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1 parent c3490b2 commit 01c1330Copy full SHA for 01c1330
workflows/seperate_assemblies/Snakefile
@@ -139,8 +139,6 @@ for assembly_file in glob.glob("assembly/megahit/*/*/final.contigs.fa*"):
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config["assemblies"] = config["concoct_rules"]['assemblies']
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-print(config['megahit_rules']['samples'].keys())
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-
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# add 10K cutup as references for bowtie2 to map against
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config["bowtie2_rules"].setdefault("references", {}).update({a + "_10K": "binning/concoct/{a}/cutup/contigs_10K.fasta.gz".format(a=a) for a in config["concoct_rules"]["assemblies"]})
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config["kallisto_rules"]["references"] = config["bowtie2_rules"]["references"]
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