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New render with additional users
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‎README.md‎

Lines changed: 84 additions & 37 deletions
Original file line numberDiff line numberDiff line change
@@ -129,7 +129,7 @@ print(basic_rocrate)
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#> "@type": "Dataset",
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#> "name": "",
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#> "description": "",
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#> "datePublished": "2026-01-12",
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#> "datePublished": "2026-01-13",
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#> "license": {
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#> "@id": "http://spdx.org/licenses/CC-BY-4.0"
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#> },
@@ -164,8 +164,8 @@ print(basic_rocrate) # note that the output will be truncated
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#> "@id": "#dataset:67adf2d8e106aca9b11de773758bd241",
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#> "@type": "Dataset",
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#> "name": "CNSIM1",
167-
#> "dateCreated": "2026-01-12T06:29:57.431Z",
168-
#> "dateModified": "2026-01-12T06:29:58.577Z",
167+
#> "dateCreated": "2026-01-13T06:29:53.743Z",
168+
#> "dateModified": "2026-01-13T06:29:54.908Z",
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#> "path": "/datasource/CNSIM/table/CNSIM1"
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#> }
171171
#> ]
@@ -188,8 +188,8 @@ print(basic_rocrate) # note that the output will be truncated
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#> "@id": "#project:7ba189863f9f641196596cb28e04aa14",
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#> "@type": "Project",
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#> "name": "CNSIM",
191-
#> "dateCreated": "2026-01-12T06:29:56.147Z",
192-
#> "dateModified": "2026-01-12T06:30:00.883Z",
191+
#> "dateCreated": "2026-01-13T06:29:52.446Z",
192+
#> "dateModified": "2026-01-13T06:29:57.223Z",
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#> "hasPart": [
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#> {
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#> "@id": "#dataset:67adf2d8e106aca9b11de773758bd241"
@@ -452,7 +452,7 @@ basic_rocrate <- o |>
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logs_from = Sys.time() - 60, # capture the last minute
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logs_to = Sys.time())
454454
#> opening file input connection.
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#> Found 418 records... Imported 418 records. Simplifying...
455+
#> Found 49 records... Imported 49 records. Simplifying...
456456
#> closing file input connection.
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#> Warning: A `path` wasn't provided! The logs will be included in the RO-Crate
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#> object, under the `content` tag!
@@ -467,21 +467,21 @@ print(basic_rocrate) # note that the output will be truncated
467467
#> "description": "A resource represents some data or a computation unit. It is \n described by a URL and credentials. This package proposes a Resource model\n with \"resolver\" and \"client\" classes to facilitate the access and the usage of the \n resources."
468468
#> },
469469
#> {
470-
#> "@id": "2026-01-12-dslogs-dsuser.log",
470+
#> "@id": "2026-01-13-dslogs-dsuser.log",
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#> "@type": "File",
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#> "dateModified": "2026-01-12 16:05:24",
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#> "name": "2026-01-12-dslogs-dsuser.log",
474-
#> "description": "This file contains the raw logs for the user: `dsuser` , between: 2026-01-12 16:04:24 and 2026-01-12 16:05:24",
472+
#> "dateModified": "2026-01-13 10:03:57",
473+
#> "name": "2026-01-13-dslogs-dsuser.log",
474+
