Put docker context to root

Author: danlooo

.dockerignore

@@ -0,0 +1 @@
+.gitignore

.binder/Dockerfile Dockerfile.binder/Dockerfile renamed to Dockerfile

@@ -3,7 +3,7 @@
 
 FROM debian:stable-slim AS base
 ENV JULIA_VERSION=1.11.4
-COPY apt.txt .
+COPY env/apt.txt .
 RUN \
     # base
     apt-get update && \
@@ -23,12 +23,12 @@ RUN \
 ENV PATH="/root/miniconda3/bin:$PATH"
 
 FROM base AS python
-COPY environment.yml .
+COPY env/environment.yml .
 RUN conda env update --file environment.yml --prune --name base
 
 FROM base AS julia
-COPY Project.toml /root/.julia/environments/v1.11/Project.toml
-COPY Manifest.toml /root/.julia/environments/v1.11/Manifest.toml
+COPY env/Project.toml /root/.julia/environments/v1.11/Project.toml
+COPY env/Manifest.toml /root/.julia/environments/v1.11/Manifest.toml
 RUN julia -e 'using Pkg; Pkg.instantiate(); Pkg.status()'
 
 FROM base AS final
@@ -37,6 +37,6 @@ COPY --from=python /root/miniconda3/ /root/miniconda3/
 COPY --from=julia /usr/local/bin/julia /usr/local/bin/julia
 COPY --from=julia /usr/local/lib/julia /usr/local/lib/julia
 COPY --from=julia /root/.julia /root/.julia
-COPY fix_gdal.sh .
+COPY env/fix_gdal.sh .
 RUN bash fix_gdal.sh
 CMD ["jupyter", "notebook", "--allow-root"]

NOTES.md

@@ -0,0 +1,42 @@
+# FAIRSEND meeting 2025-05-08
+
+- bids paper submitted
+
+## Software readiness review
+
+- scheduled on 2025-06-19
+- ensure that the workflow works on our machine (eodc VM)
+- no template with formal requirements
+- Stephan needs to write as well
+
+- Date: week before lps, 18.6.25?, doodle: 16,17,18,20
+
+## Meeting with EODC
+
+- Asked poll to find a date on 28.4. at https://dud-poll.inf.tu-dresden.de/aCcu2iUisQ/
+- No one replied. Did I do sth. wrong? (holiday black hole...)
+- Invited Christian Briese, since he did not respond, lets just do another poll :)
+- Service readyness review is in Augus
+
+- neues doodle: Fransika König, [email protected]
+- nächste 2 wochen
+
+## ESA living planets poster
+
+- We have 2 posters accepted
+- send drafts to zaynab until end of may
+- BGC prints them
+- 23—27 JUNE 2025 VIENNA, AUSTRIA
+- LPS did not publish a poster template yet
+- Going: Daniel, Felix
+
+## Next steps: To Do in May
+
+- Any major tasks required for deployment?
+- Daniel: draft workflow poster
+- Felix: draft algo poster -> update existing one
+- Stephan: draft software readiness report
+
+# Stephan
+
+- stat. kompliierung zu openEO, felix schreibt an

README.md

@@ -13,7 +13,6 @@ This repository contains code and documentation for a FAIR workflow based on the
 | -------------------------------------------- | ------------------------------------------------------------------------------------------------ |
 | [`RQADeforestation.jl`](RQADeforestation.jl) | git submodule to the underlying Julia package                                                    |
 | [`infrastructure`](infrastructure)           | VM setup description using Terraform                                                             |
-| [`ogc-api`](ogc-api)                         | OGC API using pygeoapi                                                                           |
 | [`ogc-app-cwl`](ogc-app-cwl)                 | OGC Application Package as a CWL workflow                                                        |
 | [`website`](website)                         | [Project website](https://earthyscience.github.io/FAIRSenDD) with documentation and workflow GUI |