envision-classifier/pyproject.toml at main · EyeACT/envision-classifier · GitHub

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[tool.poetry]

name = "envision-classifier"
version = "0.1.2"
description = "Few-shot classifier for detecting eye imaging datasets"

packages = [{ include = "envision_classifier" }]

license = "MIT"
authors = [
    "FAIR Data Innovations Hub <contact@fairdataihub.org>",
    "James O'Neill <joneill@calmi2.org>",
]

readme = "README.md"
homepage = "https://github.com/EyeACT/envision-classifier"
documentation = "https://envision-classifier.readthedocs.io"
repository = "https://github.com/EyeACT/envision-classifier"

keywords = [
    "eye imaging",
    "ophthalmology",
    "OCT",
    "fundus",
    "retina",
    "machine learning",
    "dataset discovery",
    "classification",
    "setfit",
    "few-shot",
    "fair-data",
]
classifiers = [
    "Development Status :: 4 - Beta",
    "Intended Audience :: Science/Research",
    "Intended Audience :: Developers",
    "License :: OSI Approved :: MIT License",
    "Natural Language :: English",
    "Operating System :: OS Independent",
    "Programming Language :: Python",
    "Programming Language :: Python :: 3",
    "Programming Language :: Python :: 3.10",
    "Programming Language :: Python :: 3.11",
    "Programming Language :: Python :: 3.12",
    "Topic :: Scientific/Engineering :: Medical Science Apps.",
    "Topic :: Scientific/Engineering :: Image Processing",
]

[tool.poetry.dependencies]

python = "^3.10"

click = "^8.0"

# ML/AI dependencies
torch = ">=2.0.0"
transformers = ">=4.35.0"
setfit = ">=1.0.0"
datasets = ">=2.14.0"
scikit-learn = ">=1.3.0"
huggingface-hub = ">=0.20.0"

[tool.poetry.group.dev.dependencies]

# Formatters
black = "^22.1"
tomli = "*"
isort = "^5.10"

# Linters
mypy = "^1.0"
pydocstyle = "^6.1"
pylint = "~2.15"
wrapt = "*"

# Testing
pytest = "^7.1"
pytest-describe = "^2.0"
pytest-cov = "^3.0"

# Documentation
mkdocs = "~1.3"
pygments = "^2.11.1"

# Tooling
poethepoet = "^0.20.0"

[tool.poetry.scripts]

envision-classifier = "envision_classifier.cli:cli"

[tool.poe.tasks]

docs = "mkdocs serve"
format_with_isort = "isort envision_classifier tests"
format_with_black = "black envision_classifier tests"
format = ["format_with_isort", "format_with_black"]
typecheck = "mypy envision_classifier tests"
pylint = "pylint envision_classifier tests --rcfile=.pylint.ini"
precommit = ["format", "typecheck", "pylint"]
test = "pytest -rx -W ignore::DeprecationWarning"

[tool.black]

quiet = true
line-length = 100

[tool.isort]

profile = "black"
line_length = 100

[tool.mypy]

ignore_missing_imports = true
no_implicit_optional = true
check_untyped_defs = true
cache_dir = ".cache/mypy/"

[tool.pytest.ini_options]

addopts = """
--strict-markers

-r sxX
--show-capture=log

--cov-report=html
--cov-report=term-missing:skip-covered
--no-cov-on-fail
"""

cache_dir = ".cache/pytest/"

markers = []

[build-system]

requires = ["poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"