upgrade genome_tsv in test inpu json:v1->v3

leepc12 · leepc12 · commit d8bdd2aebd85 · 2021-11-16T10:44:22.000-08:00
diff --git a/example_input_json/dx/ENCSR000DYI_subsampled_chr19_only_dx.json b/example_input_json/dx/ENCSR000DYI_subsampled_chr19_only_dx.json
@@ -1,6 +1,6 @@
 {
     "chip.pipeline_type" : "tf",
-    "chip.genome_tsv" : "dx://project-BKpvFg00VBPV975PgJ6Q03v6:/pipeline-genome-data/genome_tsv/v1/hg38_chr19_chrM_dx.tsv",
+    "chip.genome_tsv" : "dx://project-BKpvFg00VBPV975PgJ6Q03v6:/pipeline-genome-data/genome_tsv/v3/hg38_chr19_chrM.dx.tsv",
     "chip.fastqs_rep1_R1" : ["dx://project-BKpvFg00VBPV975PgJ6Q03v6:/pipeline-test-samples/encode-chip-seq-pipeline/ENCSR000DYI/fastq_subsampled/rep1.subsampled.25.fastq.gz"
     ],
     "chip.fastqs_rep2_R1" : ["dx://project-BKpvFg00VBPV975PgJ6Q03v6:/pipeline-test-samples/encode-chip-seq-pipeline/ENCSR000DYI/fastq_subsampled/rep2.subsampled.20.fastq.gz"
diff --git a/example_input_json/dx/ENCSR000DYI_subsampled_chr19_only_rep1_dx.json b/example_input_json/dx/ENCSR000DYI_subsampled_chr19_only_rep1_dx.json
@@ -1,6 +1,6 @@
 {
     "chip.pipeline_type" : "tf",
-    "chip.genome_tsv" : "dx://project-BKpvFg00VBPV975PgJ6Q03v6:/pipeline-genome-data/genome_tsv/v1/hg38_chr19_chrM_dx.tsv",
+    "chip.genome_tsv" : "dx://project-BKpvFg00VBPV975PgJ6Q03v6:/pipeline-genome-data/genome_tsv/v3/hg38_chr19_chrM.dx.tsv",
     "chip.fastqs_rep1_R1" : ["dx://project-BKpvFg00VBPV975PgJ6Q03v6:/pipeline-test-samples/encode-chip-seq-pipeline/ENCSR000DYI/fastq_subsampled/rep1.subsampled.25.fastq.gz"
     ],
     "chip.ctl_fastqs_rep1_R1" : ["dx://project-BKpvFg00VBPV975PgJ6Q03v6:/pipeline-test-samples/encode-chip-seq-pipeline/ENCSR000DYI/fastq_subsampled/ctl1.subsampled.25.fastq.gz"
diff --git a/example_input_json/dx_azure/ENCSR000DYI_subsampled_chr19_only_dx_azure.json b/example_input_json/dx_azure/ENCSR000DYI_subsampled_chr19_only_dx_azure.json
@@ -1,6 +1,6 @@
 {
     "chip.pipeline_type" : "tf",
-    "chip.genome_tsv" : "dx://project-F6K911Q9xyfgJ36JFzv03Z5J:/pipeline-genome-data/genome_tsv/v1/hg38_chr19_chrM_dx_azure.tsv",
+    "chip.genome_tsv" : "dx://project-F6K911Q9xyfgJ36JFzv03Z5J:/pipeline-genome-data/genome_tsv/v3/hg38_chr19_chrM.dx_azure.tsv",
     "chip.fastqs_rep1_R1" : ["dx://project-F6K911Q9xyfgJ36JFzv03Z5J:/pipeline-test-samples/encode-chip-seq-pipeline/ENCSR000DYI/fastq_subsampled/rep1.subsampled.25.fastq.gz"
     ],
     "chip.fastqs_rep2_R1" : ["dx://project-F6K911Q9xyfgJ36JFzv03Z5J:/pipeline-test-samples/encode-chip-seq-pipeline/ENCSR000DYI/fastq_subsampled/rep2.subsampled.15.fastq.gz"

Original file line number	Diff line number	Diff line change
`@@ -1,6 +1,6 @@`
`1`	`1`	`{`
`2`	`2`	`"chip.pipeline_type" : "tf",`
`3`		`- "chip.genome_tsv" : "dx://project-BKpvFg00VBPV975PgJ6Q03v6:/pipeline-genome-data/genome_tsv/v1/hg38_chr19_chrM_dx.tsv",`
	`3`	`+ "chip.genome_tsv" : "dx://project-BKpvFg00VBPV975PgJ6Q03v6:/pipeline-genome-data/genome_tsv/v3/hg38_chr19_chrM.dx.tsv",`
`4`	`4`	`"chip.fastqs_rep1_R1" : ["dx://project-BKpvFg00VBPV975PgJ6Q03v6:/pipeline-test-samples/encode-chip-seq-pipeline/ENCSR000DYI/fastq_subsampled/rep1.subsampled.25.fastq.gz"`
`5`	`5`	`],`
`6`	`6`	`"chip.fastqs_rep2_R1" : ["dx://project-BKpvFg00VBPV975PgJ6Q03v6:/pipeline-test-samples/encode-chip-seq-pipeline/ENCSR000DYI/fastq_subsampled/rep2.subsampled.20.fastq.gz"`
Original file line number	Diff line number	Diff line change
`@@ -1,6 +1,6 @@`
`1`	`1`	`{`
`2`	`2`	`"chip.pipeline_type" : "tf",`
`3`		`- "chip.genome_tsv" : "dx://project-F6K911Q9xyfgJ36JFzv03Z5J:/pipeline-genome-data/genome_tsv/v1/hg38_chr19_chrM_dx_azure.tsv",`
	`3`	`+ "chip.genome_tsv" : "dx://project-F6K911Q9xyfgJ36JFzv03Z5J:/pipeline-genome-data/genome_tsv/v3/hg38_chr19_chrM.dx_azure.tsv",`
`4`	`4`	`"chip.fastqs_rep1_R1" : ["dx://project-F6K911Q9xyfgJ36JFzv03Z5J:/pipeline-test-samples/encode-chip-seq-pipeline/ENCSR000DYI/fastq_subsampled/rep1.subsampled.25.fastq.gz"`
`5`	`5`	`],`
`6`	`6`	`"chip.fastqs_rep2_R1" : ["dx://project-F6K911Q9xyfgJ36JFzv03Z5J:/pipeline-test-samples/encode-chip-seq-pipeline/ENCSR000DYI/fastq_subsampled/rep2.subsampled.15.fastq.gz"`