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Copy file name to clipboardExpand all lines: docs/user/_sources/tse.txt
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@@ -57,21 +57,6 @@ Voxel Timeseries Extraction will export the individual timeseries of all voxels
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#. **Output Options - [CSV, NUMPY]:** Choose to save outputs as a csv file or Numpy array. Outputs are saved as a text file and 1D file by default.
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Vertex Timeseries Extraction
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============================
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Voxel Timeseries Extraction uses FreeSurfer to generate a 2-dimensional model of the cortical surface. Activation data is transformed and registered to points (vertices) on the surface model, each with its own activation timeseries. These timeseries can then be extracted. **Note: Vertex Timeseries Extraction is currently not fully implemented in C-PAC. This section documents the current state of the graphical user interface for reference purposes only.**
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.. figure:: /_images/tse_vertex.png
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#. **Run Surface Registration - [Off, On]:** Register timeseries data to a surface model built by FreeSurfer. Required to run vertex timeseries extraction. **Note: CPAC currently doesn't fully support surface extraction.**
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#. **Recon Subject Directory - [path]:** The directory where FreeSurfer outputs surface data.
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#. **Run Vertices Timeseries - [Off, On]:** Extract timeseries data for surface vertices. **Note: CPAC currently doesn't fully support surface extraction.**
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#. **Vertices Timeseries Output Formats - [CSV, NUMPY]:** Choose to save outputs as a csv file or Numpy array.
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