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fix conda ncurses issue
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scripts/install_conda_env.sh

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@@ -14,9 +14,12 @@ conda create -n encode-atac-seq-pipeline-macs2 --file ${SH_SCRIPT_DIR}/requireme
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conda create -n encode-atac-seq-pipeline-spp --file ${SH_SCRIPT_DIR}/requirements.spp.txt \
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--override-channels -c r -c bioconda -c defaults -y
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# adhoc fix for https://github.com/ENCODE-DCC/chip-seq-pipeline2/issues/259
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# force-install readline 6.2 from conda-forge (ignoring dependencies)
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conda install -n encode-atac-seq-pipeline-spp --no-deps --no-update-deps -y readline==6.2 -c conda-forge
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# adhoc fix for the following issues:
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# - https://github.com/ENCODE-DCC/chip-seq-pipeline2/issues/259
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# - https://github.com/ENCODE-DCC/chip-seq-pipeline2/issues/265
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# force-install readline 6.2, ncurses 5.9 from conda-forge (ignoring dependencies)
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conda install -n encode-atac-seq-pipeline-spp --no-deps --no-update-deps -y \
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readline==6.2 ncurses==5.9 -c conda-forge
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conda create -n encode-atac-seq-pipeline-python2 --file ${SH_SCRIPT_DIR}/requirements.python2.txt \
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--override-channels -c conda-forge -c bioconda -c defaults -y

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