Comment on test

Author: veghp

tests/test_gel_analysis.py

@@ -1,33 +1,44 @@
 """
-Basic tests to check that the core functionalities are at least running.
+Complex validation test.
 """
 
 import matplotlib
+
 matplotlib.use("Agg")
 
 import os
-from collections import OrderedDict
-from bandwitch import (ClonesObservations)
-from Bio import SeqIO, Restriction
-import pytest
+from bandwitch import ClonesObservations
 
 
 def test_complex_validation(tmpdir):
-    data_dir = os.path.join('tests', 'test_data', 'complex_validation_data')
-    records_path = os.path.join(data_dir, 'constructs_sequences.zip')
-    constructs_map_path = os.path.join(data_dir, 'constructs_map.xls')
-    digestions_map_path = os.path.join(data_dir, 'digestions_map.xls')
-    aati_zip_path = os.path.join(data_dir, 'digestion_results.zip')
+    data_dir = os.path.join("tests", "test_data", "complex_validation_data")
+    records_path = os.path.join(data_dir, "constructs_sequences.zip")
+    constructs_map_path = os.path.join(data_dir, "constructs_map.xls")
+    digestions_map_path = os.path.join(data_dir, "digestions_map.xls")
+    aati_zip_path = os.path.join(data_dir, "digestion_results.zip")
     clones = ClonesObservations.from_files(
         records_path=records_path,
         constructs_map_path=constructs_map_path,
         aati_zip_path=aati_zip_path,
-        digestions_map_path=digestions_map_path
+        digestions_map_path=digestions_map_path,
     )
     validations = clones.validate_all_clones(relative_tolerance=0.03)
     clones.plot_validations_plate_map(validations)
     clones.plot_all_validations_patterns(validations)
     partial_digest_analysis = clones.partial_digests_analysis()
     clones.plot_partial_digests_analysis(partial_digest_analysis)
     summary_table = clones.validations_summary_table(
-        validations, target=os.path.join(str(tmpdir), 'table.csv'))
+        validations, target=os.path.join(str(tmpdir), "table.csv")
+    )
+
+
+# Chosen digestions, for reference:
+# C00	EcoRI,PvuI
+# C01	EcoRI,PvuI
+# C02	EcoRI,PvuI
+# C03	EcoRI,PvuI
+# C04	EcoRI,PvuI
+# C05	EcoRI,PvuI
+# C06	AseI,EcoRI
+# C07	AseI,EcoRI
+# C08	AseI,EcoRI