Entity Viewer Sidebar Payload

type Option = {
    "value": string,
    "label": string
};

type ExternalLink = {
    "label": string | null,
    "url": string,
    "anchor_text": string
}

type Assembly = {
    "species_name": string,
    "assembly_name": string,
    "stable_id": string
}

type Allele = {
    "allele_name": string,
    "stable_id": string
}

enum DataSetType{
    "Current assembly",
    "Gene",
    "Protein"
}

type DataSet = {
    "type": DataSetType,
    "stable_id": string
}

type Homeologue = {
    "type": string,
    "stable_id": string
}

type Strain = {
    "strain_name": string,
    "stable_id": string
}

type AdditionalAttribute = {
    description,
    displayName,
    code
}


type EntityViewerSidebarResponse = {
    "gene_symbol": string,
    "gene_name": string,
    "stable_id" : string,
    "dbprimary_acc" : string, // HGNC:1101
    "synonyms": string[],
    "additional_attributes" : AdditionalAttribute[],
    "function": {
        "description": string | null,
        "provider" : ExternalLink
    },
    "sequence": {
        "transcripts" : Option[],
        "gene": Option[], // Find out if there is any indication to enable these options
        "tark_url" : ExternalLink
    },
    "other_data_sets": DataSet[],
    "other_assemblies": {
        "assemblies": Assembly[],
        "strains": Strain[]
    },
    "homeologues": Homeologue[],
    "alternative_alleles" : Allele[],
    "external_references" : ExternalLink[]

}

Query to GraphQL:

query Gene($id: String!) { gene(stable_id: $id) { name xref { dbprimary_acc display_label external_synonym { synonym } external_db { db_name id ??? } } gene_attrib { value, attribute_type } function { description, provider_id } assembly_name gene_archive { // ??? - Other assemblies with this Gene & current assembly mapping_session { new_assembly } } alt_allele { Gene }

Strains ??? 

Homeologues ???

}

} }

Questions to ask Kieron:

• Display name for biotypes
• A way to retrieve alternative assemblies { assemblies -> gene_id => {species, name}}
• Specifically retrieve all the external references from the metadata