAGCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7F2_H3VY5DRX2_ACTGAGCG-ATAGCCTT_L001_R2.fastq.gz +CUB37DAY7F3,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7F3_H3VY5DRX2_ACTGAGCG-TAAGGCTC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7F3_H3VY5DRX2_ACTGAGCG-TAAGGCTC_L001_R2.fastq.gz +CUB37DAY7F4,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7F4_H3VY5DRX2_ACTGAGCG-TCGCATAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7F4_H3VY5DRX2_ACTGAGCG-TCGCATAA_L001_R2.fastq.gz +CUB37DAY7F5,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7F5_H3VY5DRX2_CCTAAGAC-CTAGTCGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7F5_H3VY5DRX2_CCTAAGAC-CTAGTCGA_L001_R2.fastq.gz +CUB37DAY7F6,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7F6_H3VY5DRX2_CCTAAGAC-AGCTAGAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7F6_H3VY5DRX2_CCTAAGAC-AGCTAGAA_L001_R2.fastq.gz +CUB37DAY7F7,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7F7_H3VY5DRX2_CCTAAGAC-ACTCTAGG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7F7_H3VY5DRX2_CCTAAGAC-ACTCTAGG_L001_R2.fastq.gz +CUB37DAY7F8,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7F8_H3VY5DRX2_CCTAAGAC-TCTTACGC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7F8_H3VY5DRX2_CCTAAGAC-TCTTACGC_L001_R2.fastq.gz +CUB37DAY7F9,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7F9_H3VY5DRX2_CCTAAGAC-CTTAATAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7F9_H3VY5DRX2_CCTAAGAC-CTTAATAG_L001_R2.fastq.gz +CUB37DAY7G1,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7G1_H3VY5DRX2_CGATCAGT-CTAGTCGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7G1_H3VY5DRX2_CGATCAGT-CTAGTCGA_L001_R2.fastq.gz +CUB37DAY7G10,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7G10_H3VY5DRX2_TGCAGCTA-AGCTAGAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7G10_H3VY5DRX2_TGCAGCTA-AGCTAGAA_L001_R2.fastq.gz +CUB37DAY7G11,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7G11_H3VY5DRX2_TGCAGCTA-ACTCTAGG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7G11_H3VY5DRX2_TGCAGCTA-ACTCTAGG_L001_R2.fastq.gz +CUB37DAY7G12,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7G12_H3VY5DRX2_TGCAGCTA-TCTTACGC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7G12_H3VY5DRX2_TGCAGCTA-TCTTACGC_L001_R2.fastq.gz +CUB37DAY7G2,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7G2_H3VY5DRX2_CGATCAGT-AGCTAGAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7G2_H3VY5DRX2_CGATCAGT-AGCTAGAA_L001_R2.fastq.gz +CUB37DAY7G3,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7G3_H3VY5DRX2_CGATCAGT-ACTCTAGG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7G3_H3VY5DRX2_CGATCAGT-ACTCTAGG_L001_R2.fastq.gz +CUB37DAY7G4,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7G4_H3VY5DRX2_CGATCAGT-TCTTACGC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7G4_H3VY5DRX2_CGATCAGT-TCTTACGC_L001_R2.fastq.gz +CUB37DAY7G5,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7G5_H3VY5DRX2_CGATCAGT-CTTAATAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7G5_H3VY5DRX2_CGATCAGT-CTTAATAG_L001_R2.fastq.gz +CUB37DAY7G6,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7G6_H3VY5DRX2_CGATCAGT-ATAGCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7G6_H3VY5DRX2_CGATCAGT-ATAGCCTT_L001_R2.fastq.gz +CUB37DAY7G7,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7G7_H3VY5DRX2_CGATCAGT-TAAGGCTC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7G7_H3VY5DRX2_CGATCAGT-TAAGGCTC_L001_R2.fastq.gz +CUB37DAY7G8,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7G8_H3VY5DRX2_CGATCAGT-TCGCATAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7G8_H3VY5DRX2_CGATCAGT-TCGCATAA_L001_R2.fastq.gz +CUB37DAY7G9,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7G9_H3VY5DRX2_TGCAGCTA-CTAGTCGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7G9_H3VY5DRX2_TGCAGCTA-CTAGTCGA_L001_R2.fastq.gz +CUB37DAY7H1,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7H1_H3VY5DRX2_TGCAGCTA-CTTAATAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7H1_H3VY5DRX2_TGCAGCTA-CTTAATAG_L001_R2.fastq.gz +CUB37DAY7H10,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7H10_H3VY5DRX2_TCGACGTC-ATAGCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7H10_H3VY5DRX2_TCGACGTC-ATAGCCTT_L001_R2.fastq.gz +CUB37DAY7H11,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7H11_H3VY5DRX2_TCGACGTC-TAAGGCTC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7H11_H3VY5DRX2_TCGACGTC-TAAGGCTC_L001_R2.fastq.gz +CUB37DAY7H12,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7H12_H3VY5DRX2_TCGACGTC-TCGCATAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7H12_H3VY5DRX2_TCGACGTC-TCGCATAA_L001_R2.fastq.gz +CUB37DAY7H2,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7H2_H3VY5DRX2_TGCAGCTA-ATAGCCTT_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7H2_H3VY5DRX2_TGCAGCTA-ATAGCCTT_L001_R2.fastq.gz +CUB37DAY7H3,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7H3_H3VY5DRX2_TGCAGCTA-TAAGGCTC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7H3_H3VY5DRX2_TGCAGCTA-TAAGGCTC_L001_R2.fastq.gz +CUB37DAY7H4,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7H4_H3VY5DRX2_TGCAGCTA-TCGCATAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7H4_H3VY5DRX2_TGCAGCTA-TCGCATAA_L001_R2.fastq.gz +CUB37DAY7H5,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7H5_H3VY5DRX2_TCGACGTC-CTAGTCGA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7H5_H3VY5DRX2_TCGACGTC-CTAGTCGA_L001_R2.fastq.gz +CUB37DAY7H6,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7H6_H3VY5DRX2_TCGACGTC-AGCTAGAA_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7H6_H3VY5DRX2_TCGACGTC-AGCTAGAA_L001_R2.fastq.gz +CUB37DAY7H7,, +CUB37DAY7H8,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7H8_H3VY5DRX2_TCGACGTC-TCTTACGC_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7H8_H3VY5DRX2_TCGACGTC-TCTTACGC_L001_R2.fastq.gz +CUB37DAY7H9,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7H9_H3VY5DRX2_TCGACGTC-CTTAATAG_L001_R1.fastq.gz,/ei/cb/development/lany/CB-GENANNO-525_Charlotte_Utting_EI_CU_ENQ-5286_A_01/Reads/CUB37DAY7_R0882-S0001_A68701_CUB37DAY7H9_H3VY5DRX2_TCGACGTC-CTTAATAG_L001_R2.fastq.gz diff --git a/scqc.config b/scqc.config deleted file mode 100644 index d306581..0000000 --- a/scqc.config +++ /dev/null @@ -1,28 +0,0 @@ - - -params.quantificationsoutdir = '/ei/scratch/uzun/redo_775/' -params.qcoutdir='/ei/scratch/uzun/redo_qc775/' - -params.reads='/ei/data/reads/PIP-2406/190909_A00478_0067_AHFTY3DRXX' -params.plate_info=2 -params.mtnamefile='' -params.idx='/ei/workarea/group-ga/uzun/scqc/References/human_w_ercc.idx' -params.samplesheet='/ei/workarea/group-ga/uzun/scqc/SmartSeq2_test4_details.csv' -params.pattern='?*_R{1,2}' -params.plate_ids=['V1a','V2a','H2a','H2b'] - -process.executor='slurm' -process.queue='ei-medium' -process.memory='32G' -process.time='3h' - -executor.queueSize=200 - -process { - withName: extension { memory = 64.GB } - withName: mkref { memory = 128.GB } - withName: recount { - memory = 64.GB - cpus = 2 - } -} diff --git a/scqc_nf.sh b/scqc_nf.sh index 5547b21..f1a6b19 100644 --- a/scqc_nf.sh +++ b/scqc_nf.sh @@ -1,168 +1,250 @@ -// before running:'source scqc_reqs-0.1' -// standard run case:'nextflow run some_path/scqc_nf.sh -c config_file &' +// standard run case:'nextflow run scqc_nf.sh -c PIP-3144.config -with-dag flowchart.png -with-report -resume' -//human_index='/ei/cb/common/Scripts/scqc/References/human_w_ercc.idx' -//mouse_index='/ei/cb/common/Scripts/scqc/References/mm_ERCC.idx' -//chicken_index='/ei/cb/common/Scripts/scqc/References/chicken_ERCC.idx' - -image_scater='/ei/cb/common/Scripts/scqc/Containers/R-3.5.2_scater.img' -image_json='/ei/cb/common/Scripts/scqc/Containers/R-3.5.2_bioMjsonS3.img' -image_doc='/ei/cb/common/Scripts/scqc/Containers/verse.simg' - -qc_script='/ei/cb/common/Scripts/scqc/Scripts/scqc_from_matrix.R' -merge_script='/ei/cb/common/Scripts/scqc/Scripts/merge_kallisto_quant.R' -k_scrape_script='/ei/cb/common/Scripts/scqc/Scripts/kallisto_mapping_scrape.R' -doc_script='/ei/cb/common/Scripts/scqc/Scripts/QCreport.Rmd' -plate_matrix_merge_script='/ei/cb/common/Scripts/scqc/Scripts/plate_merge.R' -tx2g_script='/ei/cb/common/Scripts/scqc/Scripts/est_counts_tx2gene.R' - -k_scrape_metric='p_pseudoaligned' -k_scrape_output='percent_pseudoaligned.txt' -doc_rdata='qc_for_doc.Rdata' - -Channel - .fromFilePairs("${params.reads}/${params.pattern}.fastq.gz") - .set{read_pairs} +nextflow.enable.dsl=2 process quantification { + debug true + label "image_rscater" + publishDir "$params.quantificationsoutdir" + + + tag "$sampleId" + input: + tuple val(sampleId), path(R1), path(R2) - beforeScript 'source kallisto-0.45.1' - publishDir "$params.quantificationsoutdir" - tag "$sampleId" + output: + path "${sampleId}" , emit: quants - input: - set sampleId, file(reads) from read_pairs + """ + kallisto quant -t 1 -i ${params.idx} -o $sampleId -b 100 $R1 $R2 + """ - output: - file "${sampleId}" into quants + /* + tag "${sample_id}" + input: + val sample_id + + output: + path "${sample_id}", emit: quants - """ - kallisto quant -i ${params.idx} -o $sampleId -b 100 $reads - """ + """ + kallisto quant -t 2 -i ${params.idx} -o $sample_id -b 100 $sample_id + """ + */ } process p_kal { + label "image_rscater" + // output percent_pseudoaligned.txt to qc_dir/ by copying publishDir "$params.qcoutdir", mode: 'copy' input: - file flag_check from quants.collect() + // wait for all kallisto processes to finish + path quants_check output: - file "${k_scrape_output}" into k_scrape_ch + path "percent_pseudoaligned.txt" """ - singularity exec ${image_json} Rscript ${k_scrape_script} ${params.quantificationsoutdir} ${k_scrape_output} ${k_scrape_metric} + Rscript ${params.RScript_dir}kallisto_mapping_scrape.R ${params.quantificationsoutdir} percent_pseudoaligned.txt p_pseudoaligned """ } + process q_merge { + label "image_rscater" tag "$plate_id" errorStrategy 'finish' - beforeScript 'source R-3.5.2' - + publishDir "$params.qcoutdir/$plate_id", mode: 'copy' + input: - file flag_check from k_scrape_ch - val plate_id from params.plate_ids + // wait for p_kal to output percent_pseudoaligned.txt - will be ln to current process dir, although it is not used. + path p_kal + val plate_id output: - file "tsv_name_${plate_id}" into count_file + path "est_counts${plate_id}_matrix.tsv" , emit: estcounts + val plate_id, emit: plate_id + // R script generate, e.g., $workdir/est_countsCU5DAY0_matrix.tsv + // and copy to qc_dir/$plate_id location """ - Rscript $merge_script ${params.quantificationsoutdir} est_counts ${plate_id}; - echo \$(ls -d -1 ${params.quantificationsoutdir}*.