Why quick binning mode only also run CONCOCT?

[qamrq]

Hello, according to the BASALT readme --sensitive quick should only run MetaBAT2 [200, 300, 400, 500] and Semibin2 [100] but while running its actually running CONCOCT also.

Input command:
echo "Starting BASALT Autobinning in $(pwd) at $(date)"
BASALT -a "$(paste -sd "," assemblies.txt)" -s "$(paste -sd "," shortreads.txt)" --module autobinning --sensitive quick -t 64 -m 500 --min-cpn 70 --max-ctn 10

Cluster_log:
Processing long-reads: []
Processing hifi-reads: []
Processing Hi-C reads: []
Output folder name will be: Final_binset
Process with extra binner: []
Quality check software: checkm2
Binning sensitivity: quick
Processing with: 64 threads
Processing with: 500 G
Running status: continue
Binning module: autobinning
Min completeness: 70
Max contamination: 10
Refinement parameter: quick
Extra binset(s) for data feeding: []
Refinement binset:
List of coverage file(s): []
Binset(s) list: []
BASALT started from step: 0

/home/.conda/envs/basalt_env/lib/python3.12/site-packages/concoct/init.py:1: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81.
import pkg_resources # part of setuptools
/home/.conda/envs/basalt_env/lib/python3.12/site-packages/concoct/init.py:1: UserWarning: pkg_resources is deprecated as an API. See https://setuptools.pypa.io/en/latest/pkg_resources.html. The pkg_resources package is slated for removal as early as 2025-11-30. Refrain from using this package or pin to Setuptools<81.
import pkg_resources # part of setuptools
Up and running. Check /metagenome_12_25/Goat/1_STR1_final_contigs.fa_200_concoct_genomes/log.txt for progress
Up and running. Check /metagenome_12_25/Goat/1_STR1_final_contigs.fa_100_concoct_genomes/log.txt for progress
Setting 32 OMP threads
Generate input data
Setting 32 OMP threads
Generate input data

Can you tell what I'm doing wrong? I'm currently running BASALT V1.2.

Regards,
QRQ

[zhaorui-bi]

@qamrq Thank you for proposing this problem of BASALT V1.2.0. We have fixed the problem with newest version in GitHub. You can check it and test it again.

Thank you again for using BASALT Software. Hope everthing will be ok.

ZHAORUI
BASALTHub TEAM