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lines changed Original file line number Diff line number Diff line change 9393# Sitemap settings
9494html_baseurl = 'https://ecogenomics.github.io/GTDBTk/'
9595sitemap_url_scheme = "{link}"
96+
97+ # Make version info available for substitution in RST files
98+ rst_epilog = f"""
99+ .. |release| replace:: { release }
100+ .. |version| replace:: { version }
101+ """
Original file line number Diff line number Diff line change @@ -22,13 +22,13 @@ specify those channels in that order!
2222
2323.. code-block :: bash
2424
25- # NOTE: replace 2.1.1 with the version you wish to install
25+ # NOTE: replace |release| with the version you wish to install
2626
2727 # using conda
28- conda create -n gtdbtk-2.1.1 -c conda-forge -c bioconda gtdbtk=2.1.1
28+ conda create -n gtdbtk-| release | -c conda-forge -c bioconda gtdbtk=| release |
2929
3030 # using mamba (alternative)
31- mamba create -n gtdbtk-2.1.1 -c conda-forge -c bioconda gtdbtk=2.1.1
31+ mamba create -n gtdbtk-| release | -c conda-forge -c bioconda gtdbtk=| release |
3232
3333 Step 3: Download and alias the GTDB-Tk reference data
3434-----------------------------------------------------
@@ -57,7 +57,7 @@ You can automatically alias ``GTDBTK_DATA_PATH`` whenever the environment is act
5757.. code-block :: bash
5858
5959 # Activate the GTDB-Tk conda environment
60- conda activate gtdbtk-2.1.1
60+ conda activate gtdbtk-| release |
6161
6262 # Set the environment variable to the directory containing the GTDB-Tk reference data
6363 conda env config vars set GTDBTK_DATA_PATH=" /path/to/unarchived/gtdbtk/data" ;
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