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workflow.py
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import calendar
import datetime
from datetime import timedelta
from job import Job
from monitor import Monitor
from period import Period
from sensor import Sensor
from sensorpair import SensorPair
class Workflow:
def __init__(self, usecase, time_slot_days, config_dir=None, production_period=None):
"""
:type usecase: str
:type production_period: Period
"""
self.usecase = usecase
self.production_period = production_period
self.config_dir = config_dir
self.samples_per_time_slot = 50000
self.time_slot_days = time_slot_days
self.primary_sensors = set()
self.secondary_sensors = set()
self.usecase_config = None
self.input_dir = None
def get_usecase(self):
"""
:rtype : str
"""
return self.usecase
def set_usecase_config(self, usecase_config):
"""
:type usecase_config: str
"""
self.usecase_config = usecase_config
def _get_config_dir(self):
"""
:rtype : str
"""
return self.config_dir
def get_production_period(self):
"""
:rtype : Period
"""
return self.production_period
def get_samples_per_time_slot(self):
"""
:rtype : int
"""
return self.samples_per_time_slot
def set_samples_per_time_slot(self, samples_per_time_slot):
"""
:type samples_per_time_slot: int
"""
self.samples_per_time_slot = samples_per_time_slot
def set_input_dir(self, input_dir):
"""
:type input_dir: str
"""
self.input_dir = input_dir
def get_input_dir(self):
"""
:type : input directory for post-processing
:rtype : str
"""
return self.input_dir
def get_time_slot_days(self):
"""
:type : days per processing time slot
:rtype : int
"""
return self.time_slot_days
def add_primary_sensor(self, name, start_date, end_date, version=''):
"""
:type name: str
"""
period = Period(start_date, end_date)
for sensor in self._get_primary_sensors():
if sensor.get_name() == name and sensor.get_period().is_intersecting(period):
raise ValueError("Periods of sensor '" + name + "' must not intersect.")
if version == '':
self.primary_sensors.add(Sensor(name, period))
else:
self.primary_sensors.add(Sensor(name, period, version))
def _get_primary_sensors(self):
"""
:rtype : list
"""
return sorted(list(self.primary_sensors), reverse=True)
def add_secondary_sensor(self, name, start_date, end_date, version=''):
"""
:type name: str
:type start_date: str
:type end_date: str
:type version: str
"""
period = Period(start_date, end_date)
for sensor in self._get_secondary_sensors():
if sensor.get_name() == name and sensor.get_period().is_intersecting(period):
raise ValueError("Periods of sensor '" + name + "' must not intersect.")
if version == '':
self.secondary_sensors.add(Sensor(name, period))
else:
self.secondary_sensors.add(Sensor(name, period, version))
def _get_secondary_sensors(self):
"""
:rtype : list
"""
return sorted(list(self.secondary_sensors), reverse=True)
def _get_sensor_pairs(self):
"""
:rtype : list
"""
sensor_pairs = set()
primary_sensors = self._get_primary_sensors()
secondary_sensors = self._get_secondary_sensors()
if len(secondary_sensors) > 0:
for p in primary_sensors:
for s in secondary_sensors:
if p != s:
try:
sensor_pair = SensorPair(p, s, self.get_production_period())
sensor_pairs.add(sensor_pair)
except ValueError:
pass
else:
for p in primary_sensors:
try:
sensor_pair = SensorPair(p, p, self.get_production_period())
sensor_pairs.add(sensor_pair)
except ValueError:
pass
return sorted(list(sensor_pairs), reverse=True)
def _get_data_period(self):
"""
:rtype : Period
"""
start_date = datetime.date.max
end_date = datetime.date.min
for sensor_pair in self._get_sensor_pairs():
period = sensor_pair.get_period()
if period.get_start_date() < start_date:
start_date = period.get_start_date()
if period.get_end_date() > end_date:
end_date = period.get_end_date()
if start_date < end_date:
return Period(start_date, end_date)
else:
return None
def _get_effective_production_period(self):
"""
:rtype : Period
"""
data_period = self._get_data_period()
if data_period is None:
