📌 Pin upgraded Python requirements

Author: shnizzedy

CHANGELOG.md

@@ -18,23 +18,47 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### Removed dependencies
 
-- bids-validator
-- Node
-- NVM
-- simplejson
-- wxpython
-- yamlordereddictloader
+- `bids-validator`
+- `Node`
+- `NVM`
+- `simplejson`
+- `wxpython`
+- `yamlordereddictloader`
 
 ### Upgraded dependencies
 
 - `AFNI` 21.1.00 'Domitian' → 23.0.07 'Commodus'
 - `ANTs` 2.3.3 'Leptomyrmex' → 2.4.3 'Emplastus'
+- `boto3` 1.7.37 → 1.26.91
+- `click` 6.7 → 8.1.3
+- `configparser` 3.7.4 → 5.3.0
 - `FSL` 5.0.10 (5.0.9) → 6.0.6 (6.0.4:ddd0a010c)
+- `future` 0.16.0 → 0.18.3
 - `ICA-AROMA` 0.4.3-beta → 0.4.4-beta
-- `Python` 3.7.13 → 3.10.10 (holding back from 3.11 for `sdcflows`, `torch`, and `torchvision`)
+- `INDI-Tools` 0.0.7@`main` → 0.0.7@`998c246`
+- `joblib` 1.0.1 → 1.2.0
+- `matplotlib` 3.1.3 → 3.7.1
+- `networkx` 2.4 → 3.0
+- `nibabel` 3.0.1 → 5.0.1
+- `nilearn` 0.4.1 → 0.10.0
+- `nipype` 1.5.1 → 1.8.5
+- `numpy` 1.21.0 → 1.24.2
+- `pandas` 1.0.5 → 1.5.3
+- `patsy` 0.5.0 → 0.5.3
+- `prov` 1.5.2 → 2.0.0
+- `psutil` 5.6.6 → 5.9.4
+- `pybids` 0.15.1 → 0.15.6
 - `PyPEER` 1.0@`main` → 1.1@`6965d2b`
-- `Torch` 1.2.0+cu92 → 1.13.1
+- `Python` 3.7.13 → 3.10.10 (holding back from 3.11 for `sdcflows`, `torch`, and `torchvision`)
+- `python-dateutil` 2.7.3 → 2.8.2
+- `PyYAML` 5.4 → 6.0
+- `requests` 2.21.0 → 2.28.2
+- `scipy` 1.6.3 → 1.10.1
+- `sdcflows` 2.0.5 → 2.4.0
+- `torch` 1.2.0+cu92 → 1.13.1
 - `torchvision` 0.4.0+cu92 → 0.14.1
+- `traits` 4.6.0 → 6.3.2
+- `voluptuous` 0.12.0 → 0.13.1
 - `wb_command` neurodebian latest → 1.5.0
 
 ## [1.8.5]

CPAC/info.py

@@ -169,36 +169,36 @@ def get_cpac_gitversion():
 VERSION = __version__
 STATUS = 'stable'
 REQUIREMENTS = [
-    "boto3",
-    "click",
-    "configparser",
-    "cython",
-    "future",
+    "boto3==1.26.91",
+    "ciftify==2.3.3",
+    "click==8.1.3",
+    "configparser==5.3.0",
+    "cython==0.29.34",
+    "future==0.18.3",
     "INDI-Tools @ git+https://[email protected]/FCP-INDI/INDI-Tools.git#egg=INDI-Tools",
-    "lockfile",
-    "joblib",
-    "matplotlib",
-    "networkx",
-    "nibabel",
-    "nilearn",
-    "nipype",
-    "nose",
-    "numpy",
-    "pandas",
-    "pathvalidate",
-    "patsy",
-    "prov",
-    "psutil",
-    "pybids",
-    "pygraphviz",
+    "joblib==1.2.0",
+    "lockfile==0.12.2",
+    "matplotlib==3.7.1",
+    "networkx==3.0",
+    "nibabel==5.0.1",
+    "nilearn==0.10.0",
+    "nipype==1.8.5",
+    "nose==1.3.7",
+    "numpy==1.24.2",
+    "pandas==1.5.3",
+    "pathvalidate==2.5.2",
+    "patsy==0.5.3",
+    "prov==2.0.0",
+    "psutil==5.9.4",
+    "PyBASC==0.6.1",
+    "pybids==0.15.6",
+    "pygraphviz==1.10",
     "PyPEER @ git+https://[email protected]/ChildMindInstitute/PyPEER.git@6965d2b2bea0fef824e885fec33a8e0e6bd50a97#egg=PyPEER",
-    "python-dateutil",
-    "pyyaml",
-    "scikit-learn",
-    "scipy",
-    "sdcflows",
-    "traits",
-    "PyBASC",
-    "voluptuous>=0.12.0",
-    "ciftify",
+    "python-dateutil==2.8.2",
+    "PyYAML==6.0",
+    "scikit-learn==1.2.2",
+    "scipy==1.10.1",
+    "sdcflows==2.4.0",
+    "traits==6.3.2",
+    "voluptuous==0.13.1"
 ]

requirements.txt

@@ -1,33 +1,33 @@
-boto3
-ciftify
-click
-configparser
-future
-git+https://[email protected]/FCP-INDI/INDI-Tools.git#egg=INDI-Tools
-joblib
-lockfile
-matplotlib
-networkx
-nibabel
-nilearn
-nipype
-nose
-numpy
-pandas
-pathvalidate
-patsy
-prov
-psutil
-PyBASC
-pybids
-git+https://[email protected]/ChildMindInstitute/PyPEER.git@6965d2b2bea0fef824e885fec33a8e0e6bd50a97#egg=PyPEER
-python-dateutil
-pyyaml
-requests
-scikit-learn
-scipy
-sdcflows
-torch
-torchvision
-traits
-voluptuous>=0.12.0
+boto3==1.26.91
+ciftify==2.3.3
+click==8.1.3
+configparser==5.3.0
+future==0.18.3
+INDI-Tools @ git+https://[email protected]/FCP-INDI/INDI-Tools.git@998c246c597209f06f8d5c5b92ddc2c9c1942f46
+joblib==1.2.0
+lockfile==0.12.2
+matplotlib==3.7.1
+networkx==3.0
+nibabel==5.0.1
+nilearn==0.10.0
+nipype==1.8.5
+nose==1.3.7
+numpy==1.24.2
+pandas==1.5.3
+pathvalidate==2.5.2
+patsy==0.5.3
+prov==2.0.0
+psutil==5.9.4
+PyBASC==0.6.1
+pybids==0.15.6
+PyPEER @ git+https://[email protected]/ChildMindInstitute/PyPEER.git@6965d2b2bea0fef824e885fec33a8e0e6bd50a97
+python-dateutil==2.8.2
+PyYAML==6.0
+requests==2.28.2
+scikit-learn==1.2.2
+scipy==1.10.1
+sdcflows==2.4.0
+torch==1.13.1
+torchvision==0.14.1
+traits==6.3.2
+voluptuous==0.13.1