About data

[0x10C]

Hi There
Would you mind sharing how to get .pkl files and .npy files downloaded in data directory shell script?
Thanks a lot!

[emirceyani]

Hi, there are no .pkl and .npy files used for this repository.

You just need to run scripts for molecule tasks. For social networks, you need to support pytoch geometric.

Best

[0x10C]

Hi, there are no .pkl and .npy files used for this repository.

You just need to run scripts for molecule tasks. For social networks, you need to support pytoch geometric.

Best

Thanks for your reply, but i means that i got the files after run the shell script in data directory,but i dont konw how to get these files from raw datasets(eg SIDER dataset,i got some .pickle files and .npy files after run this, i looked up the reference of SIDER and got raw files,i tried to use networkx package to preprocess raw datasets ,but cannot get same result as i downloaded from running shell script.
So come here for help lol
thanks a lot

[emirceyani]

You can download molecule datasets from MoleculeNet and then apply the preprocessing from this paper. Use RDKit and networkx together. If you still need help, I may share it as a Github Gist for you or push the preprocessing notebooks.

[0x10C]

it would be helpful if you could share your preprocessing notebooks.
Thanks anyway

[noorikhalifa]

You can download molecule datasets from MoleculeNet and then apply the preprocessing from this paper. Use RDKit and networkx together. If you still need help, I may share it as a Github Gist for you or push the preprocessing notebooks.

It would be great if you could share the preprocessing notebooks, so it would be possible to run your models and test it with new molecules.

[2645227346]

Hi there，
I'm trying to runing the subgraph_level code. Due to permission issues ,I couldn't download the processed dataset by running the shell or download them using the URL. Would you please share the processed datasest like FB15k-237 ? It will help a lot for the following experiements.
Thanks you very much.