-
Notifications
You must be signed in to change notification settings - Fork 97
Open
Labels
errorHelp required for a GTDB-Tk error.Help required for a GTDB-Tk error.next versionUpcoming feature/fix in staging branch.Upcoming feature/fix in staging branch.
Description
Hi,
After a first execution, GTDB-tk v2.6.1 crashes when using the same output directory without cleaning it.
Here is the logging message:
[2026-01-09 11:40:03] INFO: Using GTDB-Tk reference data version r226: /biodatabank/annot_db/gtdb/release226/
[2026-01-09 11:40:03] ERROR: Uncontrolled exit resulting from an unexpected error.
================================================================================
EXCEPTION: TypeError
MESSAGE: ANIScreenStep.__init__() got an unexpected keyword argument 'name'
________________________________________________________________________________
Traceback (most recent call last):
File "gtdbtk_python313/lib/python3.13/site-packages/gtdbtk/__main__.py", line 100, in main
gt_parser.parse_options(args)
~~~~~~~~~~~~~~~~~~~~~~~^^^^^^
File "gtdbtk_python313/lib/python3.13/site-packages/gtdbtk/main.py", line 1088, in parse_options
self.stage_logger.read_existing_steps()
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^^
File "gtdbtk_python313/lib/python3.13/site-packages/gtdbtk/files/stage_logger.py", line 168, in read_existing_steps
step_object = ANIScreenStep(**step)
TypeError: ANIScreenStep.__init__() got an unexpected keyword argument 'name'
================================================================================
Florian
Reactions are currently unavailable
Metadata
Metadata
Assignees
Labels
errorHelp required for a GTDB-Tk error.Help required for a GTDB-Tk error.next versionUpcoming feature/fix in staging branch.Upcoming feature/fix in staging branch.