generate reference log file

Author: Lukas Pielsticker

tests/data/nexus/Ref_nexus_test.log

@@ -561,7 +561,6 @@ DEBUG - classpath: ['NXentry', 'NX_CHAR']
 DEBUG - classes:
 NXentry.nxdl.xml:/entry_identifier
 DEBUG - <<OPTIONAL>>
-DEBUG - DEPRECATED - Use the field :ref:`identifier_entry </NXentry/identifier_entry-field>` instead.
 DEBUG - documentation (NXentry.nxdl.xml:/entry_identifier):
 DEBUG - Unique identifier for the measurement, defined by the facility.
 DEBUG - ===== FIELD (//entry/experiment_identifier): <HDF5 dataset "experiment_identifier": shape (), type "|O">
@@ -570,7 +569,6 @@ DEBUG - classpath: ['NXentry', 'NX_CHAR']
 DEBUG - classes:
 NXentry.nxdl.xml:/experiment_identifier
 DEBUG - <<OPTIONAL>>
-DEBUG - DEPRECATED - Use the field :ref:`identifier_experiment </NXentry/identifier_experiment-field>` instead.
 DEBUG - documentation (NXentry.nxdl.xml:/experiment_identifier):
 DEBUG - 
 			Unique identifier for the experiment,
@@ -990,7 +988,7 @@ DEBUG -
 
         Note that ``incident_wavelength``, ``incident_energy``, and related fields can be a scalar values or arrays, depending on the use case.
         To support these use cases, the explicit dimensionality of these fields is not specified, but it can be inferred
-        by the presense of and shape of accompanying fields, such as incident_wavelength_weights for a polychromatic beam.
+        by the presence of and shape of accompanying fields, such as incident_wavelength_weights for a polychromatic beam.
 
 DEBUG - documentation (NXobject.nxdl.xml:):
 DEBUG - 
@@ -1110,7 +1108,7 @@ DEBUG -
 
         Note that ``incident_wavelength``, ``incident_energy``, and related fields can be a scalar values or arrays, depending on the use case.
         To support these use cases, the explicit dimensionality of these fields is not specified, but it can be inferred
-        by the presense of and shape of accompanying fields, such as incident_wavelength_weights for a polychromatic beam.
+        by the presence of and shape of accompanying fields, such as incident_wavelength_weights for a polychromatic beam.
 
 DEBUG - documentation (NXobject.nxdl.xml:):
 DEBUG -