update urls after transferring package from bgctw/REddyProc to EarthySciences/REddyProc

Author: bgctw

NEWS.md

@@ -10,7 +10,7 @@
 - include mlegp dependency again - its on CRAN again
 
 # REddyProc 1.3.2
-- Avoid strong dependency on mlegp (https://github.com/bgctw/REddyProc/issues/58).
+- Avoid strong dependency on mlegp (https://github.com/EarthyScience/REddyProc/issues/58).
   Daytime partitioning, unfortunately, now requires users to install package 
   mlegp by hand.
 - support reading basic variables from Ameriflux data files
@@ -19,7 +19,7 @@
 # REddyProc 1.3.1
 - bug fix for day-time partitioning: Adapt default of argument uStarScenKeep
   to reflect changes in naming the uStar threshold scenarios 
-  [#55](https://github.com/bgctw/REddyProc/issues/55#issue-1068184211).
+  [#55](https://github.com/EarthyScience/REddyProc/issues/55#issue-1068184211).
 
 # REddyProc 1.3.0
 Accumulations of improvements warrant a new version and new CRAN release

R/Example.R

@@ -24,7 +24,7 @@ getExamplePath <- function(
   # set default remoteDir inside function instead of argument default,
   # because it screws function signature
   if (!nzchar(remoteDir) ) remoteDir <-
-      "https://raw.githubusercontent.com/bgctw/REddyProc/master/examples"
+      "https://raw.githubusercontent.com/EarthyScience/REddyProc/master/examples"
   fullname <- file.path(exampleDir, filename)
   if (file.exists(fullname) ) return(fullname)
   if (isTRUE(isTryDownload) ) {

R/FileHandling.R

@@ -47,7 +47,7 @@ help_export <- function(
   ## \item Read basic variables from Ameriflux standard (as of 2022) files:
   ##   \code{\link{fLoadAmeriflux22}}
   ## \item Read NetCDF files -> moved to separate package REddyProcNCDF
-  ##   (https://github.com/bgctw/REddyProcNCDF)
+  ##   (https://github.com/EarthyScience/REddyProcNCDF)
   ## }
   ##
   ## Back to \link{REddyProc-package}.

README.Rmd

@@ -22,7 +22,7 @@ knitr::opts_chunk$set(
 
 <!-- badges: start -->
 [![CRAN_Status_Badge](http://www.r-pkg.org/badges/version/REddyProc)](http://cran.r-project.org/package=REddyProc)
-[![R-CMD-check](https://github.com/bgctw/REddyProc/workflows/R-CMD-check/badge.svg)](https://github.com/bgctw/REddyProc/actions)
+[![R-CMD-check](https://github.com/EarthyScience/REddyProc/workflows/R-CMD-check/badge.svg)](https://github.com/EarthyScience/REddyProc/actions)
 <!-- badges: end -->
 
 ## Overview
@@ -40,7 +40,7 @@ install.packages("REddyProc")
 
 # The development version from GitHub using devtools:
 # install.packages("devtools")
-devtools::install_github("bgctw/REddyProc")
+devtools::install_github("EarthyScience/REddyProc")
 ```
 
 The REddyProc~package requires a quite recent 
@@ -98,21 +98,21 @@ EProc$sPlotFingerprintY('NEE_f', Year = 1998)
 
 
 Further examples are in
-[vignette(useCase)](https://github.com/bgctw/REddyProc/blob/master/vignettes/useCase.md)
+[vignette(useCase)](https://github.com/EarthyScience/REddyProc/blob/master/vignettes/useCase.md)
 and
-[vignette(DEGebExample)](https://github.com/bgctw/REddyProc/blob/master/vignettes/DEGebExample.md)
+[vignette(DEGebExample)](https://github.com/EarthyScience/REddyProc/blob/master/vignettes/DEGebExample.md)
 and further md-files of the 
-[vignettes directory](https://github.com/bgctw/REddyProc/blob/master/vignettes).
+[vignettes directory](https://github.com/EarthyScience/REddyProc/blob/master/vignettes).
 
 
 ## Docker images
 Docker images are provided that comprise rstudio, rocker/tidyverse, and REddyProc.
 There are different version for the latest push to github, for the version on CRAN and for specific tags starting 
 from 1.1.4.
 
-- bgctw/reddyproc:latest   
-- bgctw/reddyproc_cran
-- bgctw/reddyproc:`tag`
+- EarthyScience/reddyproc:latest   
+- EarthyScience/reddyproc_cran
+- EarthyScience/reddyproc:`tag`
 
 They are usually run with installed docker by typing at a shell:
 ```