#> "description": "This file contains the raw logs for the user: `dsuser` , between: 2026-01-13 10:02:57 and 2026-01-13 10:03:57",
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#> "encodingFormat": "text/plain",
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#> "content": [
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#> ["[INFO][2026-01-12T16:05:21][OPEN] created a datashield session 711d6089-a3c0-487f-ba93-8efa38dd57d8", "[INFO][2026-01-12T16:05:21][ASSIGN] created symbol 'dsROCrate_test' from: 'dsROCrate_test <- opal[CNSIM.CNSIM1]'", "[INFO][2026-01-12T16:05:22][PARSE] parsed 'dsBase::lsDS(search.filter = NULL, 1L)'", "[INFO][2026-01-12T16:05:23][AGGREGATE] evaluated 'dsBase::lsDS(search.filter = NULL, 1L)'", "[INFO][2026-01-12T16:05:23][PARSE] parsed 'base::exists(\"dsROCrate_test\")'", "[INFO][2026-01-12T16:05:23][AGGREGATE] evaluated 'base::exists(\"dsROCrate_test\")'", "[INFO][2026-01-12T16:05:23][PARSE] parsed 'dsBase::classDS(\"dsROCrate_test\")'", "[INFO][2026-01-12T16:05:23][AGGREGATE] evaluated 'dsBase::classDS(\"dsROCrate_test\")'", "[INFO][2026-01-12T16:05:23][PARSE] parsed 'dsBase::isValidDS(dsROCrate_test)'", "[INFO][2026-01-12T16:05:23][AGGREGATE] evaluated 'dsBase::isValidDS(dsROCrate_test)'", "[INFO][2026-01-12T16:05:23][PARSE] parsed 'dsBase::dimDS(\"dsROCrate_test\")'", "[INFO][2026-01-12T16:05:23][AGGREGATE] evaluated 'dsBase::dimDS(\"dsROCrate_test\")'", "[INFO][2026-01-12T16:05:23][PARSE] parsed 'dsBase::colnamesDS(\"dsROCrate_test\")'", "[INFO][2026-01-12T16:05:23][AGGREGATE] evaluated 'dsBase::colnamesDS(\"dsROCrate_test\")'"]
477+
#> ["[INFO][2026-01-13T10:03:53][OPEN] created a datashield session 43a38dac-89a9-47ca-a57c-e7a669e014fe", "[INFO][2026-01-13T10:03:55][ASSIGN] created symbol 'dsROCrate_test' from: 'dsROCrate_test <- opal[CNSIM.CNSIM1]'", "[INFO][2026-01-13T10:03:55][PARSE] parsed 'dsBase::lsDS(search.filter = NULL, 1L)'", "[INFO][2026-01-13T10:03:56][AGGREGATE] evaluated 'dsBase::lsDS(search.filter = NULL, 1L)'", "[INFO][2026-01-13T10:03:56][PARSE] parsed 'base::exists(\"dsROCrate_test\")'", "[INFO][2026-01-13T10:03:56][AGGREGATE] evaluated 'base::exists(\"dsROCrate_test\")'", "[INFO][2026-01-13T10:03:56][PARSE] parsed 'dsBase::classDS(\"dsROCrate_test\")'", "[INFO][2026-01-13T10:03:56][AGGREGATE] evaluated 'dsBase::classDS(\"dsROCrate_test\")'", "[INFO][2026-01-13T10:03:56][PARSE] parsed 'dsBase::isValidDS(dsROCrate_test)'", "[INFO][2026-01-13T10:03:56][AGGREGATE] evaluated 'dsBase::isValidDS(dsROCrate_test)'", "[INFO][2026-01-13T10:03:56][PARSE] parsed 'dsBase::dimDS(\"dsROCrate_test\")'", "[INFO][2026-01-13T10:03:56][AGGREGATE] evaluated 'dsBase::dimDS(\"dsROCrate_test\")'", "[INFO][2026-01-13T10:03:56][PARSE] parsed 'dsBase::colnamesDS(\"dsROCrate_test\")'", "[INFO][2026-01-13T10:03:57][AGGREGATE] evaluated 'dsBase::colnamesDS(\"dsROCrate_test\")'"]
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#> ]
479479
#> },
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#> {
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#> "@id": "2026-01-12-dslogs-dsuser_mappings.csv",
481+
#> "@id": "2026-01-13-dslogs-dsuser_mappings.csv",
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#> "@type": "File",
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#> "dateModified": "2026-01-12 16:05:24",
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#> "name": "2026-01-12-dslogs-dsuser_mappings.csv",
483+
#> "dateModified": "2026-01-13 10:03:57",
484+
#> "name": "2026-01-13-dslogs-dsuser_mappings.csv",
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#> "description": "This file contains mappings and evaluated functions",
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#> "encodingFormat": "text/csv",
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#> "content": [
@@ -573,7 +573,7 @@ basic_rocrate <- basic_rocrate |>
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path_to_rocrate_bag <- basic_rocrate |>
574574
rocrateR::bag_rocrate(path = "./rocrates", overwrite = TRUE)
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#> RO-Crate successfully 'bagged'!