* | grep ${plate_id}_matrix.tsv) > tsv_name_${plate_id}; + workdir="\$(pwd)" && \ + Rscript ${params.RScript_dir}merge_kallisto_quant.R ${params.quantificationsoutdir} est_counts ${plate_id} \${workdir}; """ } process qc { + label "image_rscater" errorStrategy 'finish' beforeScript 'export HDF5_DISABLE_VERSION_CHECK=1' + tag "$plate_id" + + // publishDir "$params.qcoutdir/$plate_id", mode: 'copy', pattern: "{*.tsv, *.pdf, *.Rdata}" + publishDir "$params.qcoutdir/$plate_id", mode: 'copy' input: - file name_file from count_file + // e.g., quants_dir/est_countsCU5DAY0_matrix.tsv + path est_counts_file + path pc_pseudoalign_file + val plate_id output: - file name_file into qc_done + path "qc_${est_counts_file}.done", emit: complete_check + path "${plate_id}qc_for_doc.Rdata", emit: rdata + path "QC_meanexp_vs_freq${plate_id}.pdf", emit: figpdf + path "*.pdf" + path "*.tsv" """ - singularity exec ${image_scater} Rscript ${qc_script} \$(cat ${name_file}) ${params.qcoutdir} ${params.plate_info} ${params.samplesheet} ${params.mtnamefile} + workdir="\$(pwd)" && cd \${workdir} && \ + Rscript ${params.RScript_dir}scqc_from_matrix.meta.R ${est_counts_file} ${pc_pseudoalign_file} \${workdir} ${params.samplesheet} ${params.mtnamefile} && \ + touch qc_${est_counts_file}.done """ } +process gs { + errorStrategy 'finish' + publishDir "$params.qcoutdir/$plate_id", mode: 'copy' + label "image_rscater" + tag "$plate_id" + + input: + val plate_id + path figpdf + + output: + path "rename_QC_meanexp_vs_freq${plate_id}.png" + + """ + gs -dNOPAUSE -dQUIET -dBATCH -sDEVICE=png16m -sOutputFile=rename_QC_meanexp_vs_freq${plate_id}.png -r256 \ + ${figpdf} + """ +} + process doc { - publishDir "$params.qcoutdir", mode: 'copy' + label "image_rknit" + tag "$plate_id" + //maxForks 1 + + publishDir "$params.qcoutdir/$plate_id", mode: 'copy' + //cache false input: - file flag2_check from qc_done.collect() - val plate_id from params.plate_ids - + path qc_rdata + path qc_complete_check + path gs_png_file + val plate_id + path percent_pseudoaligned output: - file "Finished_${plate_id}.txt" into finished_ch + path "Finished_${plate_id}.txt", emit: complete_check + path "${plate_id}_QC_report.pdf", emit: pdf """ - singularity exec ${image_doc} Rscript -e \"options(warn=-1);objects<-\'${params.qcoutdir}${plate_id}${doc_rdata}\';mapping_file <- read.table(\'${params.qcoutdir}${k_scrape_output}\');rmarkdown::render(\'${doc_script}\', 'pdf_document', output_file=\'${plate_id}_QC_report.pdf\', output_dir=\'${params.qcoutdir}${plate_id}\')\"; - echo '${plate_id}' > Finished_${plate_id}.txt + workdir="\$(pwd)" && cd \${workdir} && echo \${workdir} && deref_rdata="\$(readlink ${qc_rdata})" && deref_png="\$(readlink ${gs_png_file})" && \ + Rscript -e \"options(warn=-1);objects<-\'\${deref_rdata}\';pngfile<-\'\${deref_png}\';mapping_file <- read.table(\'${percent_pseudoaligned}\');rmarkdown::render(\'${params.RScript_dir}QCreport.Rmd\', 'pdf_document', output_file=\'${plate_id}_QC_report.pdf\', output_dir=\'\${workdir}\')\" && \ + touch Finished_${plate_id}.txt """ } process mat_merge { - publishDir "$params.quantificationsoutdir", mode: 'copy' + // merge all plates est_counts${plate_id}_matrix.tsv into one + publishDir "$params.qcoutdir/all", mode: 'copy' + //cache false + label "image_rscater" input: - val id_list from finished_ch.collect() - + val est_counts_file_list + output: - file 'matrix_location.txt' into fortx2g_ch + path 'est_countsall_plates.tsv' + + // singularity exec R_verse.v5.img Rscript plate_merge.R quants_dir/ \ + // 'Finished_CU5DAY0.txt Finished_CU7DAY0.txt Finished_CU5DAY7.txt Finished_CU7DAY7.txt'; """ - singularity exec ${image_scater} Rscript ${plate_matrix_merge_script} ${params.quantificationsoutdir} \'${id_list}\'; - echo \$(ls -d -1 ${params.quantificationsoutdir}*.