From 72a9e0a2eaf68acee43d110dc323a5e424055424 Mon Sep 17 00:00:00 2001 From: danlooo Date: Tue, 28 Oct 2025 15:00:06 +0100 Subject: [PATCH 1/3] Add explicit binder dockerfile --- .binder/Dockerfile | 42 + .binder/Manifest.toml | 2620 ++++++++++++++++++++++++++++++++++++++- .binder/Project.toml | 8 +- .binder/apt.txt | 9 +- .binder/environment.yml | 142 ++- .binder/install.R | 1 - 6 files changed, 2817 insertions(+), 5 deletions(-) create mode 100644 .binder/Dockerfile mode change 120000 => 100644 .binder/Manifest.toml mode change 120000 => 100644 .binder/Project.toml mode change 120000 => 100644 .binder/apt.txt mode change 120000 => 100644 .binder/environment.yml delete mode 120000 .binder/install.R diff --git a/.binder/Dockerfile b/.binder/Dockerfile new file mode 100644 index 0000000..2db3ad1 --- /dev/null +++ b/.binder/Dockerfile @@ -0,0 +1,42 @@ +# repo2docker without this Dockerfile would throw ArgumentError: Package OpenSSL_jll is required +# despite being part of Project.toml. This issue is specific to RQADeforestation.jl + +FROM debian:stable-slim AS base +ENV JULIA_VERSION=1.11.4 +COPY apt.txt . +RUN \ + # base + apt-get update && \ + apt-get install -y wget && \ + cat apt.txt | xargs apt-get install -y && \ + # conda + wget -O miniconda.sh https://repo.anaconda.com/miniconda/Miniconda3-py312_25.1.1-2-Linux-x86_64.sh && \ + mkdir -p /root/.conda && \ + bash miniconda.sh -b -p /root/miniconda3 && \ + rm -f miniconda.sh && \ + /root/miniconda3/bin/conda init && \ + # julia + wget -O julia.tar.gz https://julialang-s3.julialang.org/bin/linux/x64/1.11/julia-${JULIA_VERSION}-linux-x86_64.tar.gz && \ + tar zxvf julia.tar.gz && \ + mv julia-${JULIA_VERSION} /usr/local/lib/julia && \ + ln -s /usr/local/lib/julia/bin/julia /usr/local/bin/ +ENV PATH="/root/miniconda3/bin:$PATH" + +FROM base AS python +COPY environment.yml . +RUN conda env update --file environment.yml --prune --name base + +FROM base AS julia +COPY Project.toml /root/.julia/environments/v1.11/Project.toml +COPY Manifest.toml /root/.julia/environments/v1.11/Manifest.toml +RUN julia -e 'using Pkg; Pkg.instantiate(); Pkg.status()' + +FROM base AS final +WORKDIR /work +COPY --from=python /root/miniconda3/ /root/miniconda3/ +COPY --from=julia /usr/local/bin/julia /usr/local/bin/julia +COPY --from=julia /usr/local/lib/julia /usr/local/lib/julia +COPY --from=julia /root/.julia /root/.julia +COPY fix_gdal.sh . +RUN bash fix_gdal.sh +CMD ["jupyter", "notebook", "--allow-root"] \ No newline at end of file diff --git a/.binder/Manifest.toml b/.binder/Manifest.toml deleted file mode 120000 index 2d03dce..0000000 --- a/.binder/Manifest.toml +++ /dev/null @@ -1 +0,0 @@ -../website/envs/Manifest.toml \ No newline at end of file diff --git a/.binder/Manifest.toml b/.binder/Manifest.toml new file mode 100644 index 0000000..f369a0c --- /dev/null +++ b/.binder/Manifest.toml @@ -0,0 +1,2619 @@ +# This file is machine-generated - editing it directly is not advised + +julia_version = "1.11.6" +manifest_format = "2.0" +project_hash = "95a32c17bb770f8fc9d525889ae457cd0c7727bc" + +[[deps.ADTypes]] +git-tree-sha1 = "27cecae79e5cc9935255f90c53bb831cc3c870d7" +uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" +version = "1.18.0" + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" + ADTypesEnzymeCoreExt = "EnzymeCore" + + [deps.ADTypes.