Add surface analysis and post-proc as default to ABCD-options preconfig

Author: sgiavasis

CPAC/resources/configs/pipeline_config_abcd-options.yml

@@ -53,6 +53,20 @@ pipeline_setup:
     #   'Number of Participants to Run Simultaneously' is as much RAM you can safely allocate.
     maximum_memory_per_participant: 10.0
 
+surface_analysis:
+
+  # Will run Freesurfer for surface-based analysis. Will output traditional Freesurfer derivatives.
+  # If you wish to employ Freesurfer outputs for brain masking or tissue segmentation in the voxel-based pipeline,
+  # select those 'Freesurfer-' labeled options further below in anatomical_preproc.
+  freesurfer: 
+
+    run: On
+
+  # Run ABCD-HCP post FreeSurfer and fMRISurface pipeline
+  post_freesurfer: 
+
+    run: On
+
 anatomical_preproc: 
 
   # Non-local means filtering via ANTs DenoiseImage