⬇️ Revert FreeSurfer

Author: shnizzedy

.github/Dockerfiles/base-standard.Dockerfile

@@ -14,7 +14,7 @@
 
 # You should have received a copy of the GNU Lesser General Public
 # License along with C-PAC. If not, see <https://www.gnu.org/licenses/>.
-FROM ghcr.io/fcp-indi/c-pac/freesurfer:7.3.2-Python3.10-bionic as FreeSurfer
+FROM ghcr.io/fcp-indi/c-pac/freesurfer:6.0.0-min.neurodocker-bionic as FreeSurfer
 
 FROM ghcr.io/fcp-indi/c-pac/stage-base:lite-v1.8.6.dev
 LABEL org.opencontainers.image.description "NOT INTENDED FOR USE OTHER THAN AS A STAGE IMAGE IN A MULTI-STAGE BUILD \
@@ -23,17 +23,17 @@ LABEL org.opencontainers.image.source https://github.com/FCP-INDI/C-PAC
 USER root
 
 # Installing FreeSurfer
-ENV FREESURFER_HOME="/opt/freesurfer" \
-    PATH="/opt/freesurfer/bin:$PATH" \
+ENV FREESURFER_HOME="/usr/lib/freesurfer" \
     NO_FSFAST=1
-ENV PERL5LIB="$FREESURFER_HOME/mni/share/perl5" \
+ENV PATH="$FREESURFER_HOME/bin:$PATH" \
+    PERL5LIB="$FREESURFER_HOME/mni/share/perl5" \
     FSFAST_HOME="$FREESURFER_HOME/fsfast" \
     SUBJECTS_DIR="$FREESURFER_HOME/subjects" \
     MNI_DIR="$FREESURFER_HOME/mni"
 ENV MINC_BIN_DIR="$MNI_DIR/bin" \
     MINC_LIB_DIR="$MNI_DIR/lib" \
     PATH="$PATH:$MINC_BIN_DIR"
-COPY --from=FreeSurfer /opt/freesurfer/ /opt/freesurfer/
+COPY --from=FreeSurfer /usr/lib/freesurfer/ /usr/lib/freesurfer/
 COPY dev/docker_data/license.txt $FREESURFER_HOME/license.txt
 
 # link libraries & clean up