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<title>Florida SEACAR GitHub Index</title>
<div class="chunk" id="navbar"><div class="rcode"><!--html_preserve--><link href="https://cdn.jsdelivr.net/npm/bootstrap@5.3.7/dist/css/bootstrap.min.css" rel="stylesheet" integrity="sha384-LN+7fdVzj6u52u30Kp6M/trliBMCMKTyK833zpbD+pXdCLuTusPj697FH4R/5mcr" crossorigin="anonymous">
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<a class="dropdown-item" href="https://floridaseacar.github.io/SEACAR_Trend_Analyses/MA%20Report%20Generation/">Managed Area Reports</a>
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<a class="dropdown-item" href="https://floridaseacar.github.io/SEACAR_Trend_Analyses/WQ_Cont_Discrete/">Water Quality Reports</a>
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<a class="dropdown-item" href="https://floridaseacar.github.io/SEACAR_Trend_Analyses/Coastal_Wetlands/output/CoastalWetlands_SpeciesRichness_Report.html", target="_blank">
Coastal Wetlands Species Richness
</a>
</li>
<li>
<a class="dropdown-item" href="https://floridaseacar.github.io/SEACAR_Trend_Analyses/Coral/output/PercentCover/Coral_PercentCover_Report.html", target="_blank">
Coral Percent Cover
</a>
</li>
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<a class="dropdown-item" href="https://floridaseacar.github.io/SEACAR_Trend_Analyses/Coral/output/SpeciesRichness/Coral_SpeciesRichness_Report.html", target="_blank">
Coral Species Richness
</a>
</li>
<li>
<a class="dropdown-item" href="https://floridaseacar.github.io/SEACAR_Trend_Analyses/Nekton/output/Nekton_SpeciesRichness_Report.html", target="_blank">
Nekton Species Richness
</a>
</li>
<li>
<a class="dropdown-item" href="https://floridaseacar.github.io/SEACAR_Trend_Analyses/Oyster/output/Oyster_AllParameters_Report.html", target="_blank">
Oyster (All parameters)
</a>
</li>
<li>
<a class="dropdown-item" href="https://floridaseacar.github.io/SEACAR_Trend_Analyses/SAV/output/SAV_Report.html", target="_blank">
Submerged Aquatic Vegetation
</a>
</li>
<li>
<a class="dropdown-item" href="https://floridaseacar.github.io/SEACAR_Trend_Analyses/SAV_WC_Analysis/DRAFT_SAV_WC_Report.pdf", target="_blank">
Submerged Aquatic Vegetation - Water Column Analysis
</a>
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<a class="dropdown-item" href="https://floridaapdata.shinyapps.io/continuous_wq/", target="_blank">Continuous WQ Dashboard</a>
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<li>
<a class="dropdown-item" href="https://floridaapdata.shinyapps.io/MonitoringPlanningTools/", target="_blank">Monitoring Planning Tools - Oyster Sample Size and Site Selection Tool</a>
</li>
</ul>
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<a class="nav-link dropdown-toggle" data-bs-toggle="dropdown" href="#" role="button" aria-expanded="false">SEACAR Trend Analyses</a>
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<li><a class="dropdown-item" href="https://github.com/FloridaSEACAR/SEACAR_Trend_Analyses/tree/main/Nekton" target="_blank">Nekton</a></li>
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<li><a class="dropdown-item" href="https://github.com/FloridaSEACAR/SEACAR_Trend_Analyses/tree/main/SAV_WC_Analysis" target="_blank">
Submerged Aquatic Vegetation - Water Column Analysis</a></li>
<li><a class="dropdown-item" href="https://github.com/FloridaSEACAR/SEACAR_Trend_Analyses/tree/main/WQ_Cont_Discrete" target="_blank">
Water Quality (Discrete and Continuous)</a></li>
</ul>
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<a class="navbar-brand" href="https://github.com/FloridaSEACAR", target="_blank">
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<div class="container-fluid">
<p style = "margin-top:20px;">Welcome to the Florida SEACAR GitHub index! Click on the thumbnails below or browse the menu above to get started.</p>
<div class="row" style="display:flex; justify-content:center; align-items:flex-start;">
<h2>Dashboards</h2>
<div class="col-md-4" style = "text-align:center;">
<h5>SEACAR Habitat Dashboard</h5>
<a href = "https://floridaapdata.shinyapps.io/SEACAR_Dashboard/" target="_blank">
<img src = "images/thumbnails/habitat_dash.png" height = 150px width = 375px style = "border-radius:15px; border: 1px solid black;">
</a>
</div>
<div class="col-md-4" style = "text-align:center;">
<h5>Continuous Water Quality Dashboard</h5>
<a href = "https://floridaapdata.shinyapps.io/continuous_wq/" target="_blank">
<img src = "images/thumbnails/wq_dash.png" height = 150px width = 375px style = "border-radius:15px; border: 1px solid black;">
</a>
</div>
<div class="col-md-4" style = "text-align:center;"></div>
</div>
<div class="row" style="display:flex; align-items:center;">
<h2>Monitoring Planning Tools</h2>
<div class="col-md-4" style = "text-align:center;">
<h5>Oyster Sample Size and Site Selection Tool</h5>
<a href = "https://floridaapdata.shinyapps.io/MonitoringPlanningTools/" target="_blank">
<img src = "images/thumbnails/oyster_dash.png" height = 150px width = 375px style = "border-radius:15px; border: 1px solid black;">
</a>
</div>
</div>
<div class="row" style="display:flex; justify-content:center; align-items:flex-start;">
<h2>Reports</h2>
<div class="col-md-4" style = "text-align:center;">
<h5>Managed Area</h5>
