📝 Update the Group Template Options (#292)

Author: shnizzedy

bin/build

@@ -5,6 +5,7 @@ CPAC_DIRECTORY=$(python -c "import os, CPAC; print(os.path.abspath(os.path.dirna
 ln ${CPAC_DIRECTORY}/resources/configs/1.7-1.8-nesting-mappings.yml docs/_sources/references/1.7-1.8-nesting-mappings.yml || true
 ln ${CPAC_DIRECTORY}/resources/configs/1.7-1.8-deprecations.yml docs/_sources/references/1.7-1.8-deprecations.yml || true
 ln ${CPAC_DIRECTORY}/resources/configs/pipeline_config_default.yml docs/_sources/references/default_pipeline.yml || true
+ln ${CPAC_DIRECTORY}/resources/configs/group_config_template.yml docs/_sources/references/group_config_template.yml || true
 
 # build docs
-sphinx-build -b html docs/_sources docs/$1
+sphinx-build -b html docs/_sources docs/$1

docs/_sources/user/group_mdmr.rst

@@ -38,15 +38,10 @@ Configuration Using a YAML File
 """"""""""""""""""""""""""""""""
 To configure CWAS options within a YAML file, add the following lines to your file (with appropriate substitutions for paths):
 
-.. code-block:: yaml
-
-    runCWAS = [0]
-    cwas_roi_file = '/path/to/cwas_mask_file'
-    cwas_regressor_file = '/path/to/cwas_regressor_file'
-    cwas_regressor_participant_column = 'ID
-    cwas_regressor_columns = ['FIQ', 'VIQ', 'PIQ']
-    cwas_permutations = 500
-    cwas_parallel_nodes = 3
+.. literalinclude:: /references/group_config_template.yml
+   :language: YAML
+   :start-at: # Multivariate Distance Matrix Regression (MDMR)
+   :end-before: # Inter-Subject Correlation (ISC) & Inter-Subject Functional Correlation (ISFC)
 
 References
 ^^^^^^^^^^