return None
production_period = self.get_production_period()
if production_period is None:
return data_period
else:
return production_period.get_intersection(data_period)
def _add_inp_preconditions(self, preconditions):
"""
:type preconditions: list
:rtype : list
"""
sensors = self._get_primary_sensors()
for sensor in sensors:
sensor_period = sensor.get_period()
date = sensor_period.get_start_date() - datetime.timedelta(days=1)
while date < sensor_period.get_end_date():
chunk = self._get_next_period(date)
if chunk is None:
break
start_string = self._get_year_day_of_year(chunk.get_start_date())
end_string = self._get_year_day_of_year(chunk.get_end_date())
sensor_name = sensor.get_name()
input_pre_condition = 'ingest-' + sensor_name + '-' + start_string + '-' + end_string
preconditions.append(input_pre_condition)
input_pre_condition = 'dummy_job-' + sensor_name + '-' + start_string + '-' + end_string
preconditions.append(input_pre_condition)
date = chunk.get_end_date()
return preconditions
def _add_post_processing_preconditions(self, preconditions):
"""
:type preconditions: list
:rtype : list
"""
production_period = self.get_production_period()
if production_period is None:
return preconditions
date = production_period.get_start_date()
while date < production_period.get_end_date():
chunk = self._get_next_period(date)
start_string = self._get_year_day_of_year(chunk.get_start_date())
end_string = self._get_year_day_of_year(chunk.get_end_date())
mmd_pre_condition = 'mmd-' + start_string + '-' + end_string
preconditions.append(mmd_pre_condition)
date = chunk.get_end_date()
return preconditions
def _get_monitor(self, hosts, calls, log_dir, simulation, synchronous=False):
"""
:type hosts: list
:type calls: list
:type log_dir: str
:type simulation: bool
:type synchronous: bool
:rtype : Monitor
"""
preconditions = list()
# @todo 1 tb/tb refactor this, it's only relevant for ingestion
self._add_inp_preconditions(preconditions)
self._add_post_processing_preconditions(preconditions)
# @todo 2 tb/tb do we need this 2016-03-29
# self._add_obs_preconditions(preconditions)
# self._add_smp_preconditions(preconditions)
return Monitor(preconditions, self.get_usecase(), hosts, calls, log_dir, simulation, synchronous)
def _next_year_start(self, date):
"""
:type date: datetime.date
:rtype : datetime.date
"""
return datetime.date(date.year + 1, 1, 1)
def _get_year_day_of_year(self, date):
"""
:type date: datetime.date
:rtype : str
"""
return str(date.year) + '-' + str(date.timetuple().tm_yday).zfill(3)
def _get_next_period(self, date):
"""
:param date: datetime.date
:return: Period
"""
start = date + timedelta(1)
end = date + timedelta(self.time_slot_days)
if end.year > start.year:
last_year = end.year - 1
last_day = calendar.monthrange(last_year, 12)[1]
end = datetime.date(last_year, 12, last_day)
elif end.month > start.month:
month_before = end.month - 1
last_day = calendar.monthrange(end.year, month_before)[1]
end = datetime.date(end.year, month_before, last_day)
if end < start:
return None
return Period(start, end)
def run_ingestion(self, hosts, num_parallel_tasks, simulation=False, logdir='trace'):
"""
:param hosts: list
:param num_parallel_tasks: int
:param simulation: bool
:param logdir: str
:return:
"""
monitor = self._get_monitor(hosts, [('ingest_start.sh', num_parallel_tasks)], logdir, simulation)
sensors = self._get_primary_sensors()
for sensor in sensors:
sensor_period = sensor.get_period()
date = sensor_period.get_start_date() - datetime.timedelta(days=1)
data_version = sensor.get_data_version()
while date < sensor_period.get_end_date():
chunk = self._get_next_period(date)
start_string = self._get_year_day_of_year(chunk.get_start_date())
end_string = self._get_year_day_of_year(chunk.get_end_date())
sensor_name = sensor.get_name()
job_name = 'ingest-' + sensor_name + '-' + start_string + '-' + end_string
post_condition = 'stored-' + sensor_name + '-' + start_string + '-' + end_string
