Moving seabed_tools to main FAModel folder (and deleting submodule)

- The remaining functions in seabed_tools are either 1) used as helper functions to scripts like project.py to process different things, or 2) the main getDepthFromBathymetry functions
- Did not want to merge the functions into geography.py because that would create a project.py import dependence on the geography module
- So, we left those functions there and moved seabed_tools to the same directory as geography and helpers.py
- - At some point, the getDepthFromBathymetry functions can merge into something like helpers.py (like MoorPy), but going to leave it as import sbt for now
- Also, turbine.py uses the getInterpNum function, independent of anything seabed related, so that can likely eventually be a general helpers function
- Note: geography functions still also have a dependence on sbt.getDepthFromBathymetry
- processBoundary has a dependence on geography functions, but it doesn't need to

- Updated all the other import dependencies elsewhere

Author: shousner

famodel/design/layout_helpers.py

@@ -9,7 +9,7 @@
 
 
 from famodel.mooring.mooring import Mooring
-from famodel.seabed.seabed_tools import getDepthFromBathymetry
+from famodel.seabed_tools import getDepthFromBathymetry
 from famodel.project import Project
 from famodel.design.fadsolvers import dsolve2
 

famodel/geography.py

@@ -12,19 +12,16 @@
 import geopandas as gpd
 from shapely.geometry import Point, Polygon, LineString
 
-
-
-
-import famodel.seabed.seabed_tools as sbt
-
-
-
+import famodel.seabed_tools as sbt
 
 from pyproj import CRS
 from pyproj.aoi import AreaOfInterest
 from pyproj.database import query_utm_crs_info
 
 
+# =============================================================================
+# COORDINATE REFERENCE SYSTEMS & TRANSFORMATIONS
+# =============================================================================
 
 def getLatLongCRS(epsg_code=4326):
     '''Returns a coordinate reference system (CRS) object from the pyproj package of a 'wordly' CRS with units of latitude and longitude
@@ -250,8 +247,9 @@ def convertMeters2LatLong(xs, ys, centroid, latlong_crs, target_crs, mesh=False)
 
     return longs, lats
 
-
-
+# =============================================================================
+# BATHYMETRY & GEOSPATIAL DATA PROCESSING
+# =============================================================================
 
 def getMapBathymetry(gebcofilename):
 
@@ -417,8 +415,9 @@ def getLeaseAndBathymetryInfo(lease_name, bathymetry_file, bath_ncols=100, bath_
 
 
 
-
-
+# =============================================================================
+# FILE I/O & DATA FORMAT CONVERSION
+# =============================================================================
 
 def processGeotiff(filename, lat, lon, outfilename="processGeotiff.txt", **kwargs):
     '''Process a geotiff file containing bathymetry (or other info)
@@ -504,9 +503,6 @@ def processGeotiff(filename, lat, lon, outfilename="processGeotiff.txt", **kwarg
 
 
 
-
-
-
 def getSoilType(x, y, centroid, latlong_crs, custom_crs, soil_file):
     """Function to return the name of the soil below a specific x/y coordinate by creating shapely polygons based on the shapefile data.
     It loops through all polygons in the shapefile and if the x/y position is contained in that polygon, it returns the soil of that polygon."""

famodel/project.py

@@ -17,7 +17,7 @@
     pass
 
 #from shapely.geometry import Point, Polygon, LineString
-from famodel.seabed import seabed_tools as sbt
+import famodel.seabed_tools as sbt
 from famodel.mooring.mooring import Mooring
 from famodel.platform.platform import Platform
 from famodel.anchors.anchor import Anchor