<a href = "https://floridaseacar.github.io/SEACAR_Trend_Analyses/MA%20Report%20Generation/">
<img src = "images/thumbnails/ma_reports.png" height = 150px width = 375px style = "border-radius:15px; border: 1px solid black;">
</a>
</div>
<div class="col-md-4" style = "text-align:center;">
<h5>Water Quality</h5>
<a href = "https://floridaseacar.github.io/SEACAR_Trend_Analyses/WQ_Cont_Discrete/">
<img src = "images/thumbnails/wq_reports.png" height = 150px width = 375px style = "border-radius:15px; border: 1px solid black;">
</a>
</div>
<div class="col-md-4"></div>
</div>
<div class="row" style="display:flex; justify-content:center; align-items:flex-start;">
<h2>Habitat Reports</h2>
<!-- NAV PILLS -->
<ul class="nav nav-pills justify-content-center badge-tabs" id="badgeTabs">
<li class="nav-item">
<a class="nav-link active" data-bs-toggle="pill" href="#sav">
<img src="images/badges/sav_badge.png">
<div class="badge-label">Submerged Aquatic Vegetation</div>
</a>
</li>
<li class="nav-item">
<a class="nav-link" data-bs-toggle="pill" href="#wc">
<img src="images/badges/wc_badge.png">
<div class="badge-label">Water Column</div>
</a>
</li>
<li class="nav-item">
<a class="nav-link" data-bs-toggle="pill" href="#coral">
<img src="images/badges/coral_badge.png">
<div class="badge-label">Coral Reef</div>
</a>
</li>
<li class="nav-item">
<a class="nav-link" data-bs-toggle="pill" href="#oyster">
<img src="images/badges/oyster_badge.png">
<div class="badge-label">Oyster Reef</div>
</a>
</li>
<li class="nav-item">
<a class="nav-link" data-bs-toggle="pill" href="#cw">
<img src="images/badges/cw_badge.png">
<div class="badge-label">Coastal Wetlands</div>
</a>
</li>
</ul>
<!-- TAB CONTENT -->
<div class="tab-content mt-4 col-md-6">
<div class="tab-pane fade show active" id="sav">
<div class="card p-3">
<a href="https://floridaseacar.github.io/SEACAR_Trend_Analyses/SAV/output/SAV_Report.html", target="_blank">
Submerged Aquatic Vegetation Report
</a>
<a href="https://floridaseacar.github.io/SEACAR_Trend_Analyses/SAV_WC_Analysis/DRAFT_SAV_WC_Report.pdf", target="_blank">
Submerged Aquatic Vegetation - Water Column Analysis
</a>
</div>
</div>
<div class="tab-pane fade" id="wc">
<div class="card p-3">
<a href="https://floridaseacar.github.io/SEACAR_Trend_Analyses/Nekton/output/Nekton_SpeciesRichness_Report.html", target="_blank">
Nekton Species Richness
</a>
</div>
</div>
<div class="tab-pane fade" id="coral">
<div class="card p-3">
<a href="https://floridaseacar.github.io/SEACAR_Trend_Analyses/Coral/output/PercentCover/Coral_PercentCover_Report.html", target="_blank">
Coral Percent Cover
</a>
<a href="https://floridaseacar.github.io/SEACAR_Trend_Analyses/Coral/output/SpeciesRichness/Coral_SpeciesRichness_Report.html", target="_blank">
Coral Species Richness
</a>
</div>
</div>
<div class="tab-pane fade" id="oyster">
<div class="card p-3">
<a href="https://floridaseacar.github.io/SEACAR_Trend_Analyses/Oyster/output/Oyster_AllParameters_Report.html", target="_blank">
Oyster Reef Report
</a>
</div>
</div>
<div class="tab-pane fade" id="cw">
<div class="card p-3">
<a href="https://floridaseacar.github.io/SEACAR_Trend_Analyses/Coastal_Wetlands/output/CoastalWetlands_SpeciesRichness_Report.html", target="_blank">
Coastal Wetlands Species Richness
</a>
</div>
</div>
</div>
</div>
</div>
<hr>
<div class="funding_text">
<div class="chunk" id="funding"><div class="rcode"><!--html_preserve--><h4>Acknowledgements & Funding</h4>
<p>The data used in this analysis is from the Export Standardized Tables in the SEACAR Data Discovery Interface (DDI). Documents and information available through the SEACAR DDI are owned by the data provider(s) and users are expected to provide appropriate credit following accepted citation formats. Users are encouraged to access data to maximize utilization of gained knowledge, reducing redundant research and facilitating partnerships and scientific innovation.</p>
<p>With respect to documents and information available from SEACAR DDI, neither the State of Florida nor the Florida Department of Environmental Protection makes any warranty, expressed or implied, including the warranties of merchantability and fitness for a particular purpose arising out of the use or inability to use the data, or assumes any legal liability or responsibility for the accuracy, completeness, or usefulness of any information, apparatus, product, or process disclosed, or represents that its use would not infringe privately owned rights.</p>
<p>This report was funded in part, through a grant agreement from the Florida Department of Environmental Protection, Florida Coastal Management Program, by a grant provided by the Office for Coastal Management under the Coastal Zone Management Act of 1972, as amended, National Oceanic and Atmospheric Administration. The views, statements, findings, conclusions and recommendations expressed herein are those of the author(s) and do not necessarily reflect the views of the State of Florida, NOAA or any of their sub agencies.</p>
<div style = "funding_text">
<img src="https://floridaseacar.github.io/images/dep-logos.png">
</div><!--/html_preserve--></div></div>
<p class="publish_date">Published: <code class="knitr inline">2025-12-01</code></p>
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