README.md

@@ -8,7 +8,7 @@ maybe clear cache before
 <!-- badges: start -->
 
 [![CRAN_Status_Badge](http://www.r-pkg.org/badges/version/REddyProc)](http://cran.r-project.org/package=REddyProc)
-[![R-CMD-check](https://github.com/bgctw/REddyProc/workflows/R-CMD-check/badge.svg)](https://github.com/bgctw/REddyProc/actions)
+[![R-CMD-check](https://github.com/EarthyScience/REddyProc/workflows/R-CMD-check/badge.svg)](https://github.com/EarthyScience/REddyProc/actions)
 <!-- badges: end -->
 
 ## Overview
@@ -28,7 +28,7 @@ install.packages("REddyProc")
 
 # The development version from GitHub using devtools:
 # install.packages("devtools")
-devtools::install_github("bgctw/REddyProc")
+devtools::install_github("EarthyScience/REddyProc")
 ```
 
 The REddyProc~package requires a quite recent versions of the tidyverse
@@ -87,21 +87,21 @@ EProc$sPlotFingerprintY('NEE_f', Year = 1998)
 ![](README-example-1.png)<!-- -->
 
 Further examples are in
-[vignette(useCase)](https://github.com/bgctw/REddyProc/blob/master/vignettes/useCase.md)
+[vignette(useCase)](https://github.com/EarthyScience/REddyProc/blob/master/vignettes/useCase.md)
 and
-[vignette(DEGebExample)](https://github.com/bgctw/REddyProc/blob/master/vignettes/DEGebExample.md)
+[vignette(DEGebExample)](https://github.com/EarthyScience/REddyProc/blob/master/vignettes/DEGebExample.md)
 and further md-files of the [vignettes
-directory](https://github.com/bgctw/REddyProc/blob/master/vignettes).
+directory](https://github.com/EarthyScience/REddyProc/blob/master/vignettes).
 
 ## Docker images
 
 Docker images are provided that comprise rstudio, rocker/tidyverse, and
 REddyProc. There are different version for the latest push to github,
 for the version on CRAN and for specific tags starting from 1.1.4.
 
-- bgctw/reddyproc:latest  
-- bgctw/reddyproc_cran
-- bgctw/reddyproc:`tag`
+- EarthyScience/reddyproc:latest  
+- EarthyScience/reddyproc_cran
+- EarthyScience/reddyproc:`tag`
 
 They are usually run with installed docker by typing at a shell:
 

develop/compareOldTool/EvaluationGLPartitioning.R

@@ -1,6 +1,6 @@
 #Script for testing the new partitioning GL for REddyProc
 ## install (newer version of) REddyProc
-# install_github(repo = "bgctw/REddyProc",branch = "master")
+# install_github(repo = "EarthyScience/REddyProc",branch = "master")
 
 library(REddyProc)
 # alternative

develop/compareOldTool/GLPartitioningTestCase.R

@@ -1,7 +1,7 @@
 # Script for running REddyProc with different options on 29 site-years
 #   same as was used in Wutzler17 for benchmarking daytime data
 
-# install_github(repo = "bgctw/REddyProc",branch = "master")
+# install_github(repo = "EarthyScience/REddyProc",branch = "master")
 
 if (!exists("partitionNEEGL") ) library(REddyProc)	# only load library if not sourced its already
 .tmp.f <- function(){