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Add tissue_seg_freesurfer to pipeline stack
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CPAC/pipeline/cpac_pipeline.py

Lines changed: 2 additions & 1 deletion
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@@ -1040,7 +1040,8 @@ def build_segmentation_stack(rpool, cfg, pipeline_blocks=None):
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not rpool.check_rpool('label-WM_mask'):
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seg_blocks = [
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[tissue_seg_fsl_fast,
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tissue_seg_ants_prior]
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tissue_seg_ants_prior,
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tissue_seg_freesurfer]
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]
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if 'T1_Template' in cfg.segmentation['tissue_segmentation'][
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'Template_Based']['template_for_segmentation']:

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