Skip to content

Commit 88e3353

Browse files
authored
Update index.rst
Add link to sources to set GTDBTK_DATA_PATH
1 parent 8448407 commit 88e3353

File tree

1 file changed

+11
-0
lines changed

1 file changed

+11
-0
lines changed

docs/src/installing/index.rst

Lines changed: 11 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -142,6 +142,17 @@ To create an archive from the GTDB-Tk release data parts:
142142
You can find the gtdbtk_r226_data.tar.gz.part_* files under:
143143
https://data.ace.uq.edu.au/public/gtdb/data/releases/release226/226.0/auxillary_files/gtdbtk_package/split_package/
144144

145+
**Alias the GTDB-Tk reference data:**
146+
147+
GTDB-Tk requires an environment variable named ``GTDBTK_DATA_PATH`` to be set to the directory
148+
containing the unarchived reference data. This is documented under:
149+
150+
- :ref:`pip installation <installing/pip#step-3-download-and-alias-the-gtdb-tk-reference-data>`
151+
- :ref:`Bioconda installation <installing/bioconda#step-3-download-and-alias-the-gtdb-tk-reference-data>`
152+
- :ref:`Docker installation <installing/docker>`
153+
154+
155+
145156

146157
.. note:: Note that different versions of the GTDB release data may not run on all versions of GTDB-Tk, check the supported versions!
147158

0 commit comments

Comments
 (0)