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lines changed Original file line number Diff line number Diff line change @@ -56,7 +56,7 @@ Example:
5656``` sh
5757# continue from previous shell
5858python fusion_run \
59- -inputs /path/to/seg_algo_1 .nii.gz,/path/to/seg_algo_2 .nii.gz,/path/to/seg_algo_3 .nii.gz \
59+ -inputs /path/to/seg_algo_0 .nii.gz,/path/to/seg_algo_1 .nii.gz,/path/to/seg_algo_2 .nii.gz \
6060-classes 0,1,2,4 \
6161-method STAPLE \
6262-output /path/to/seg_fusion.nii.gz
@@ -69,8 +69,8 @@ python fusion_run \
6969import SimpleITK as sitk
7070from LabelFusion.wrapper import fuse_images
7171
72- label_to_fuse_0 = ' /path/to/image_0 .nii.gz'
73- label_to_fuse_1 = ' /path/to/image_1 .nii.gz'
72+ label_to_fuse_0 = ' /path/to/seg_algo_0 .nii.gz'
73+ label_to_fuse_1 = ' /path/to/seg_algo_1 .nii.gz'
7474
7575images_to_fuse = []
7676images_to_fuse.append(sitk.ReadImage(label_to_fuse_0, sitk.sitkUInt8))
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