Merge pull request #423 from EIT-ALIVE/fix/decrease_num_ratedetection_tests

Decrease the number of tests for RateDetection

Author: psomhorst

.github/workflows/release_github.yml

@@ -93,7 +93,7 @@ jobs:
           data-directory: ${{ env.EIT_PROCESSING_TEST_DATA }}
 
       - name: Run pytest
-        run: pytest -v
+        run: pytest -v --runslow
 
       - name: Install additional dependencies for building
         run: python3 -m pip install --upgrade ".[publishing]"

tests/conftest.py

@@ -22,6 +22,23 @@
 dummy_file = data_directory / "not_a_file.dummy"
 
 
+def pytest_addoption(parser: pytest.Parser):
+    parser.addoption("--runslow", action="store_true", default=False, help="run tests marked as slow")
+
+
+def pytest_configure(config: pytest.Config):
+    config.addinivalue_line("markers", "slow: mark test as slow to run")
+
+
+def pytest_collection_modifyitems(config: pytest.Config, items: list[pytest.Item]):
+    if config.getoption("--runslow"):
+        return
+    skip_slow = pytest.mark.skip(reason="need --runslow option to run")
+    for item in items:
+        if "slow" in item.keywords:
+            item.add_marker(skip_slow)
+
+
 @pytest.fixture(scope="session")
 def draeger1() -> Sequence:
     return load_eit_data(draeger_file1, vendor="draeger", sample_frequency=20, label="draeger1")

tests/test_rate_detection.py

@@ -179,6 +179,7 @@ def test_short_signal(signal_factory: Callable[..., EITData]):
 duration = np.linspace(10, 60, 5)
 
 
+@pytest.mark.slow
 @pytest.mark.parametrize(
     ("high_power_frequency", "low_power_frequency", "duration"),
     list(itertools.product(high_power_frequencies, low_power_frequencies, duration)),
@@ -212,6 +213,7 @@ def test_frequencies(
     assert np.isclose(non_refined_hr, low_power_frequency, rtol=0.2, atol=1 / MINUTE)
 
 
+@pytest.mark.slow
 @pytest.mark.parametrize(
     ("high_power_frequency", "harmonic_multiplier", "duration"),
     list(itertools.product(high_power_frequencies, range(2, 5), duration)),
@@ -247,6 +249,7 @@ def test_harmonic_heart_rate(
     assert np.isclose(hr, low_power_frequency, rtol=0.05, atol=0.5 / MINUTE)
 
 
+@pytest.mark.slow
 @pytest.mark.parametrize(
     ("high_power_frequency", "low_power_frequency", "frequency_multipliers"),
     list(itertools.product(high_power_frequencies, low_power_frequencies, [(1, 1.3), (1, 1.4)])),
@@ -291,6 +294,7 @@ def test_multiple_frequencies(
 scale_factors = (0.8, 0.9, 1.0, 1.1, 1.2)
 
 
+@pytest.mark.slow
 @pytest.mark.parametrize(
     ("high_power_frequency", "low_power_frequency", "high_frequency_scale_factor", "low_frequency_scale_factor"),
     list(itertools.product(high_power_frequencies, low_power_frequencies, scale_factors, scale_factors)),