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + +[[deps.ASL_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "6252039f98492252f9e47c312c8ffda0e3b9e78d" +uuid = "ae81ac8f-d209-56e5-92de-9978fef736f9" +version = "0.1.3+0" + +[[deps.AWS]] +deps = ["Base64", "Compat", "Dates", "Downloads", "GitHub", "HTTP", "IniFile", "JSON", "MbedTLS", "Mocking", "OrderedCollections", "Random", "SHA", "ScopedValues", "Sockets", "URIs", "UUIDs", "XMLDict"] +git-tree-sha1 = "77ff32f2bc4494b72a6989cca8adf5343e710cec" +uuid = "fbe9abb3-538b-5e4e-ba9e-bc94f4f92ebc" +version = "1.97.0" + +[[deps.AWSS3]] +deps = ["AWS", "ArrowTypes", "Base64", "Compat", "Dates", "EzXML", "FilePathsBase", "MbedTLS", "Mocking", "OrderedCollections", "Retry", "SymDict", "URIs", "UUIDs", "XMLDict"] +git-tree-sha1 = "f4cac9ddb09d046b151cb86e202b436fa228603e" +uuid = "1c724243-ef5b-51ab-93f4-b0a88ac62a95" +version = "0.10.4" + +[[deps.AbstractFFTs]] +deps = ["LinearAlgebra"] +git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" +uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" +version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] + + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" + +[[deps.AbstractTrees]] +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" +uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "3b86719127f50670efe356bc11073d84b4ed7a5d" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.42" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + +[[deps.Adapt]] +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "7e35fca2bdfba44d797c53dfe63a51fabf39bfc0" +uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" +version = "4.4.0" +weakdeps = ["SparseArrays", "StaticArrays"] + + [deps.Adapt.extensions] + AdaptSparseArraysExt = "SparseArrays" + AdaptStaticArraysExt = "StaticArrays" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" + +[[deps.ArchGDAL]] +deps = ["CEnum", "ColorTypes", "Dates", "DiskArrays", "Extents", "GDAL", "GeoFormatTypes", "GeoInterface", "ImageCore", "Tables"] +git-tree-sha1 = "7048c7ffbdac14fe76f50ad3cce335cbff8b7816" +uuid = "c9ce4bd3-c3d5-55b8-8973-c0e20141b8c3" +version = "0.10.10" + + [deps.ArchGDAL.extensions] + ArchGDALJLD2Ext = "JLD2" + ArchGDALMakieExt = "Makie" + ArchGDALRecipesBaseExt = "RecipesBase" + + [deps.ArchGDAL.weakdeps] + JLD2 = "033835bb-8acc-5ee8-8aae-3f567f8a3819" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" + +[[deps.ArgCheck]] +git-tree-sha1 = "f9e9a66c9b7be1ad7372bbd9b062d9230c30c5ce" +uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" +version = "2.5.0" + +[[deps.ArgParse]] +deps = ["Logging", "TextWrap"] +git-tree-sha1 = "22cf435ac22956a7b45b0168abbc871176e7eecc" +uuid = "c7e460c6-2fb9-53a9-8c5b-16f535851c63" +version = "1.2.0" + +[[deps.ArgTools]] +uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" +version = "1.1.2" + +[[deps.ArnoldiMethod]] +deps = ["LinearAlgebra", "Random", "StaticArrays"] +git-tree-sha1 = "d57bd3762d308bded22c3b82d033bff85f6195c6" +uuid = "ec485272-7323-5ecc-a04f-4719b315124d" +version = "0.4.0" + +[[deps.ArrayInterface]] +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "d81ae5489e13bc03567d4fbbb06c546a5e53c857" +uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" +version = "7.22.0" + + [deps.ArrayInterface.extensions] + ArrayInterfaceBandedMatricesExt = "BandedMatrices" + ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" + ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = ["CUDSS", "CUDA"] + ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" + ArrayInterfaceChainRulesExt = "ChainRules" + ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceMetalExt = "Metal" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceTrackerExt = "Tracker" + + [deps.ArrayInterface.