Related problem
Not really a problem, but something that could be improved.
Currently we run exec::
directives in docstrings to generate workflow graphs for Nipype workflows. This works fine but displays a blank line of output.

Nipype has a Sphinx extension to build the graphs with less code in the docstrings and without the blank line of output displaying.
Proposed feature
Include 'nipype.sphinxext.plot_workflow'
in https://github.com/FCP-INDI/fcp-indi.github.com/blob/565c9e02850f09a57fb2971fa4ed365819657d32/docs/_sources/conf.py#L118-L128
Replace exec::
workflow directives in docstrings with pithier workflow::
directives.