Classification

Author: jpellman

docs/user/_sources/_static/outputs.csv

@@ -1,4 +1,4 @@
-alff_img
+Anatomical Preprocessing
 anatomical_brain
 anatomical_csf_mask
 anatomical_gm_mask
@@ -19,24 +19,19 @@ ants_symmetric_rigid_xfm
 apply_ants_warp_func_mni
 apply_ants_warpoutputspec.output_image
 apply_fsl_warpout_file
-bbregister_registration
-centrality_outputs
-centrality_outputs_smoothed
-centrality_outputs_smoothed_zstd
-centrality_outputs_zstd
+seg_mixeltype
+seg_partial_volume_files
+seg_partial_volume_map
+seg_probability_maps
+mni_normalized_anatomical
+mni_to_anatomical_linear_xfm
+mni_to_anatomical_nonlinear_xfm
+symmetric_mni_normalized_anatomical
+symmetric_mni_to_anatomical_linear_xfm
+symmetric_mni_to_anatomical_nonlinear_xfm
+
+Functional Preprocessing
 coordinate_transformation
-dr_tempreg_maps_files
-dr_tempreg_maps_files_to_standard_smooth
-dr_tempreg_maps_stack
-dr_tempreg_maps_stack_to_standard_smooth
-dr_tempreg_maps_zstat_files
-dr_tempreg_maps_zstat_files_to_standard_smooth
-dr_tempreg_maps_zstat_stack
-dr_tempreg_maps_zstat_stack_to_standard_smooth
-falff_img
-fisher_z_score_stdoutputspec.fisher_z_score_img
-frame_wise_displacement
-func_name
 functional_brain_mask
 functional_brain_mask_to_standard
 functional_freq_filtered
@@ -45,29 +40,91 @@ functional_mni
 functional_nuisance_residuals
 functional_preprocessed_mask
 functional_to_anat_linear_xfm
-itk_collected_warps_%s
-itk_func_anat_affine_%s
-left_hemisphere_surface
-max_displacement
+preprocessed
+raw_functional
 mean_functional
 mean_functional_in_anat
 mean_functional_in_mni
-#mni_normalized_anatomical
-mni_normalized_anatomical
-mni_to_anatomical_linear_xfm
-mni_to_anatomical_nonlinear_xfm
+selected_func_volume
+slice_time_corrected
+itk_collected_warps_%s
+itk_func_anat_affine_%s
+
+Nuisance Corrections
 motion_correct
 motion_correct_to_standard
+
+Temporal Filtering
+bandpassed_file
+
+Motion Correction
+frame_wise_displacement
+max_displacement
+power_params
 motion_params
 movement_parameters
-output_means.@%s_average%output_resource
-output_name
-output_smoothout_file
-outputspec.itk_transform
-outputspec.output_image
-outputspec.transformation_series
-power_params
-preprocessed
+scrubbed_preprocessed
+scrubbing_frames_excluded
+scrubbing_frames_included
+scrubbing_movement_parameters
+
+Time Series Extraction
+voxel_timeseries
+voxel_timeseries_for_SCA
+roi_timeseries
+roi_timeseries_for_SCA
+vertices_timeseries
+left_hemisphere_surface
+right_hemisphere_surface
+bbregister_registration
+
+Smoothing
+%s_smooth % output_name
+%s_to_standard_smooth %
+
+Seed-based Correlation Analysis (SCA) - Analyze the connectivity between brain regions.
+sca_roi_correlation_files
+sca_roi_correlation_stack
+sca_seed_correlation_files
+sca_tempreg_maps_files
+sca_tempreg_maps_files_smooth
+sca_tempreg_maps_stack
+sca_tempreg_maps_stack_smooth
+sca_tempreg_maps_zstat_files
+sca_tempreg_maps_zstat_files_smooth
+sca_tempreg_maps_zstat_stack
+sca_tempreg_maps_zstat_stack_smooth
+
+Dual Regression - Compare large-scale networks.
+spatial_map_timeseries
+dr_tempreg_maps_files
+dr_tempreg_maps_files_to_standard_smooth
+dr_tempreg_maps_stack
+dr_tempreg_maps_stack_to_standard_smooth
+dr_tempreg_maps_zstat_files
+dr_tempreg_maps_zstat_files_to_standard_smooth
+dr_tempreg_maps_zstat_stack
+dr_tempreg_maps_zstat_stack_to_standard_smooth
+
+Voxel-mirrored Homotopic Connectivity (VMHC) - Investigate connectivity between hemispheres.
+vmhc_fisher_zstd
+vmhc_fisher_zstd_zstat_map
+vmhc_raw_score
+
+Amplitude of Low Frequency Fluctuations (ALFF) and fractional ALFF (fALFF) - Measure the power of slow fluctuations in brain activity.
+alff_img
+falff_img
+
+Regional Homogeneity (ReHo) - Measure the similarity of activity patterns across neighboring voxels.
+raw_reho_map
+
+Network Centrality - Analyze the structure of functional networks.
+centrality_outputs
+centrality_outputs_smoothed
+centrality_outputs_smoothed_zstd
+centrality_outputs_zstd
+
+Quality Control
 qc___csf_gm_wm_a
 qc___csf_gm_wm_s
 qc___fd_plot
@@ -88,45 +145,11 @@ qc___snr_hist
 qc___snr_s
 qc___snr_val
 qc___%s_s%measure
-raw_functional
-raw_reho_map
-right_hemisphere_surface
-roi_timeseries
-roi_timeseries_for_SCA
-sca_roi_correlation_files
-sca_roi_correlation_stack
-sca_seed_correlation_files
-sca_tempreg_maps_files
-sca_tempreg_maps_files_smooth
-sca_tempreg_maps_stack
-sca_tempreg_maps_stack_smooth
-sca_tempreg_maps_zstat_files
-sca_tempreg_maps_zstat_files_smooth
-sca_tempreg_maps_zstat_stack
-sca_tempreg_maps_zstat_stack_smooth
-scrubbed_preprocessed
-scrubbing_frames_excluded
-scrubbing_frames_included
-scrubbing_movement_parameters
-seg_mixeltype
-seg_partial_volume_files
-seg_partial_volume_map
-seg_probability_maps
-selected_func_volume
-%s_fisher_zstd%output_resource
-slice_time_corrected
-spatial_map_timeseries
-%s_smooth%output_name
-%s_to_standard%output_name
-%s_to_standard_smooth%\
-symmetric_mni_normalized_anatomical
-symmetric_mni_to_anatomical_linear_xfm
-symmetric_mni_to_anatomical_nonlinear_xfm
-%s_zstd%output_resource
-vertices_timeseries
-vmhc_fisher_zstd
-vmhc_fisher_zstd_zstat_map
-vmhc_raw_score
-voxel_timeseries
-voxel_timeseries_for_SCA
-z_score_stdoutputspec.z_score_img
+
+Derivatives Settings:
+%s_fisher_zstd % output_resource
+%s_zstd % output_resource
+
+All outputs:
+output_means.@%s_average % output_resource
+%s_to_standard % output_name