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + +[[deps.ArrowTypes]] +deps = ["Sockets", "UUIDs"] +git-tree-sha1 = "404265cd8128a2515a81d5eae16de90fdef05101" +uuid = "31f734f8-188a-4ce0-8406-c8a06bd891cd" +version = "2.3.0" + +[[deps.Arrow_jll]] +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Lz4_jll", "Thrift_jll", "Zlib_jll", "Zstd_jll", "boost_jll", "brotli_jll", "snappy_jll"] +git-tree-sha1 = "55ecf3d16295c26e96d2f0b65386d1a8414e2283" +uuid = "8ce61222-c28f-5041-a97a-c2198fb817bf" +version = "19.0.1+0" + +[[deps.Artifacts]] +uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" +version = "1.11.0" + +[[deps.Atomix]] +deps = ["UnsafeAtomics"] +git-tree-sha1 = "29bb0eb6f578a587a49da16564705968667f5fa8" +uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" +version = "1.1.2" + + [deps.Atomix.extensions] + AtomixCUDAExt = "CUDA" + AtomixMetalExt = "Metal" + AtomixOpenCLExt = "OpenCL" + AtomixoneAPIExt = "oneAPI" + + [deps.Atomix.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + OpenCL = "08131aa3-fb12-5dee-8b74-c09406e224a2" + oneAPI = "8f75cd03-7ff8-4ecb-9b8f-daf728133b1b" + +[[deps.AxisAlgorithms]] +deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" +uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" +version = "1.1.0" + +[[deps.Base64]] +uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" +version = "1.11.0" + +[[deps.Bessels]] +git-tree-sha1 = "4435559dc39793d53a9e3d278e185e920b4619ef" +uuid = "0e736298-9ec6-45e8-9647-e4fc86a2fe38" +version = "0.2.8" + +[[deps.BitFlags]] +git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" +uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" +version = "0.1.9" + +[[deps.BitTwiddlingConvenienceFunctions]] +deps = ["Static"] +git-tree-sha1 = 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b/.binder/apt.txt deleted file mode 120000 index dad19c4..0000000 --- a/.binder/apt.txt +++ /dev/null @@ -1 +0,0 @@ -../website/envs/apt.txt \ No newline at end of file diff --git a/.binder/apt.txt b/.binder/apt.txt new file mode 100644 index 0000000..0cdb972 --- /dev/null +++ b/.binder/apt.txt @@ -0,0 +1,8 @@ +zip +libpng-dev +libcurl4-openssl-dev +libudunits2-dev +libgdal-dev +libgeos-dev +libproj-dev +libxml2-dev \ No newline at end of file diff --git a/.binder/environment.yml b/.binder/environment.yml deleted file mode 120000 index e2e3c01..0000000 --- a/.binder/environment.yml +++ /dev/null @@ -1 +0,0 @@ -../website/envs/environment.yml \ No newline at end of file diff --git a/.binder/environment.yml b/.binder/environment.yml new file mode 100644 index 0000000..0b5052a --- /dev/null +++ b/.binder/environment.yml @@ -0,0 +1,141 @@ +name: /home/dloos/prj/FAIRSenDD/.binder +channels: + - defaults +dependencies: + - _libgcc_mutex=0.1=main + - _openmp_mutex=5.1=1_gnu + - 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ptyprocess=0.7.0=pyhd3eb1b0_2 + - pure_eval=0.2.3=py313h06a4308_0 + - pycparser=2.23=py313h06a4308_0 + - pygments=2.19.1=py313h06a4308_0 + - pysocks=1.7.1=py313h06a4308_0 + - python=3.13.9=h7e8bc2b_100_cp313 + - python-dateutil=2.9.0post0=py313h06a4308_2 + - python-fastjsonschema=2.20.0=py313h06a4308_0 + - python-json-logger=3.2.1=py313h06a4308_0 + - python_abi=3.13=1_cp313 + - pyyaml=6.0.2=py313h5eee18b_0 + - pyzmq=27.1.0=py313hcf8288c_0 + - qtconsole=5.7.0=py313h06a4308_0 + - qtpy=2.4.3=py313h06a4308_0 + - readline=8.3=hc2a1206_0 + - referencing=0.30.2=py313h06a4308_0 + - requests=2.32.5=py313h06a4308_0 + - rfc3339-validator=0.1.4=py313h06a4308_0 + - rfc3986-validator=0.1.1=py313h06a4308_0 + - rpds-py=0.22.3=py313h4aa5aa6_0 + - send2trash=1.8.2=py313h06a4308_1 + - setuptools=80.9.0=py313h06a4308_0 + - six=1.17.0=py313h06a4308_0 + - sniffio=1.3.0=py313h06a4308_0 + - soupsieve=2.5=py313h06a4308_0 + - sqlite=3.50.2=hb25bd0a_1 + - stack_data=0.6.3=py313h06a4308_0 + - terminado=0.18.1=py313h06a4308_0 + - tinycss2=1.4.0=py313h06a4308_0 + - tk=8.6.15=h54e0aa7_0 + - tornado=6.5.1=py313h5eee18b_0 + - traitlets=5.14.3=py313h06a4308_0 + - typing-extensions=4.15.0=py313h06a4308_0 + - typing_extensions=4.15.0=py313h06a4308_0 + - tzdata=2025b=h04d1e81_0 + - urllib3=2.5.0=py313h06a4308_0 + - wcwidth=0.2.13=py313h06a4308_0 + - webencodings=0.5.1=py313h06a4308_2 + - websocket-client=1.8.0=py313h06a4308_0 + - wheel=0.45.1=py313h06a4308_0 + - widgetsnbextension=4.0.14=py313h06a4308_0 + - xorg-libx11=1.8.12=h9b100fa_1 + - xorg-libxau=1.0.12=h9b100fa_0 + - xorg-libxdmcp=1.1.5=h9b100fa_0 + - xorg-xorgproto=2024.1=h5eee18b_1 + - xz=5.6.4=h5eee18b_1 + - yaml=0.2.5=h7b6447c_0 + - zeromq=4.3.5=hb0a5e54_1 + - zlib=1.3.1=hb25bd0a_0 + - pip: + - numpy==2.3.4 + - rqadeforestation==0.1.0 +prefix: /home/dloos/prj/FAIRSenDD/.binder diff --git a/.binder/install.R b/.binder/install.R deleted file mode 120000 index 2c0abe0..0000000 --- a/.binder/install.R +++ /dev/null @@ -1 +0,0 @@ -../website/envs/install.R \ No newline at end of file From 3ef2ce4768d0386e4e16ce27f84aa7277bb6c38e Mon Sep 17 00:00:00 2001 From: danlooo Date: Tue, 28 Oct 2025 15:03:36 +0100 Subject: [PATCH 2/3] Add fix_gdal --- .binder/.gitignore | 7 +++++++ .binder/fix_gdal.sh | 15 +++++++++++++++ 2 files changed, 22 insertions(+) create mode 100644 .binder/.gitignore create mode 100644 .binder/fix_gdal.sh diff --git a/.binder/.gitignore b/.binder/.gitignore new file mode 100644 index 0000000..844a12b --- /dev/null +++ b/.binder/.gitignore @@ -0,0 +1,7 @@ +* +!*.toml +!*.yml +!apt.txt +!*.sh +!Dockerfile +!.gitignore \ No newline at end of file diff --git a/.binder/fix_gdal.sh b/.binder/fix_gdal.sh new file mode 100644 index 0000000..7beff5c --- /dev/null +++ b/.binder/fix_gdal.sh @@ -0,0 +1,15 @@ +#!/usr/bin/bash + +# Fixes version incompatibility in quarto with JuliaCall +# see https://github.com/katrinabrock/juli-slipRs + +mkdir /root/.local +ln -s /usr/lib/x86_64-linux-gnu /root/.local/lib + +cat </root/.julia/artifacts/Overrides.toml +[a7073274-a066-55f0-b90d-d619367d196c] +GDAL = "/root/.local" + +[02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a] +XML2 = "/root/.local" +EOF From a5ea2389b0ab289af9c2d8af589dc2c9d2e3c776 Mon Sep 17 00:00:00 2001 From: danlooo Date: Tue, 28 Oct 2025 15:09:15 +0100 Subject: [PATCH 3/3] Put docker context to root --- .dockerignore | 1 + .binder/Dockerfile => Dockerfile | 10 ++++---- NOTES.md | 42 ++++++++++++++++++++++++++++++++ README.md | 1 - {.binder => env}/.gitignore | 0 {.binder => env}/Manifest.toml | 0 {.binder => env}/Project.toml | 0 {.binder => env}/apt.txt | 0 {.binder => env}/environment.yml | 0 {.binder => env}/fix_gdal.sh | 0 10 files changed, 48 insertions(+), 6 deletions(-) create mode 120000 .dockerignore rename .binder/Dockerfile => Dockerfile (87%) create mode 100644 NOTES.md rename {.binder => env}/.gitignore (100%) rename {.binder => env}/Manifest.toml (100%) rename {.binder => env}/Project.toml (100%) rename {.binder => env}/apt.txt (100%) rename {.binder => env}/environment.yml (100%) rename {.binder => env}/fix_gdal.sh (100%) diff --git a/.dockerignore b/.dockerignore new file mode 120000 index 0000000..3e4e48b --- /dev/null +++ b/.dockerignore @@ -0,0 +1 @@ +.gitignore \ No newline at end of file diff --git a/.binder/Dockerfile b/Dockerfile similarity index 87% rename from .binder/Dockerfile rename to Dockerfile index 2db3ad1..5e2d9e8 100644 --- a/.binder/Dockerfile +++ b/Dockerfile @@ -3,7 +3,7 @@ FROM debian:stable-slim AS base ENV JULIA_VERSION=1.11.4 -COPY apt.txt . +COPY env/apt.txt . RUN \ # base apt-get update && \ @@ -23,12 +23,12 @@ RUN \ ENV PATH="/root/miniconda3/bin:$PATH" FROM base AS python -COPY environment.yml . +COPY env/environment.yml . RUN