@@ -165,17 +165,9 @@ def list_from_sequence_digestion(sequence, enzyme, linear=True):
165165 if hasattr (fragments [0 ], "left_end" ): # Seq doesn't have this attr
166166 overhang_bit = fragments [0 ].slice_seq (end = overhang )
167167 new_fragment_seq = fragments [0 ].slice_seq (start = overhang )
168- print ("Ran 2" )
169- print (overhang_bit )
170- print (new_fragment_seq )
171-
172168 else : # Seq class
173169 overhang_bit = fragments [0 ][:overhang ]
174170 new_fragment_seq = fragments [0 ][overhang :]
175- print ("Ran 1" )
176- print (overhang_bit )
177- print (new_fragment_seq )
178-
179171 last_right_end = StickyEnd (overhang_bit , right_end_sign )
180172 first_left_end = StickyEnd (overhang_bit , - right_end_sign )
181173 sticky_fragments = [
@@ -190,17 +182,8 @@ def list_from_sequence_digestion(sequence, enzyme, linear=True):
190182 f .slice_seq (end = overhang ),
191183 f .slice_seq (start = overhang ),
192184 )
193- print ("Ran 4" )
194- print (overhang_bit )
195- print (new_fragment_seq )
196185 else : # Seq class
197186 overhang_bit , new_fragment_seq = f [:overhang ], f [overhang :]
198- print ("Ran 3" )
199- print (type (f ))
200- print (f )
201- print (type (overhang_bit ))
202- print (overhang_bit )
203- print (new_fragment_seq )
204187 sticky_fragments [- 1 ].right_end = StickyEnd (overhang_bit , right_end_sign )
205188 new_fragment = StickyEndSeq (
206189 new_fragment_seq , left_end = StickyEnd (overhang_bit , - right_end_sign ),
@@ -216,15 +199,8 @@ def list_from_sequence_digestion(sequence, enzyme, linear=True):
216199 f .slice_seq (end = - overhang ),
217200 f .slice_seq (start = - overhang ),
218201 )
219- print ("Ran 6" )
220- print (overhang_bit )
221- print (new_fragment_seq )
222202 else : # Seq class
223203 new_fragment_seq , overhang_bit = f [:- overhang ], f [- overhang :]
224- print ("Ran 5" )
225- print (overhang_bit )
226- print (new_fragment_seq )
227-
228204 right_end = StickyEnd (overhang_bit , right_end_sign )
229205 new_fragment = StickyEndSeq (
230206 new_fragment_seq , left_end = left_end , right_end = right_end
@@ -237,16 +213,9 @@ def list_from_sequence_digestion(sequence, enzyme, linear=True):
237213 fragments [- 1 ].slice_seq (end = - overhang ),
238214 fragments [- 1 ].slice_seq (start = - overhang ),
239215 )
240- print ("Ran 8" )
241- print (overhang_bit )
242- print (new_fragment_seq )
243216 else : # StickyEndSeq instance passed (see above)
244217 new_fragment_seq = fragments [- 1 ][:- overhang ]
245218 overhang_bit = fragments [- 1 ][- overhang :]
246- print ("Ran 7" )
247- print (overhang_bit )
248- print (new_fragment_seq )
249-
250219 first_left_end = StickyEnd (overhang_bit , - right_end_sign )
251220 last_right_end = StickyEnd (overhang_bit , right_end_sign )
252221 sticky_fragments [0 ].left_end = first_left_end
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