576-
#> For details, see: ./rocrates/rocrate-d2be223f15678b8f8a6f6ff06e3ed590.zip
576+
#> For details, see: ./rocrates/rocrate-ed4e631aea4cef802de309a64d28060f.zip
577577
```
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We can explore the contents with the following commands:
@@ -588,8 +588,8 @@ path_to_rocrate_bag |>
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#> ./rocrates/ROC/
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#> ├── bagit.txt
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#> ├── data
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#> │ ├── 2026-01-12-dslogs-dsuser.log
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#> │ ├── 2026-01-12-dslogs-dsuser_mappings.csv
591+
#> │ ├── 2026-01-13-dslogs-dsuser.log
592+
#> │ ├── 2026-01-13-dslogs-dsuser_mappings.csv
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#> │ └── ro-crate-metadata.json
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#> ├── manifest-sha512.txt
595595
#> └── tagmanifest-sha512.txt
@@ -636,7 +636,7 @@ print(safe_people_crate_v1)
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#> "@type": "Dataset",
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#> "name": "",
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#> "description": "",
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#> "datePublished": "2026-01-12",
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#> "datePublished": "2026-01-13",
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#> "license": {
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#> "@id": "http://spdx.org/licenses/CC-BY-4.0"
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#> },
@@ -653,32 +653,32 @@ print(safe_people_crate_v1)
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#> "@id": "#dataset:67adf2d8e106aca9b11de773758bd241",
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#> "@type": "Dataset",
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#> "name": "CNSIM1",
656-
#> "dateCreated": "2026-01-12T06:29:57.431Z",
657-
#> "dateModified": "2026-01-12T06:29:58.577Z",
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#> "dateCreated": "2026-01-13T06:29:53.743Z",
657+
#> "dateModified": "2026-01-13T06:29:54.908Z",
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#> "path": "/datasource/CNSIM/table/CNSIM1"
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#> },
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#> {
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#> "@id": "#dataset:ffb1b1adcafc024743be1b0c252787c9",
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#> "@type": "Dataset",
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#> "name": "CNSIM2",
664-
#> "dateCreated": "2026-01-12T06:29:58.589Z",
665-
#> "dateModified": "2026-01-12T06:29:59.703Z",
664+
#> "dateCreated": "2026-01-13T06:29:54.912Z",
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#> "dateModified": "2026-01-13T06:29:56.062Z",
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#> "path": "/datasource/CNSIM/table/CNSIM2"
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#> },
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#> {
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#> "@id": "#dataset:cc3061aef69ce457358815fb9d8c6492",
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#> "@type": "Dataset",
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#> "name": "CNSIM3",
672-
#> "dateCreated": "2026-01-12T06:29:59.713Z",
673-
#> "dateModified": "2026-01-12T06:30:00.883Z",
672+
#> "dateCreated": "2026-01-13T06:29:56.065Z",
673+
#> "dateModified": "2026-01-13T06:29:57.223Z",
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#> "path": "/datasource/CNSIM/table/CNSIM3"
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#> },
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#> {
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#> "@id": "#project:7ba189863f9f641196596cb28e04aa14",
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#> "@type": "Project",
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#> "name": "CNSIM",
680-
#> "dateCreated": "2026-01-12T06:29:56.147Z",
681-
#> "dateModified": "2026-01-12T06:30:00.883Z",
680+
#> "dateCreated": "2026-01-13T06:29:52.446Z",
681+
#> "dateModified": "2026-01-13T06:29:57.223Z",
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#> "hasPart": [
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#> {
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#> "@id": "#dataset:67adf2d8e106aca9b11de773758bd241"
@@ -965,7 +965,7 @@ print(safe_project_crate_v1)
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#> "@type": "Dataset",
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#> "name": "",
967967
#> "description": "",
968-
#> "datePublished": "2026-01-12",
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#> "datePublished": "2026-01-13",
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#> "license": {
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#> "@id": "http://spdx.org/licenses/CC-BY-4.0"
971971
#> },
@@ -982,32 +982,32 @@ print(safe_project_crate_v1)
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#> "@id": "#dataset:67adf2d8e106aca9b11de773758bd241",
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#> "@type": "Dataset",
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#> "name": "CNSIM1",
985-
#> "dateCreated": "2026-01-12T06:29:57.431Z",
986-
#> "dateModified": "2026-01-12T06:29:58.577Z",
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#> "dateCreated": "2026-01-13T06:29:53.743Z",
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#> "dateModified": "2026-01-13T06:29:54.908Z",
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#> "path": "/datasource/CNSIM/table/CNSIM1"
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#> },
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#> {
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#> "@id": "#dataset:ffb1b1adcafc024743be1b0c252787c9",
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#> "@type": "Dataset",
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#> "name": "CNSIM2",
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#> "dateCreated": "2026-01-12T06:29:58.589Z",
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#> "dateModified": "2026-01-12T06:29:59.703Z",
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#> "dateCreated": "2026-01-13T06:29:54.912Z",
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#> "dateModified": "2026-01-13T06:29:56.062Z",
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#> "path": "/datasource/CNSIM/table/CNSIM2"
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#> },
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#> {
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#> "@id": "#dataset:cc3061aef69ce457358815fb9d8c6492",
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#> "@type": "Dataset",
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#> "name": "CNSIM3",
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#> "dateCreated": "2026-01-12T06:29:59.713Z",
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#> "dateModified": "2026-01-12T06:30:00.883Z",
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#> "dateCreated": "2026-01-13T06:29:56.065Z",
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#> "dateModified": "2026-01-13T06:29:57.223Z",
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#> "path": "/datasource/CNSIM/table/CNSIM3"
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#> },
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#> {
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#> "@id": "#project:7ba189863f9f641196596cb28e04aa14",
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#> "@type": "Project",
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#> "name": "CNSIM",
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#> "dateCreated": "2026-01-12T06:29:56.147Z",
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#> "dateModified": "2026-01-12T06:30:00.883Z",
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#> "dateCreated": "2026-01-13T06:29:52.446Z",
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#> "dateModified": "2026-01-13T06:29:57.223Z",
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#> "hasPart": [
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#> {
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#> "@id": "#dataset:67adf2d8e106aca9b11de773758bd241"
@@ -1026,6 +1026,16 @@ print(safe_project_crate_v1)
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#> "name": "dsuser"
10271027
#> },
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#> {
1029+
#> "@id": "#person:a3cd7ce7818436c83b1eadaa5ba47411",
1030+
#> "@type": "Person",
1031+
#> "name": "dsuser2"
1032+
#> },
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#> {
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#> "@id": "#person:5657241505661473308ae9aa9a378293",
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#> "@type": "Person",
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#> "name": "dsuser3"
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#> },
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#> {
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#> "@id": "#perm:9bf7f75b6c5b07d02830b95652cd39a0-dict-summary-read",
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#> "@type": "ReadAction",
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#> "agent": {
@@ -1050,6 +1060,30 @@ print(safe_project_crate_v1)
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#> "description": "User may view table dictionary and summary statistics only; access to individual values is restricted."
