SegAlign/.travis.yml at main · FluidNumerics/SegAlign · GitHub

1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
language: cpp

os: linux
dist: bionic

before_install:
  - git submodule update --init --recursive
  - sudo apt update
  - sudo apt-get --yes install build-essential
  - sudo apt-get --yes install libboost-all-dev
  - sudo apt-get --yes install zlib1g-dev
  - wget https://developer.download.nvidia.com/compute/cuda/repos/ubuntu1804/x86_64/cuda-ubuntu1804.pin
  - sudo mv cuda-ubuntu1804.pin /etc/apt/preferences.d/cuda-repository-pin-600
  - wget http://developer.download.nvidia.com/compute/cuda/10.2/Prod/local_installers/cuda-repo-ubuntu1804-10-2-local-10.2.89-440.33.01_1.0-1_amd64.deb
  - sudo dpkg -i cuda-repo-ubuntu1804-10-2-local-10.2.89-440.33.01_1.0-1_amd64.deb
  - sudo apt-key add /var/cuda-repo-10-2-local-10.2.89-440.33.01/7fa2af80.pub
  - sudo apt-get update
  - sudo apt-get -y install cuda
  - rm cuda-repo-ubuntu1804-10-2-local-10.2.89-440.33.01_1.0-1_amd64.deb
  - CUDA_HOME=/usr/local/cuda-10.2
  - LD_LIBRARY_PATH=${CUDA_HOME}/lib64:${LD_LIBRARY_PATH}
  - PATH=${CUDA_HOME}/bin:${PATH}
  - CURR=${PWD}
  - cd ${CURR}/submodules/lastz/src
  - make -j $(nproc)
  - PATH=${CURR}/submodules/lastz/src/:${PATH}
  - cd ${CURR}

compiler: nvcc

before_script:
    - mkdir ${CURR}/build
    - cd ${CURR}/build
    - cmake -DCMAKE_BUILD_TYPE=Release -DTBB_ROOT=${PWD}/../submodules/TBB -DCMAKE_PREFIX_PATH=${PWD}/../submodules/TBB/cmake ..
    - make -j $(nproc)
    - PATH=${CURR}/build/:${PATH}
    - PATH=${CURR}/scripts/:${PATH}

script:
  - run_segalign --help
  - segalign_repeat_masker --help