Move files to directory structure, remove copilot explaination from docs

Author: RyanDavies19

famodel/installation/01_unload4installation.py

@@ -33,7 +33,7 @@
 conceptName = "3_ILIA_al[cr]_grd"
 
 # FILE LOCATIONS
-filePath = os.path.dirname(os.path.abspath(__file__))
+filePath = os.path.join(os.path.dirname(os.path.abspath(__file__)), "input_files")
 inputFile = os.path.join(filePath, category, f"{conceptName}.yaml")
 
 # Load the design

famodel/installation/02_load4installation.py

@@ -30,7 +30,7 @@
 conceptName = "3_ILIA_al[cr]_grd"
 
 # FILE LOCATIONS
-filePath     = os.path.dirname(os.path.abspath(__file__))
+filePath = os.path.join(os.path.dirname(os.path.abspath(__file__)), "input_files")
 inputFile    = os.path.join(filePath, category, f"proj_{conceptName}.yaml")
 mtricFile    = os.path.join(filePath, category, f"{conceptName}_mtr.xlsx")
 windFile     = os.path.join(filePath, "sites/wind_data/humboldt_rose_1.csv")

famodel/installation/03_step1_materialItems.py

@@ -89,7 +89,7 @@ def create_mtrlPkg(moor):
 
 # FILE LOCATIONS
 filePath     = os.path.dirname(os.path.abspath(__file__))
-inputFile    = os.path.join(filePath, category, f"proj_{conceptName}.yaml")
+inputFile    = os.path.join(filePath, "input_files", category, f"proj_{conceptName}.yaml")
 
 # Load project
 proj = Project(file=inputFile)
@@ -99,6 +99,6 @@ def create_mtrlPkg(moor):
 for moor in proj.mooringList.values():
     mtrlPkgs.append(create_mtrlPkg(moor))
 
-output = os.path.join(filePath, "mtrlPkgs.pkl") # TODO: make intermediate files saved to a separate folder
+output = os.path.join(filePath, "temp_files", "mtrlPkgs.pkl") # TODO: make intermediate files saved to a separate folder
 with open(output, 'wb') as f:
     pickle.dump(mtrlPkgs, f)

famodel/installation/04_step2_actionItems.py

@@ -27,12 +27,12 @@
 
 # FILE LOCATIONS
 filePath     = os.path.dirname(os.path.abspath(__file__))
-itemFile     = os.path.join(filePath, "mtrlPkgs.pkl")
+itemFile     = os.path.join(filePath, "temp_files", "mtrlPkgs.pkl")
 
 with open(itemFile, 'rb') as f:
     pkgs = pickle.load(f)
 
-vesselFile   = os.path.join(filePath, "vesselDesc.yaml")
+vesselFile   = os.path.join(filePath, "input_files/agent_yamls", "vesselDesc.yaml")
 vesselNames = ['AHTS']
 
 with open(vesselFile) as file: