diff --git a/.github/workflows/CompatHelper.yml b/.github/workflows/CompatHelper.yml index a5e4fc7..a2ebf47 100644 --- a/.github/workflows/CompatHelper.yml +++ b/.github/workflows/CompatHelper.yml @@ -46,5 +46,5 @@ jobs: - uses: actions/checkout@v4 with: ref: 'keepalive' # The branch, tag or SHA to checkout. - - uses: bgctw/keepalive-workflow@master + - uses: earthyscience/keepalive-workflow@master diff --git a/README.md b/README.md index 31cda67..abee313 100644 --- a/README.md +++ b/README.md @@ -1,9 +1,9 @@ # Bigleaf -[![Stable](https://img.shields.io/badge/docs-stable-blue.svg)](https://bgctw.github.io/Bigleaf.jl/stable) -[![Dev](https://img.shields.io/badge/docs-dev-blue.svg)](https://bgctw.github.io/Bigleaf.jl/dev) -[![Build Status](https://github.com/bgctw/Bigleaf.jl/workflows/CI/badge.svg)](https://github.com/bgctw/Bigleaf.jl/actions) -[![Coverage](https://codecov.io/gh/bgctw/Bigleaf.jl/branch/main/graph/badge.svg)](https://codecov.io/gh/bgctw/Bigleaf.jl) +[![Stable](https://img.shields.io/badge/docs-stable-blue.svg)](https://earthyscience.github.io/Bigleaf.jl/stable) +[![Dev](https://img.shields.io/badge/docs-dev-blue.svg)](https://earthyscience.github.io/Bigleaf.jl/dev) +[![Build Status](https://github.com/earthyscience/Bigleaf.jl/workflows/CI/badge.svg)](https://github.com/earthyscience/Bigleaf.jl/actions) +[![Coverage](https://codecov.io/gh/earthyscience/Bigleaf.jl/branch/main/graph/badge.svg)](https://codecov.io/gh/earthyscience/Bigleaf.jl) **Bigleaf.jl** is a partial Julia port of Jürgen Knauer's @@ -29,20 +29,20 @@ using Pkg Pkg.add("Bigleaf") ``` -And then importet to the every Julia session by: +And then imported to every Julia session by: ```julia using Bigleaf ``` ## Usage -See the [Documentation](https://bgctw.github.io/Bigleaf.jl/dev/) -that includes a [walkthrough](https://bgctw.github.io/Bigleaf.jl/dev/walkthrough/). +See the [Documentation](https://earthyscience.github.io/Bigleaf.jl/dev/) +that includes a [walkthrough](https://earthyscience.github.io/Bigleaf.jl/dev/walkthrough/). -[Please report bugs or issues here](https://github.com/bgctw/Bigleaf.jl/issues) +[Please report bugs or issues here](https://github.com/earthyscience/Bigleaf.jl/issues) ## Package content We are porting functionality of the [R package](https://bitbucket.org/juergenknauer/Bigleaf) as needed. Please -file an [issue](https://github.com/bgctw/Bigleaf.jl/issues) if you need a specific feature. +file an [issue](https://github.com/earthyscience/Bigleaf.jl/issues) if you need a specific feature. At the current state we ported - Meteorological variables diff --git a/docs/make.jl b/docs/make.jl index 59d0b54..b985334 100644 --- a/docs/make.jl +++ b/docs/make.jl @@ -12,13 +12,13 @@ doctest(Bigleaf, manual = false) makedocs(; # modules=[Bigleaf], # uncomment to show warnings on non-included docstrings authors="Thomas Wutzler , Jürgen Knauer and contributors", - #repo="https://github.com/bgctw/Bigleaf.jl/blob/{commit}{path}#{line}", - repo = Remotes.GitHub("bgctw", "Bigleaf.jl"), + #repo="https://github.com/earthyscience/Bigleaf.jl/blob/{commit}{path}#{line}", + repo = Remotes.GitHub("earthyscience", "Bigleaf.jl"), sitename="Bigleaf.jl", doctestfilters=[r".*Info.*"], format=Documenter.HTML(; prettyurls=get(ENV, "CI", "false") == "true", - canonical="https://bgctw.github.io/Bigleaf.jl", + canonical="https://earthyscience.github.io/Bigleaf.jl", assets=String[], ), pages=[ @@ -43,6 +43,6 @@ makedocs(; ) deploydocs(; - repo="github.com/bgctw/Bigleaf.jl", + repo="github.com/earthyscience/Bigleaf.jl", devbranch="main", ) diff --git a/docs/src/index.md b/docs/src/index.md index 16280b8..7503785 100644 --- a/docs/src/index.md +++ b/docs/src/index.md @@ -3,7 +3,7 @@ CurrentModule = Bigleaf ``` # Bigleaf -Documentation for [Bigleaf](https://github.com/bgctw/Bigleaf.jl). +Documentation for [Bigleaf](https://github.com/earthyscience/Bigleaf.jl). ```@contents Pages = ["index.md",] diff --git a/docs/src/walkthrough.md b/docs/src/walkthrough.md index 4ffa229..1eda296 100644 --- a/docs/src/walkthrough.md +++ b/docs/src/walkthrough.md @@ -41,7 +41,7 @@ from the `bigleaf` [R package](https://bitbucket.org/juergenknauer/Bigleaf/) repository and contains half-hourly data of meteorological and flux measurements made in June 2014. For loading the RData into Julia, see the -[source](https://github.com/bgctw/Bigleaf.jl/blob/main/docs/src/walkthrough.md?plain=1#L26) +[source](https://github.com/earthyscience/Bigleaf.jl/blob/main/docs/src/walkthrough.md?plain=1#L26) of this file. We give the data.frame a shorter name here and create a timestamp. ```@example doc diff --git a/src/surface_roughness.jl b/src/surface_roughness.jl index 67dd53e..7422b03 100755 --- a/src/surface_roughness.jl +++ b/src/surface_roughness.jl @@ -188,7 +188,7 @@ function roughness_parameters(method::Roughness_wind_profile, # zr, d, Tair, pressure, ustar, H; stab_formulation, constants)).psi_m psi_m = getindex.(stability_correction.( zr, d, Tair, pressure, ustar, H; stab_formulation, constants), :psi_m) - # https://discourse.julialang.org/t/eltype-changed-during-broadcast-with-missing/71312?u=bgctw + # https://discourse.julialang.org/t/eltype-changed-during-broadcast-with-missing/71312?u=earthyscience res_eltype = Union{eltype(ustar),eltype(wind),eltype(Tair),eltype(pressure),eltype(H)} psi_m = convert(Vector{res_eltype}, psi_m)::Vector{res_eltype} rp = roughness_parameters(method, ustar, wind, psi_m; zh, zr, d, constants, kwargs...)