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setup.md

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@@ -5,44 +5,42 @@ title: Preparations for participating in the tutorial
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This page includes some information on how to prepare for participating in this tutorial.
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> ## Prerequisites
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>
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> The prerequisites for the tutorial are listed on the
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> [tutorials home page]({{ page.root}}[% index.md %})
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> and are also eproduced here:
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> - Basic understanding of git (optional)
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>
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> - Basic understanding of your preferred command line interface (ie a bash terminal)
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>
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> - Access to CMIP data
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> and are also reproduced here:
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>
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> - Access to a suitable computing system (eg Jasmin, DLR machine)
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> *Minimal requirements:*
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> - Basic understanding of your preferred command line interface (ie a bash terminal)
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> - Laptop/desktop with [(mini)conda](https://docs.conda.io/en/latest/miniconda.html) installed
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> - Access to CMIP data
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>
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> - Github account (optional)
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> *Optional, but useful:*
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> - Basic understanding of git
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> - Access to a suitable computing system (eg CEDA-Jasmin, DKRZ-Mistral)
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> - GitHub account
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{: .prereq}
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## Optional tutorials to be prepared to use ESMValTool
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## Command line & git tutorials
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We typically use the command line to interact with ESMValTool.
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While most of us are likely to have experience with the command line,
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novices may want to work through this software carpentry unix shell course.
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novices may want to work through this software carpentry unix shell course:
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- Command line: [https://swcarpentry.github.io/shell-novice/](https://swcarpentry.github.io/shell-novice/)
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- Introduction to the unix shell: [https://swcarpentry.github.io/shell-novice/](https://swcarpentry.github.io/shell-novice/)
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Git is a distributed version-control system for tracking changes in source code during software development.
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It’s how we distribute, share, and manage the ESMValTool code.
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- git: [https://swcarpentry.github.io/git-novice/](https://swcarpentry.github.io/git-novice/)
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- Introduction to git: [https://swcarpentry.github.io/git-novice/](https://swcarpentry.github.io/git-novice/)
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## Access to CMIP and Observational data and a suitable compute cluster
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To complete this tutorial and use ESMValTool, you will need access to data in a reasonable format.
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Some data will be provided, but there is simply too much data available
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for your tutors to make it all available directly.
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To complete this tutorial and use ESMValTool, you will need access to data in a reasonable format
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and you will need some kind of computer to run ESMValTool.
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ESMValTool may be run on multiple platforms, from your local machine to
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large computing clusters.
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is locally stored on disk and accessible directly by the tool.
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Similarly, observational data would also be available at these sites.
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Here are a few options
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for compute clusters with ESGF nodes:
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Here are a few options for compute clusters with ESGF nodes:
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- CEDA-Jasmin (UK):
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- DKRZ (Germany):
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- ETHZ (Switzerland):
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A full list of all ESGF nodes is available [here](https://esgf.llnl.gov/nodes.html).
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If you're running on a computing cluster without an ESGF node, such as
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your local machine, or your institue machine, you will most likely
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have to make a local copy of the data that you need.
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If neccesairy, data can be downloaded using the
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While some data will be provided by your tutors, there is simply too much data
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for your tutors to make it all available directly.
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If you do not have access to an ESGF node, data can be downloaded using the
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[synda tool](https://prodiguer.github.io/synda/index.html).
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### CEDA-Jasmin
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Please skip this section if you are not going to use JASMIN and go [here](Github account (Advanced)).
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If you do not already have an account on JASMIN, then request an account as
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soon as possible.
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Please follow [these instructions on how to create a Jasmin account](https://help.jasmin.ac.uk/article/4435-get-a-jasmin-account-portal)

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