job = Job(job_name, 'ingest_start.sh', [job_name], [post_condition],
[sensor_name, start_string, end_string, data_version, self._get_config_dir()])
monitor.execute(job)
date = chunk.get_end_date()
monitor.wait_for_completion()
def run_test_job(self, hosts, simulation=False, logdir='trace'):
"""
:param hosts: list
:param logdir: str
:param simulation: bool
:return:
"""
monitor = self._get_monitor(hosts, list(), logdir, simulation)
sensors = self._get_primary_sensors()
for sensor in sensors:
sensor_period = sensor.get_period()
date = sensor_period.get_start_date() - datetime.timedelta(days=1)
data_version = sensor.get_data_version()
while date < sensor_period.get_end_date():
chunk = self._get_next_period(date)
start_string = self._get_year_day_of_year(chunk.get_start_date())
end_string = self._get_year_day_of_year(chunk.get_end_date())
sensor_name = sensor.get_name()
job_name = 'dummy_job-' + sensor_name + '-' + start_string + '-' + end_string
post_condition = 'stored-' + sensor_name + '-' + start_string + '-' + end_string
job = Job(job_name, 'dummy_job_start.sh', [job_name], [post_condition],
[sensor_name, start_string, end_string, data_version, self._get_config_dir()])
monitor.execute(job)
date = chunk.get_end_date()
monitor.wait_for_completion()
def run_matchup(self, hosts, num_parallel_tasks, simulation=False, logdir='trace', synchronous=False):
"""
:param hosts: list
:param num_parallel_tasks: int
:param simulation: bool
:param logdir: str
:param synchronous: bool
:return:
"""
if synchronous:
runs_script = 'matchup_run.sh'
else:
runs_script = 'matchup_start.sh'
monitor = self._get_monitor(hosts, [(runs_script, num_parallel_tasks)], logdir, simulation, synchronous)
sensors = self._get_sensor_pairs()
for sensor_pair in sensors:
name = sensor_pair.get_name()
""":type : str"""
sensor_period = sensor_pair.get_period()
date = sensor_period.get_start_date() - datetime.timedelta(days=1)
while date < sensor_period.get_end_date():
chunk = self._get_next_period(date)
start_string = self._get_year_day_of_year(chunk.get_start_date())
end_string = self._get_year_day_of_year(chunk.get_end_date())
job_name = 'matchup-' + name + '-' + start_string + '-' + end_string + '-' + self.usecase_config
primary_name = sensor_pair.get_primary_name()
pre_condition = 'ingest-' + primary_name + '-' + start_string + '-' + end_string
post_condition = 'matchup-' + name + '-' + start_string + '-' + end_string + '-' + self.usecase_config
job = Job(job_name, runs_script, [pre_condition], [post_condition],
[start_string, end_string, self._get_config_dir(), self.usecase_config])
monitor.execute(job)
date = chunk.get_end_date()
monitor.wait_for_completion()
def run_post_processing(self, hosts, num_parallel_tasks, simulation=False, logdir='trace', synchronous=False):
"""
:param hosts: list
:param num_parallel_tasks: int
:param simulation: bool
:param logdir: str
:param synchronous: bool:
decides whether post_processing_run.sh (True) or post_processing_start.sh (False) is called.
:return:
"""
if synchronous:
runs_script = 'post_processing_run.sh'
else:
runs_script = 'post_processing_start.sh'
monitor = self._get_monitor(hosts, [(runs_script, num_parallel_tasks)], logdir, simulation, synchronous)
production_period = self.get_production_period()
date = production_period.get_start_date()
while date < production_period.get_end_date():
chunk = self._get_next_period(date)
start_string = self._get_year_day_of_year(chunk.get_start_date())
end_string = self._get_year_day_of_year(chunk.get_end_date())
job_name = 'post-processing-' + start_string + '-' + end_string + '-' + self.usecase_config
pre_condition = 'mmd-' + start_string + '-' + end_string
post_condition = 'post-processing-' + start_string + '-' + end_string + '-' + self.usecase_config
job = Job(job_name, runs_script, [pre_condition], [post_condition],
[self.input_dir, start_string, end_string, self.usecase_config, self._get_config_dir()])
monitor.execute(job)
date = chunk.get_end_date()
monitor.wait_for_completion()