Prepare Release v2.6.0

* Update push_master_to_gitlab.yml

* correct link to JuGit repository

* Use pathlib in example 8b instead of os

* path os

* ruff format

* remove deprecated methods

Removed:
* exploitOutput
* storage.intraSOCstart
* utils.checkParamInput
* utils.setFormattedTimeSeries
* utils.checkInvestmentPeriodsCommodityConversion
* utils.checkTimeUnit
* utils.equalStrings

* fixed warning in tests

* adjust ruff check in pipeline and readme (#508)

* fixed indexing

* ruff

* ruff 2.0

* updated to geopandas >= 1 (#524)

Co-authored-by: h.wenzel <you@example.com>

* Update macOS Version in CI Pipelines

* Update ci

* Test for new dependency ranges

* Update minimum dependency ranges

* Remove comma

* Remove xarray

* increment netcdf4 dependency

* Bug fix for binaryOperation2_ Constraint (#522)

* include bigM into binaryOperation2_ constraint

* ruff formatting

* Replace division by bigM with multiplication of binary variable with 1e-4 to ensure numeric feasibility for high bigMs

---------

Co-authored-by: Julian Belina <56728940+julian-belina@users.noreply.github.com>

* 499 docstring of balancelimit (#523)

* Improved documentation of balanceLimit

* ruff formatting

* Update docstring

---------

Co-authored-by: Jonas <jonasbecker0708@gmail.com>
Co-authored-by: Julian Belina <56728940+julian-belina@users.noreply.github.com>
Co-authored-by: j.behrens <j.behrens@fz-juelich.de>

* Add code badge

* fix read the docs build (#537)

* fix read the docs build

* ruff

* 95 clean up codebase (#553)

* started revision of TODOs in codebase. the checking and setting of locationalEligibility does not work at the moment - needs revision!

* closed further ToDos. 7 which are not totally clear are missing

* deleted outcommented unnecessary code

* further clean up

* revised none comparisons and type checks (replaced type== by isinstance)

---------

Co-authored-by: h.wenzel <you@example.com>

* Xarray517 (#542)

* two different operation types (total and annual) correctly implemented, tests remaining

* added operation_annual to each component class, tests run, issue should be solved

* all tests run through

* ruff check

* ruff check complete

* deleted comments in xarryIO

* removed the commented out codes

---------

Co-authored-by: Bernhard Wortmann <b.wortmann@fz-juelich.de>
Co-authored-by: p.dunkel <p.dunkel@fz-juelich.de>
Co-authored-by: Philipp Dunkel <89200680+phil-fzj@users.noreply.github.com>

* fixed wrong coordinates in xarray output of transmission components (#543)

* fixed wrong coordinates in xarray output of transmission components

* added a test that checks the dimension names of the xarray output and confirms that they are as expected & adapted output path handling for text_xarrayio

* changed dimension naming convention in xarray to make it more understandable: location, time (previously space, time) for all non-transmission components; locationIn, locationOut, time (previously space, space_2, time) for transmission components

---------

Co-authored-by: Philipp Dunkel <89200680+phil-fzj@users.noreply.github.com>
Co-authored-by: p.dunkel <p.dunkel@fz-juelich.de>

* 213 ramping (#511)

* Add inter-period ramping constraints to Conversion class and tests
* Ramping now works when using time series aggregation

---------

Co-authored-by: Nils Ludwig <n.ludwig@fz-juelich.de>
Co-authored-by: Bernhard Wortmann <b.wortmann@fz-juelich.de>
Co-authored-by: Julian Belina <56728940+julian-belina@users.noreply.github.com>
Co-authored-by: Philipp Dunkel <89200680+phil-fzj@users.noreply.github.com>
Co-authored-by: p.dunkel <p.dunkel@fz-juelich.de>

* 507 extend ruff coverage and create missing docstrings (#527)

* extended ruff coverage to all relevant files
* removed noqua statements where possible
* extended docstrings

---------

Co-authored-by: Jonas <jonasbecker0708@gmail.com>
Co-authored-by: Julian Belina <56728940+julian-belina@users.noreply.github.com>
Co-authored-by: Jonas-fzj <j.becker@fz-juelich.de>
Co-authored-by: Philipp Dunkel <89200680+phil-fzj@users.noreply.github.com>

* Simplify CI testing, test from single source of truth, implement renovate

* Update requirement file name

* Update python version extraction

* Try to make fewer skipped jobs

* Ignore some dependencies

* Update renovate

* Update geopandas version constraints and add package rules for dependency management

* add branch selection explicitly

* Update renovate configuration to widen range strategy and disable vulnerability alerts

* Update dependency matplotlib to <=3.10.8 (#573)

Co-authored-by: renovate[bot] <29139614+renovate[bot]@users.noreply.github.com>

* Update dependency pandas to v2.3.3 (#575)

