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Remove print statements
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dnacauldron/Fragment/StickyEndFragment/StickyEndSeq.py

Lines changed: 0 additions & 31 deletions
Original file line numberDiff line numberDiff line change
@@ -165,17 +165,9 @@ def list_from_sequence_digestion(sequence, enzyme, linear=True):
165165
if hasattr(fragments[0], "left_end"): # Seq doesn't have this attr
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overhang_bit = fragments[0].slice_seq(end=overhang)
167167
new_fragment_seq = fragments[0].slice_seq(start=overhang)
168-
print("Ran 2")
169-
print(overhang_bit)
170-
print(new_fragment_seq)
171-
172168
else: # Seq class
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overhang_bit = fragments[0][:overhang]
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new_fragment_seq = fragments[0][overhang:]
175-
print("Ran 1")
176-
print(overhang_bit)
177-
print(new_fragment_seq)
178-
179171
last_right_end = StickyEnd(overhang_bit, right_end_sign)
180172
first_left_end = StickyEnd(overhang_bit, -right_end_sign)
181173
sticky_fragments = [
@@ -190,17 +182,8 @@ def list_from_sequence_digestion(sequence, enzyme, linear=True):
190182
f.slice_seq(end=overhang),
191183
f.slice_seq(start=overhang),
192184
)
193-
print("Ran 4")
194-
print(overhang_bit)
195-
print(new_fragment_seq)
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else: # Seq class
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overhang_bit, new_fragment_seq = f[:overhang], f[overhang:]
198-
print("Ran 3")
199-
print(type(f))
200-
print(f)
201-
print(type(overhang_bit))
202-
print(overhang_bit)
203-
print(new_fragment_seq)
204187
sticky_fragments[-1].right_end = StickyEnd(overhang_bit, right_end_sign)
205188
new_fragment = StickyEndSeq(
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new_fragment_seq, left_end=StickyEnd(overhang_bit, -right_end_sign),
@@ -216,15 +199,8 @@ def list_from_sequence_digestion(sequence, enzyme, linear=True):
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f.slice_seq(end=-overhang),
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f.slice_seq(start=-overhang),
218201
)
219-
print("Ran 6")
220-
print(overhang_bit)
221-
print(new_fragment_seq)
222202
else: # Seq class
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new_fragment_seq, overhang_bit = f[:-overhang], f[-overhang:]
224-
print("Ran 5")
225-
print(overhang_bit)
226-
print(new_fragment_seq)
227-
228204
right_end = StickyEnd(overhang_bit, right_end_sign)
229205
new_fragment = StickyEndSeq(
230206
new_fragment_seq, left_end=left_end, right_end=right_end
@@ -237,16 +213,9 @@ def list_from_sequence_digestion(sequence, enzyme, linear=True):
237213
fragments[-1].slice_seq(end=-overhang),
238214
fragments[-1].slice_seq(start=-overhang),
239215
)
240-
print("Ran 8")
241-
print(overhang_bit)
242-
print(new_fragment_seq)
243216
else: # StickyEndSeq instance passed (see above)
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new_fragment_seq = fragments[-1][:-overhang]
245218
overhang_bit = fragments[-1][-overhang:]
246-
print("Ran 7")
247-
print(overhang_bit)
248-
print(new_fragment_seq)
249-
250219
first_left_end = StickyEnd(overhang_bit, -right_end_sign)
251220
last_right_end = StickyEnd(overhang_bit, right_end_sign)
252221
sticky_fragments[0].left_end = first_left_end

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