Merge pull request #481 from FAIRmat-NFDI/integrate-pynxtools-igor

Integrate pynxtools igor

Author: lukaspie

.github/workflows/plugin_test.yaml

@@ -29,6 +29,9 @@ jobs:
           - plugin: pynxtools-em
             branch: main
             tests_to_run: tests/.
+          - plugin: pynxtools-igor
+            branch: main
+            tests_to_run: tests/.    
           - plugin: pynxtools-mpes
             branch: main
             tests_to_run: tests/.

docs/reference/plugins.md

@@ -1,5 +1,5 @@
 # Plugins
-There are a number of plugins available for pynxtools that are maintained within FAIRmat. These are extensions of pynxtools used for reading data of specific experimental techniques.
+There are a number of plugins available for pynxtools that are maintained within FAIRmat. These are extensions of pynxtools used for reading data of specific experimental techniques and/or file formats.
 
 ### Photoemission spectroscopy
 - [**pynxtools-mpes**](https://github.com/FAIRmat-NFDI/pynxtools-mpes): A reader for multi-dimensional photoelectron spectroscopy (MPES) data.
@@ -20,8 +20,12 @@ There are a number of plugins available for pynxtools that are maintained within
 - [**pynxtools-stm**](https://github.com/FAIRmat-NFDI/pynxtools-stm): A reader for scanning tunneling microscopy (SPM) and spectroscopy (STS) data.
 
 ### X-ray diffraction
-- [**pynxtools-xrd**](https://github.com/FAIRmat-NFDI/pynxtools-raman): A reader for X-ray diffraction data.
+- [**pynxtools-xrd**](https://github.com/FAIRmat-NFDI/pynxtools-xrd): A reader for X-ray diffraction data.
+
 ### Others
+- [**pynxtools-igor**](https://github.com/FAIRmat-NFDI/pynxtools-igor): A general reader for [Igor Pro](https://www.wavemetrics.com/) Binary Wave data. Documentation can be found [here](https://fairmat-nfdi.github.io/pynxtools-igor/).
+
+
 
 
 ## Installation

pyproject.toml

@@ -64,7 +64,7 @@ dev = [
     "pre-commit",
 ]
 convert = [
-    "pynxtools[apm,em,mpes,xps,stm,xrd,ellips,raman]",
+    "pynxtools[apm,ellips,em,igor,mpes,raman,stm,xps,xrd]",
 ]
 
 apm = [
@@ -76,6 +76,9 @@ ellips = [
 em = [
     "pynxtools-em>=0.3.1",
 ]
+igor = [
+    "pynxtools-igor>=0.1.0",
+]
 mpes = [
     "pynxtools-mpes>=0.2.1",
 ]

src/pynxtools/nomad/examples/iv_temp/README.md

@@ -4,7 +4,7 @@
 
 This is an example of a PID controlled sensor sweep scan. The temperature is set using a PID controller. Then, for the set temperature, a voltage sweep is performed. For each of the voltages, the current is measured. This is repeated for a given list of temperatures.
 
-This specific data was captured using a Bluesky controlled system. This was then saved into a binary file using Pickle. This example illustrates how such a dataset could be converted using the [`JSONMapReader`](https://github.com/FAIRmat-NFDI/pynxtools/tree/master/src/pynxtools/dataconverter/readers/json_map) of the NOMAD plugin [`pynxtools`](https://github.com/FAIRmat-NFDI/pynxtools-xps).
+This specific data was captured using a Bluesky controlled system. This was then saved into a binary file using Pickle. This example illustrates how such a dataset could be converted using the [`JSONMapReader`](https://github.com/FAIRmat-NFDI/pynxtools/tree/master/src/pynxtools/dataconverter/readers/json_map) of the NOMAD plugin [`pynxtools`](https://github.com/FAIRmat-NFDI/pynxtools).
 The data is mapped on to a Nexus application definition for temperature-dependent IV curve measurements, [NXiv_temp](https://fairmat-nfdi.github.io/nexus_definitions/classes/contributed_definitions/NXiv_temp.html).
 
 # Viewing uploaded data