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Soslow

Codebase for Actimetry Core in the Soslow study.

Guidelines

  • Wear Detection
    • use 15 second level files to detect wear status
    • use vector magnitude
  • Valid Day
    • During 0500 - 2359, at least 600 minutes of wearing
  • Sleep Detection
    • aggregate to 60 second level and then run sleep algorithm
    • map the results back to 15 second level data
    • use axis1
    • use settings for youth
  • Physical Activity
    • use 15 second level files to mark activity levels
    • use vector magnitude
    • though cutpoints are for 60 second level observations, divide it by 4 to fit 15 second files

File Structure

| /scripts/
   | process_data.R
   | graphs.R
   | tables.R
   | statistical_analysis.R

R Packages

  • PhysicalActivity 0.2-2
  • PhysActBedRest 1.0
  • RSQLite 2.1.1
  • ggplot2 3.1.0