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Scale flowcharts and make them clickable
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docs/_sources/developer/continuous_integration.rst

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<div class="flowchart-container"><object data="../_static/flowcharts/CI-flow.svg" type="image/svg+xml"></object></div>
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<a href="../_static/flowcharts/CI-flow.svg"><img src="../_static/flowcharts/CI-flow.svg" /></a>

docs/_sources/developer/logging.rst

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<div class="flowchart-container"><object data="../_static/flowcharts/getLogger.svg" type="image/svg+xml"></object></div>
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<a href="../_static/flowcharts/getLogger.svg"><img src="../_static/flowcharts/getLogger.svg" /></a>
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each have their own intended use cases.

docs/_sources/user/anat.rst

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Surface Analysis
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C-PAC uses `FSL/FAST <http://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FAST>`_ to automatically segment brain images into white matter, gray matter, and CSF. This is done using probability maps that contain information about the likelihood that a given voxel will be of a particular tissue type. Users specify a probability threshold such that voxels meeting a minimum probability of being a particular tissue will be classified as such. This results in masks containing voxels of only a single tissue type.
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docs/_sources/user/func.rst

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Initial Preprocessing
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^^^^^^^^^^^^^^^^^^^^^

docs/_sources/user/longitudinal.rst

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Background
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^^^^^^^^^^

docs/_sources/user/pipelines/configurable-settings.rst

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.. toctree::
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docs/_sources/user/pipelines/pipeline_config.rst

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Data Management and Environment Settings
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'''''''''''''''''''''''''''''''''''''''''

docs/_sources/user/preprocessing.rst

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The following index provides links to pages containing overviews and configuration instructions for the various pre-processing steps that C-PAC performs. For more information about how to set up a pipeline configuration, see the :doc:`pipeline configuration page </user/pipelines/pipeline_config>`.
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