NEKO v1.0.2 (#2369)

/ᐠ. ｡.ᐟ\ᵐᵉᵒʷˎˊ˗

Author: njansson

.github/workflows/check_lint.yml

@@ -145,6 +145,11 @@ jobs:
               continue
             fi
 
+            # If the file is the `src/adt/htable.f90` file, skip it.
+            if [[ $file == "src/adt/htable.f90" ]]; then
+              continue
+            fi
+
             printf "\t- $file"
             score=$(flint score -r flinter_rc.yml $(realpath $file) 2> /dev/null |
                   grep -oP '(?<=\>\|)[^\|\<]+(?=\|\<)')

CHANGELOG.md

@@ -1,6 +1,14 @@
 # Changelog
 
 ## Develop
+
+- Rework hash table iterators, significantly faster (O(tsize) => O(entries)
+- Remove redundant directory in `site-packages` when installing pyneko
+- Add min/max operations when applying strong boundary conditions for the
+  scalar, mimicing the procedure for the fluid. Needed with meshes where an
+  element touches the boundary with only an edge.
+- Fix `user` scalar boundary conditions only being applied once in the beginning
+  of the simulation.
 - Fix `mean_field_output_t` initialization, causing `start_time` to not be
   respected by the `user_stats` simulation component.
 - Fix field assignment operator to correctly handle name assignment only when

configure.ac

@@ -1,5 +1,5 @@
 AC_PREREQ([2.69])
-AC_INIT([neko],[1.0.1])
+AC_INIT([neko],[1.0.2])
 AM_INIT_AUTOMAKE([foreign subdir-objects])
 AM_MAINTAINER_MODE
 AC_CONFIG_MACRO_DIR([m4])
@@ -376,6 +376,7 @@ FCFLAGS="$FCFLAGS $NEKO_PKG_FCFLAGS"
 
 AC_CONFIG_FILES([Makefile\
         src/Makefile\
+        src/python/Makefile\
         tests/unit/Makefile\
         src/comm/comm.F90\
         src/config/neko_config.f90\

doc/pages/user-guide/case-file.md

@@ -213,8 +213,8 @@ the governing equations to feature the full viscous stress tensor, as required
 for a variable viscosity field.
 
 Note that the full viscous stress tensor requires the equations for the 3
-velocity components to be solved in a coupled manner. Therefore, the `cpldcg`
-solver should be used for velocity.
+velocity components to be solved in a coupled manner. Therefore, the `coupled_cg`
+(or `fused_coupled_cg`) solver should be used for velocity.
 
 ### Boundary conditions {#case-file_fluid-boundary-conditions}
 The optional `boundary_conditions` keyword can be used to specify boundary

examples/api/pyneko/cylinder.case

@@ -6,7 +6,7 @@
     "output_boundary": true,
     "output_checkpoints": true,
     "checkpoint_control": "simulationtime",
-    "checkpoint_value": 50,
+    "checkpoint_value": 50.0,
     "time": {
         "end_time": 200.0,
         "variable_timestep": true,
@@ -20,7 +20,7 @@
     },
     "fluid": {
         "scheme": "pnpn",
-        "Re": 200,
+        "Re": 200.0,
         "initial_condition": {
             "type": "user"
         },
@@ -82,13 +82,13 @@
       "compute_value": 10,
       "zone_id": 7,
       "zone_name": "Cylinder",
-      "center": [0,0,0]
+      "center": [0.0, 0.0, 0.0]
     },
     {
       "type": "fluid_stats",
       "output_control": "simulationtime",
-      "output_value": 10,
-      "start_time": 50,
+      "output_value": 10.0,
+      "start_time": 50.0,
       "compute_control": "tsteps",
       "compute_value": 10,
       "avg_direction": "z",

src/.depends

@@ -34,7 +34,7 @@ sem/space.lo : sem/space.f90 math/math.lo math/mxm_wrapper.lo math/tensor.lo mat
 sem/map_1d.lo : sem/map_1d.f90 math/math.lo common/utils.lo math/vector.lo math/matrix.lo field/field_list.lo sem/coef.lo comm/comm.lo device/device.lo mesh/mesh.lo gs/gather_scatter.lo sem/dofmap.lo sem/space.lo config/num_types.lo config/neko_config.lo 
 sem/map_2d.lo : sem/map_2d.f90 io/fld_file_data.lo comm/comm.lo device/device.lo field/field.lo math/math.lo common/utils.lo math/vector.lo sem/coef.lo field/field_list.lo mesh/mesh.lo gs/gather_scatter.lo sem/map_1d.lo sem/dofmap.lo config/num_types.lo config/neko_config.lo 
 sem/dofmap.lo : sem/dofmap.f90 mesh/hex.lo mesh/quad.lo mesh/element.lo math/math.lo device/device.lo math/tensor.lo math/fast3d.lo common/utils.lo config/num_types.lo adt/tuple.lo sem/space.lo mesh/mesh.lo config/neko_config.lo 
-sem/coef.lo : sem/coef.f90 common/utils.lo device/device.lo math/mxm_wrapper.lo sem/bcknd/device/device_coef.lo math/bcknd/device/device_math.lo mesh/mesh.lo math/math.lo sem/space.lo sem/dofmap.lo config/num_types.lo config/neko_config.lo gs/gs_ops.lo gs/gather_scatter.lo 
+sem/coef.lo : sem/coef.f90 comm/comm.lo common/utils.lo device/device.lo math/mxm_wrapper.lo sem/bcknd/device/device_coef.lo math/bcknd/device/device_math.lo mesh/mesh.lo math/math.lo sem/space.lo sem/dofmap.lo config/num_types.lo config/neko_config.lo gs/gs_ops.lo gs/gather_scatter.lo 
 sem/cpr.lo : sem/cpr.f90 math/mxm_wrapper.lo sem/dofmap.lo common/log.lo sem/coef.lo mesh/mesh.lo math/tensor.lo math/math.lo sem/space.lo field/field.lo config/num_types.lo 
 common/time_interpolator.lo : common/time_interpolator.f90 math/fast3d.lo common/utils.lo math/math.lo math/bcknd/device/device_math.lo config/neko_config.lo field/field_series.lo field/field.lo config/num_types.lo 
 sem/interpolation.lo : sem/interpolation.f90 common/utils.lo sem/space.lo math/bcknd/cpu/tensor_cpu.lo math/tensor.lo math/fast3d.lo device/device.lo config/num_types.lo config/neko_config.lo 

src/Makefile.am

@@ -654,8 +654,7 @@ depend:
 endif
 
 if ENABLE_PYTHON
-nobase_python_PYTHON = python/pyneko/__init__.py\
-		       python/pyneko/intf.py
+SUBDIRS = python
 endif
 
 # Note we need to list any headers etc here for the dist. script