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#> },
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#> {
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#> "@id": "#perm:802d140a064e6ebf3a784f759af1b640-write-dict",
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#> "@type": "WriteAction",
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#> "agent": {
1066+
#> "@id": "#person:a3cd7ce7818436c83b1eadaa5ba47411"
1067+
#> },
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#> "object": {
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#> "@id": "#dataset:ffb1b1adcafc024743be1b0c252787c9"
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#> },
1071+
#> "actionStatus": "PotentialActionStatus",
1072+
#> "description": "User may edit the table dictionary but cannot view individual values."
1073+
#> },
1074+
#> {
1075+
#> "@id": "#perm:802d140a064e6ebf3a784f759af1b640-summary-read",
1076+
#> "@type": "ReadAction",
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#> "agent": {
1078+
#> "@id": "#person:a3cd7ce7818436c83b1eadaa5ba47411"
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#> },
1080+
#> "object": {
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#> "@id": "#dataset:ffb1b1adcafc024743be1b0c252787c9"
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#> },
1083+
#> "actionStatus": "PotentialActionStatus",
1084+
#> "description": "User may view summary statistics only; access to individual values is restricted."
1085+
#> },
1086+
#> {
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#> "@id": "#perm:63b8097908f682bff1760e48d28c5855-dict-summary-read",
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#> "@type": "ReadAction",
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#> "agent": {
@@ -1062,6 +1096,18 @@ print(safe_project_crate_v1)
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#> "description": "User may view table dictionary and summary statistics only; access to individual values is restricted."
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#> },
10641098
#> {
1099+
#> "@id": "#perm:04c3f293c7a360fe0a1b7c29c8363540-read-all",
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#> "@type": "ReadAction",
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#> "agent": {
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#> "@id": "#person:5657241505661473308ae9aa9a378293"
1103+
#> },
1104+
#> "object": {
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#> "@id": "#dataset:cc3061aef69ce457358815fb9d8c6492"
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#> },
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#> "actionStatus": "PotentialActionStatus",
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#> "description": "User may view table dictionary and all individual values."
1109+
#> },
1110+
#> {
10651111
#> "@id": "_:localid:datashield.privacyLevel:5",
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#> "@type": "PropertyValue",
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#> "name": "datashield.privacyLevel",
@@ -1164,9 +1210,8 @@ safe_project_crate_v1_rmd <- tempfile(fileext = ".Rmd") # temporary file
11641210

11651211
safe_project_crate_contents <- safe_project_crate_v1 |>
11661212
dsROCrate::rocrate_report(filepath = safe_project_crate_v1_rmd, render = FALSE)
1167-
#> 1 'Author' entity was found!
1213+
#> 3 'Author' entities were found!
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#> 3 'Dataset' entities were found!
1169-
#> Warning: No entities were found with @type = 'WriteAction'!
11701215
#> Warning: No entities were found with @type = 'ControlAction'!
11711216
#> 1 'Project' entity was found!
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#> 14 'PropertyValue' OR 'SoftwareApplication' entities were found!
@@ -1188,7 +1233,9 @@ safe_project_crate_contents$overview_data |>
11881233
|:-------------|:----------|:------------|:-------------|
11891234
| CNSIM | CNSIM1 | dsuser | read |
11901235
| | CNSIM2 | dsuser | read |
1236+
| | | dsuser2 | read, write |
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| | CNSIM3 | dsuser | read |
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| | | dsuser3 | read |
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**Render and display report (HTML)**
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‎inst/images/README-safe_project_crate_audit_v1-1.png‎

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