* Update dependency pandas to v2.3.3

* Update pandas version constraint in requirements_dev.yml

---------

Co-authored-by: renovate[bot] <29139614+renovate[bot]@users.noreply.github.com>
Co-authored-by: JohannesBehrens <120372257+JohannesBehrens@users.noreply.github.com>

* Update dependency numpy to v2.4.2 (#574)

* Update dependency numpy to v2.4.2

* Update numpy version and fix documentation typo

---------

Co-authored-by: renovate[bot] <29139614+renovate[bot]@users.noreply.github.com>
Co-authored-by: JohannesBehrens <120372257+JohannesBehrens@users.noreply.github.com>

* Update dependency pyomo to v6.10.0

* Update dependency xarray to v2026 (#579)

* Update dependency xarray to v2026

* Fix xarray version and typos in pyproject.toml configuration

* Update xarray version constraints in requirements_dev.yml

---------

Co-authored-by: renovate[bot] <29139614+renovate[bot]@users.noreply.github.com>
Co-authored-by: JohannesBehrens <120372257+JohannesBehrens@users.noreply.github.com>

* Update dependency scikit-learn to v1.8.0

* Update dependency psutil to v7.2.2 (#576)

* Update dependency psutil to v7.2.2

* Update psutil version range in requirements_dev.yml

---------

Co-authored-by: renovate[bot] <29139614+renovate[bot]@users.noreply.github.com>
Co-authored-by: JohannesBehrens <120372257+JohannesBehrens@users.noreply.github.com>

* Update dependency netcdf4 to v1.7.4 (#580)

* Update dependency netcdf4 to v1.7.4

* Update netcdf4 version constraint in requirements_dev.yml

---------

Co-authored-by: renovate[bot] <29139614+renovate[bot]@users.noreply.github.com>
Co-authored-by: JohannesBehrens <120372257+JohannesBehrens@users.noreply.github.com>

* Update dependency rasterio to v1.5.0

* Update scikit-learn version in requirements_dev.yml

* Update pyomo version range in requirements_dev.yml

* Update rasterio version constraint in pyproject.toml

* Update rasterio version constraint in requirements_dev.yml

* Update dependency scipy to v1.17.1

* Update requirements_dev.yml

* Migrate config .github/renovate.json

* Update renovate.json to modify ignored dependencies

Removed several dependencies from the ignore list.

* Update regex match string in renovate.json for dependency versioning

* Update dependency pytest to <=8.4.2

* Update dependency pytest-xdist to <=3.8.0

* Update dependency ipykernel to v7

* Update dependency pytest to v9

* Add multiprocessing to all workflows

* Update dependency pytest-cov to v7

* Update dependency pwlf to v2.5.2

* Update dependency python to v3.14.3

* Update dependency python to v3.14.3

* Switch to uv in testing

* lower maximum python version due to tsam incompatability

* Bump version from 2.5.0 to 2.6.0

---------

Co-authored-by: JohannesBehrens <120372257+JohannesBehrens@users.noreply.github.com>
Co-authored-by: NilsLudwig <80832724+NilsLudwig@users.noreply.github.com>
Co-authored-by: jenszimmert <j.zimmert@fz-juelich.de>
Co-authored-by: Lana Söltzer <l.soeltzer@fz-juelich.de>
Co-authored-by: Philipp Dunkel <89200680+phil-fzj@users.noreply.github.com>
Co-authored-by: h.wenzel <you@example.com>
Co-authored-by: H-Wenzel <146360304+H-Wenzel@users.noreply.github.com>
Co-authored-by: Jonas-fzj <j.becker@fz-juelich.de>
Co-authored-by: Jonas <jonasbecker0708@gmail.com>
Co-authored-by: j.behrens <j.behrens@fz-juelich.de>
Co-authored-by: k-okosun <k.okosun@fz-juelich.de>
Co-authored-by: Bernhard Wortmann <b.wortmann@fz-juelich.de>
Co-authored-by: p.dunkel <p.dunkel@fz-juelich.de>
Co-authored-by: Nils Ludwig <n.ludwig@fz-juelich.de>
Co-authored-by: renovate[bot] <29139614+renovate[bot]@users.noreply.github.com>

