✏️ Re: can you take a look at https://github.com/FCP-INDI/C-PAC/pull/1659/files?short_path=06572a9#diff-06572a96a58dc510037d5efa622f9bec8519bc1beab13c9f251e97e657a9d4ed

so over here the first point is correct that if the user wants to warp
tissue mask to EPI template then EPI_registration under
functional_registration should be On and the template_for_segmentation
should be EPI_template.  The second point is in order to warp tissue
mask to T1 template for this anatomical_registration should be On and
the template_for_segmentation should be T1_template.

[skip ci]

Author: tergeorge

CHANGELOG.md

@@ -21,10 +21,10 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### Changed
 - In a given pipeline configuration, segmentation probability maps and binary tissue masks are warped to template space, and those warped masks are included in the output directory
-    - if `registration_workflows['functional_registration']['EPI_registration']['run segmentation']` is `On` and  `segmentation['tissue_segmentation']['Template_Based']['template_for_segmentation']` includes `EPI_registration`
+    - if `registration_workflows['functional_registration']['EPI_registration']['run segmentation']` is `On` and `segmentation['tissue_segmentation']['Template_Based']['template_for_segmentation']` includes `EPI_Template`
 
       and/or
-    - if `registration_workflows['anatomical_registration']['run']` is `On` and
+    - if `registration_workflows['anatomical_registration']['run']` is `On` and `segmentation['tissue_segmentation']['Template_Based']['template_for_segmentation']` includes `T1_Template`
 - Renamed connectivity matrices from `*_connectome.tsv` to `*_correlations.tsv`
 - Moved some ephemeral logging statements into `pypeline.log`