Merge pull request #1653 from ExtremeFLOW/release/0.9

NEKO v0.9.1

Author: njansson

.github/workflows/check_nvidia.yml

@@ -32,13 +32,13 @@ jobs:
               curl https://developer.download.nvidia.com/hpc-sdk/ubuntu/DEB-GPG-KEY-NVIDIA-HPC-SDK | sudo gpg --dearmor -o /usr/share/keyrings/nvidia-hpcsdk-archive-keyring.gpg
               echo 'deb [signed-by=/usr/share/keyrings/nvidia-hpcsdk-archive-keyring.gpg] https://developer.download.nvidia.com/hpc-sdk/ubuntu/amd64 /' | sudo tee /etc/apt/sources.list.d/nvhpc.list
               sudo apt-get update -y
-              sudo apt-get install -y nvhpc-24-7
+              sudo apt-get install -y nvhpc-24-11
               NVARCH=`uname -s`_`uname -m`
               export NVARCH
               NVCOMPILERS=/opt/nvidia/hpc_sdk
               export NVCOMPILERS
-              PATH=$NVCOMPILERS/$NVARCH/24.7/compilers/bin:$PATH; export PATH
-              export PATH=$NVCOMPILERS/$NVARCH/24.7/comm_libs/mpi/bin:$PATH
+              PATH=$NVCOMPILERS/$NVARCH/24.11/compilers/bin:$PATH; export PATH
+              export PATH=$NVCOMPILERS/$NVARCH/24.11/comm_libs/mpi/bin:$PATH
               printenv >> $GITHUB_ENV
               echo "os-version=$(lsb_release -ds | tr " " -)" >> $GITHUB_OUTPUT
 
@@ -98,7 +98,7 @@ jobs:
         run: |
           git apply patches/nvhpc_bge.patch
           ./regen.sh
-          ./configure FC=${FC} FCFLAGS="-O3" --enable-real=${RP} --with-cuda=/opt/nvidia/hpc_sdk/Linux_x86_64/24.7/cuda/
+          ./configure FC=${FC} FCFLAGS="-O3" --enable-real=${RP} --with-cuda=/opt/nvidia/hpc_sdk/Linux_x86_64/24.11/cuda/
           make
 
       - name: Dist (CPU backend)
@@ -122,5 +122,5 @@ jobs:
           tar xf neko-*.tar.gz -C releng
           cd releng/neko-*
           patch -u src/common/signal.f90 -i patches/nvhpc_bge.patch
-          ./configure FC=${FC} FCFLAGS="-O3" --enable-real=${RP} --with-cuda=/opt/nvidia/hpc_sdk/Linux_x86_64/24.7/cuda/
+          ./configure FC=${FC} FCFLAGS="-O3" --enable-real=${RP} --with-cuda=/opt/nvidia/hpc_sdk/Linux_x86_64/24.11/cuda/
           make -j $(nproc)

configure.ac

@@ -1,5 +1,5 @@
 AC_PREREQ([2.69])
-AC_INIT([neko],[0.9.0])
+AC_INIT([neko],[0.9.1])
 AM_INIT_AUTOMAKE([foreign subdir-objects])
 AM_MAINTAINER_MODE
 AC_CONFIG_MACRO_DIR([m4])

examples/hemi/hemi.nmsh

@@ -450,6 +450,10 @@ subroutine gs_init_mapping(gs)
           end if
        end if
     end do
+
+    ! Clear local dofmap table
+    call dm%clear()
+
     if (lz .gt. 1) then
        !
        ! Setup mapping for dofs on edges
@@ -654,6 +658,10 @@ subroutine gs_init_mapping(gs)
           end if
        end do
     end if
+
+    ! Clear local dofmap table
+    call dm%clear()
+
     !
     ! Setup mapping for dofs on facets
     !

src/gs/gather_scatter.f90

@@ -189,7 +189,7 @@ end subroutine ksp_t_free
      !! @param monitor Enable/disable monitoring, optional.
      module subroutine krylov_solver_factory(object, n, type_name, &
           max_iter, abstol, M, monitor)
-       class(ksp_t), allocatable, target, intent(inout) :: object
+       class(ksp_t), allocatable, intent(inout) :: object
        integer, intent(in), value :: n
        character(len=*), intent(in) :: type_name
        integer, intent(in) :: max_iter

src/krylov/krylov.f90

@@ -76,7 +76,7 @@
   !! @param monitor Enable/disable residual history, optional.
   module subroutine krylov_solver_factory(object, n, type_name, &
        max_iter, abstol, M, monitor)
-    class(ksp_t), allocatable, target, intent(inout) :: object
+    class(ksp_t), allocatable, intent(inout) :: object
     integer, intent(in), value :: n
     character(len=*), intent(in) :: type_name
     integer, intent(in) :: max_iter

src/krylov/krylov_fctry.f90

@@ -68,7 +68,7 @@ end subroutine pc_update
   interface
      !> Create a preconditioner
      module subroutine precon_factory(pc, type_name)
-       class(pc_t), target, allocatable, intent(inout) :: pc
+       class(pc_t),  allocatable, intent(inout) :: pc
        character(len=*), intent(in) :: type_name
      end subroutine precon_factory
 

src/krylov/precon.f90

@@ -51,7 +51,7 @@
 
   !> Create a preconditioner
   module subroutine precon_factory(pc, type_name)
-    class(pc_t), target, allocatable, intent(inout) :: pc
+    class(pc_t), allocatable, intent(inout) :: pc
     character(len=*), intent(in) :: type_name
     character(len=:), allocatable :: type_string
 

src/krylov/precon_fctry.f90

@@ -114,7 +114,7 @@ end subroutine les_model_free
      !! @param coef SEM coefficients.
      !! @param json A dictionary with parameters.
      module subroutine les_model_factory(object, type_name, dofmap, coef, json)
-       class(les_model_t), allocatable, target, intent(inout) :: object
+       class(les_model_t), allocatable, intent(inout) :: object
        character(len=*), intent(in) :: type_name
        type(dofmap_t), intent(in) :: dofmap
        type(coef_t), intent(in) :: coef

src/les/les_model.f90

@@ -53,7 +53,7 @@
   !! @param coef SEM coefficients.
   !! @param json A dictionary with parameters.
   module subroutine les_model_factory(object, type_name, dofmap, coef, json)
-    class(les_model_t), allocatable, target, intent(inout) :: object
+    class(les_model_t), allocatable, intent(inout) :: object
     character(len=*), intent(in) :: type_name
     type(dofmap_t), intent(in) :: dofmap
     type(coef_t), intent(in) :: coef