conda env update --file environment.yml --prune --name base FROM base AS julia -COPY Project.toml /root/.julia/environments/v1.11/Project.toml -COPY Manifest.toml /root/.julia/environments/v1.11/Manifest.toml +COPY env/Project.toml /root/.julia/environments/v1.11/Project.toml +COPY env/Manifest.toml /root/.julia/environments/v1.11/Manifest.toml RUN julia -e 'using Pkg; Pkg.instantiate(); Pkg.status()' FROM base AS final @@ -37,6 +37,6 @@ COPY --from=python /root/miniconda3/ /root/miniconda3/ COPY --from=julia /usr/local/bin/julia /usr/local/bin/julia COPY --from=julia /usr/local/lib/julia /usr/local/lib/julia COPY --from=julia /root/.julia /root/.julia -COPY fix_gdal.sh . +COPY env/fix_gdal.sh . RUN bash fix_gdal.sh CMD ["jupyter", "notebook", "--allow-root"] \ No newline at end of file diff --git a/NOTES.md b/NOTES.md new file mode 100644 index 0000000..34a4d8f --- /dev/null +++ b/NOTES.md @@ -0,0 +1,42 @@ +# FAIRSEND meeting 2025-05-08 + +- bids paper submitted + +## Software readiness review + +- scheduled on 2025-06-19 +- ensure that the workflow works on our machine (eodc VM) +- no template with formal requirements +- Stephan needs to write as well + +- Date: week before lps, 18.6.25?, doodle: 16,17,18,20 + +## Meeting with EODC + +- Asked poll to find a date on 28.4. at https://dud-poll.inf.tu-dresden.de/aCcu2iUisQ/ +- No one replied. Did I do sth. wrong? (holiday black hole...) +- Invited Christian Briese, since he did not respond, lets just do another poll :) +- Service readyness review is in Augus + +- neues doodle: Fransika König, franziska.koenig@eodc.eu +- nächste 2 wochen + +## ESA living planets poster + +- We have 2 posters accepted +- send drafts to zaynab until end of may +- BGC prints them +- 23—27 JUNE 2025 VIENNA, AUSTRIA +- LPS did not publish a poster template yet +- Going: Daniel, Felix + +## Next steps: To Do in May + +- Any major tasks required for deployment? +- Daniel: draft workflow poster +- Felix: draft algo poster -> update existing one +- Stephan: draft software readiness report + +# Stephan + +- stat. kompliierung zu openEO, felix schreibt an diff --git a/README.md b/README.md index 8f89141..5e80ea3 100644 --- a/README.md +++ b/README.md @@ -13,7 +13,6 @@ This repository contains code and documentation for a FAIR workflow based on the | -------------------------------------------- | ------------------------------------------------------------------------------------------------ | | [`RQADeforestation.jl`](RQADeforestation.jl) | git submodule to the underlying Julia package | | [`infrastructure`](infrastructure) | VM setup description using Terraform | -| [`ogc-api`](ogc-api) | OGC API using pygeoapi | | [`ogc-app-cwl`](ogc-app-cwl) | OGC Application Package as a CWL workflow | | [`website`](website) | [Project website](https://earthyscience.github.io/FAIRSenDD) with documentation and workflow GUI | diff --git a/.binder/.gitignore b/env/.gitignore similarity index 100% rename from .binder/.gitignore rename to env/.gitignore diff --git a/.binder/Manifest.toml b/env/Manifest.toml similarity index 100% rename from .binder/Manifest.toml rename to env/Manifest.toml diff --git a/.binder/Project.toml b/env/Project.toml similarity index 100% rename from .binder/Project.toml rename to env/Project.toml diff --git a/.binder/apt.txt b/env/apt.txt similarity index 100% rename from .binder/apt.txt rename to env/apt.txt diff --git a/.binder/environment.yml b/env/environment.yml similarity index 100% rename from .binder/environment.yml rename to env/environment.yml diff --git a/.binder/fix_gdal.sh b/env/fix_gdal.sh similarity index 100% rename from .binder/fix_gdal.sh rename to env/fix_gdal.sh