publish.yml

name: Publish to PyPI

on:
  release:
    types: [created]

jobs:
  test:
    runs-on: ubuntu-24.04

    steps:
      - uses: actions/checkout@v4
      - name: Set up Python
        uses: actions/setup-python@v5
        with:
          python-version: "3.12"
      - name: Install
        run: |
          pip install pytest
          pip install bokeh pandas Biopython bcbio-gff
          pip install -e .
      - name: Test
        run: |
          python -m pytest
  deploy:
    runs-on: ubuntu-24.04
    needs: [test]
    permissions:
      id-token: write
    steps:
    - uses: actions/checkout@v4
    - name: Set up Python
      uses: actions/setup-python@v5
      with:
        python-version: '3.12'
        cache: pip
        cache-dependency-path: '**/pyproject.toml'
    - name: Install dependencies
      run: |
        pip install setuptools wheel build
    - name: Build
      run: |
        python -m build
    - name: Publish
      uses: pypa/gh-action-pypi-publish@release/v1