Author: 14 people

.github/renovate.json

@@ -0,0 +1,54 @@
+{
+    "$schema": "https://docs.renovatebot.com/renovate-schema.json",
+    "extends": [
+        "config:recommended"
+    ],
+    "schedule": [
+        "after 10pm on tuesday",
+        "before 6am on wednesday"
+    ],
+    "rangeStrategy": "widen",
+    "vulnerabilityAlerts": {
+        "enabled": false
+    },
+    "osvVulnerabilityAlerts": false,
+    "enabledManagers": [
+        "pep621",
+        "custom.regex"
+    ],
+    "pep621": {
+        "managerFilePatterns": [
+            "/(^|/)pyproject\\.toml$/"
+        ]
+    },
+    "customManagers": [
+        {
+            "customType": "regex",
+            "managerFilePatterns": [
+                "/(^|/)requirements_dev\\.yml$/"
+            ],
+            "matchStrings": [
+                "- (?<depName>[a-zA-Z0-9_.-]+)[^\\n]*?(?<currentValue><=\\d[^\\n,]*)"
+            ],
+            "packageNameTemplate": "conda-forge/{{{depName}}}",
+            "datasourceTemplate": "conda",
+            "versioningTemplate": "pep440"
+        }
+    ],
+    "ignoreDeps": [
+        "sphinx",
+        "sphinx_rtd_theme",
+        "myst-parser",
+        "sphinx-rtd-theme",
+        "ruff",
+    ],
+    "packageRules": [
+        {
+            "matchManagers": [
+                "pep621",
+                "custom.regex"
+            ],
+            "groupName": "{{depName}}"
+        }
+    ]
+}

.github/workflows/push_master_to_gitlab.yml

@@ -25,5 +25,5 @@ jobs:
           git switch master
           echo "Checkout complete"
           echo start to push
-          git push --force https://push_to_jugit:${{ secrets.GITLAB_ACCESS_TOKEN }}@jugit.fz-juelich.de/iek-3/shared-code/shared-code/fine.git master
+          git push --force https://push_to_jugit:${{ secrets.GITLAB_ACCESS_TOKEN }}@jugit.fz-juelich.de/iek-3/shared-code/fine.git master
           echo push done

.github/workflows/test_code_formatting.yml

@@ -11,14 +11,12 @@ jobs:
   ruff:
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v6
       - uses: astral-sh/ruff-action@v3
         with:
           args: "--version"
           version: "0.13.1"
       - name: Check Linter
-        run: ruff check --output-format=github --config=pyproject.toml fine
-      # Needs to be activated to resolve issue https://github.com/FZJ-IEK3-VSA/FINE/issues/100
+        run: ruff check --output-format=github --config=pyproject.toml
       - name: Check Format
-
-        run: ruff format --diff --config pyproject.toml
+        run: ruff format --diff --config=pyproject.toml

.github/workflows/test_geopandas_versions.yml

@@ -0,0 +1,67 @@
+on:
+  workflow_dispatch:
+    inputs:
+      library:
+        description: "Dependency library name to test (e.g. numpy)"
+        required: true
+        type: string
+      min_version:
+        description: "Minimum (lower-bound) version to test (optional)"
+        required: false
+        type: string
+        default: ""
+      max_version:
+        description: "Maximum (upper-bound) version to test (optional)"
+        required: false
+        type: string
+        default: ""
+      runner_tag:
+        description: "Runner to execute the tests on (e.g. self-hosted, ubuntu-latest)"
+        required: true
+        type: string
+        default: "self-hosted"
+      ref:
+        description: "Branch to check out and use for workflows"
+        required: false
+        type: string
+        default: "develop"
+
+jobs:
+  # Resolve the line position of the library inside requirements_dev.yml so
+  # the test workflow knows which entry to override.
+  extract-position:
+    uses: FZJ-IEK3-VSA/.github/.github/workflows/_extract_env_versions.yml@main
+    with:
+      library_name: ${{ inputs.library }}
+      env_file: requirements_dev.yml
+
+  # Query conda-forge for all versions of the library within the given bounds
+  # and produce a matrix ready for _run_single_conda_forge_test.yml.
+  query-versions:
+    needs: extract-position
+    uses: FZJ-IEK3-VSA/.github/.github/workflows/_query_conda_forge_versions.yml@main
+    with:
+      package_name: ${{ inputs.library }}
+      min_version: ${{ inputs.min_version }}
+      max_version: ${{ inputs.max_version }}
+      dependency_position_env_file: ${{ needs.extract-position.outputs.dependency_position }}
+      requirements_file_name: requirements_dev.yml
+
+  TestManualVersions:
+    name: "Test ${{ matrix.library_name }} ${{ matrix.library_version }}"
+    needs: query-versions
+    if: needs.query-versions.outputs.matrix_json != '[]'
+    strategy:
+      fail-fast: false
+      matrix:
+        include: ${{ fromJSON(needs.query-versions.outputs.matrix_json) }}
+    uses: FZJ-IEK3-VSA/.github/.github/workflows/_run_single_conda_forge_test.yml@main
+    with:
+      runner_tag: ${{ inputs.runner_tag }}
+      requirements_file_name: ${{ matrix.requirements_file_name }}
+      ipynb_example_folder: "examples"
+      library_name: ${{ matrix.library_name }}
+      library_version: ${{ matrix.library_version }}
+      dependency_position_env_file: ${{ matrix.dependency_position_env_file }}
+      multiprocessing_pytest_string: "-n auto"
+      multiprocessing_example_string: "-n auto"