* | grep all) > matrix_location.txt + workdir="\$(pwd)" && cd \${workdir} && \ + Rscript ${params.RScript_dir}plate_merge.R \${workdir} est_counts \'${est_counts_file_list}\' nextflow; """ - } process tx2g { - publishDir "$params.quantificationsoutdir", mode: 'copy' - + publishDir "$params.qcoutdir/all", mode: 'copy' + label "image_rscater" input: - file tx_matrix_location from fortx2g_ch + path all_plates_tsv output: - file tx_matrix_location into forAllQC_ch + // path 'tx2g_finished.txt' + path 'plates_as_genelevel.tsv' """ - singularity exec ${image_json} Rscript ${tx2g_script} \$(cat ${tx_matrix_location}) ${params.quantificationsoutdir} ${params.species} + workdir="\$(pwd)" && cd \${workdir} && \ + Rscript ${params.RScript_dir}est_counts_tx2gene.R ${all_plates_tsv} \${workdir}/plates_as_genelevel.tsv ${params.species} ${params.trans2gen_tsv} """ } -process all_qc { - beforeScript 'export HDF5_DISABLE_VERSION_CHECK=1' +workflow QC_AND_DOC { + take: + est_counts_file + pc_pseudoalign_file + plate_ids + main: + qc( est_counts_file, pc_pseudoalign_file, plate_ids ) + gs( plate_ids, qc.out.figpdf ) + doc( qc.out.rdata, qc.out.complete_check, gs.out, plate_ids, pc_pseudoalign_file ) + emit: + doc.out.complete_check +} - input: - file name_file from forAllQC_ch +workflow QC_AND_DOC_plate_all { + take: + est_counts_file + pc_pseudoalign_file + main: + def plate_ids = Channel.fromList( ['all'] ) + qc( est_counts_file, pc_pseudoalign_file, plate_ids ) + gs( plate_ids, qc.out.figpdf ) + doc( qc.out.rdata, qc.out.complete_check, gs.out, plate_ids, pc_pseudoalign_file ) + emit: + doc.out.complete_check +} - output: - file 'qfolder_name' into all_folder_name +workflow { + def sample_ids = Channel.fromPath(params.samplesheet) | splitCsv(header:true) | map { row-> row.Sample_ID} + + def plate_ids = Channel.fromList(params.plate_ids) - """ - singularity exec ${image_scater} Rscript ${qc_script} \$(cat ${name_file}) ${params.qcoutdir} ${params.plate_info} ${params.samplesheet} ${params.mtnamefile}; - echo ${params.quantificationsoutdir} > qfolder_name; - """ -} + Channel + .fromPath(params.samplecsv) + .splitCsv(header:true) + .map { row -> tuple(row.sampleId, file(row.R1), file(row.R2)) } + .set {sample_ids_ch} -process all_doc { - publishDir "$params.qcoutdir", mode: 'copy' + quantification(sample_ids_ch) + + p_kal( quantification.out.quants.collect() ) + + q_merge(p_kal.out, plate_ids ) - input: - file qfold_name from all_folder_name + QC_AND_DOC(q_merge.out.estcounts, p_kal.out, q_merge.out.plate_id) - output: - file "Finished_all.txt" into all_finished_ch + mat_merge( q_merge.out.estcounts.collect() ) + + tx2g( mat_merge.out ) + + if(params.plate_ids.size() > 1) { + QC_AND_DOC_plate_all(mat_merge.out, p_kal.out) + } - """ - singularity exec ${image_doc} Rscript -e \"options(warn=-1);objects<-\'${params.qcoutdir}all${doc_rdata}\';mapping_file <- read.table(\'${params.qcoutdir}${k_scrape_output}\');rmarkdown::render(\'${doc_script}\', 'pdf_document', output_file=\'all_QC_report.pdf\', output_dir=\'${params.qcoutdir}all\')\"; - echo 'All' > Finished_all.txt - """ + } + + + + + + diff --git a/scqc_test4.config b/scqc_test4.config deleted file mode 100644 index 9bbcbd3..0000000 --- a/scqc_test4.config +++ /dev/null @@ -1,18 +0,0 @@ - - -params.quantificationsoutdir = '/ei/scratch/uzun/test_ppbfx775/' -params.qcoutdir='/ei/scratch/uzun/test_qc_ppbfx775/' -params.reads='/ei/data/reads/PIP-2406/190909_A00478_0067_AHFTY3DRXX' -params.mtnamefile='' -params.idx='/ei/workarea/group-ga/uzun/scqc/References/human_w_ercc.idx' -params.samplesheet='/ei/workarea/group-ga/uzun/scqc/SmartSeq2_test4_details.csv' -params.pattern='?*_R{1,2}' -params.plate_ids=['V1a','V2a','H2a','H2b'] - -process.executor='slurm' -process.queue='ei-medium' -process.memory='32G' -process.time='3h' - -executor.queueSize=200 -