Add DOCKERFILE

Author: Max Czapanskiy

.Rbuildignore

@@ -8,3 +8,4 @@
 analysis
 ^data-raw$
 ^runtime\.txt$
+^Dockerfile$

Dockerfile

@@ -0,0 +1,19 @@
+# get the base image, the rocker/verse has R, RStudio and pandoc
+FROM rocker/verse:4.0.4
+
+# required
+MAINTAINER Max Czapanskiy <[email protected]>
+
+COPY . /cetaceanbcg
+
+# go into the repo directory
+RUN . /etc/environment \
+  # Install linux depedendencies here
+  # e.g. need this for ggforce::geom_sina
+  && sudo apt-get update \
+  && sudo apt-get install libudunits2-dev -y \
+  # build this compendium package
+  && R -e "devtools::install('/cetaceanbcg', dep=TRUE)" \
+  # render the manuscript into a docx, you'll need to edit this if you've
+  # customised the location and name of your main Rmd file
+  && R -e "rmarkdown::render('/cetaceanbcg/analysis/paper/paper.Rmd')"

README.Rmd

@@ -17,7 +17,7 @@ Authors <- "Czapanskiy, M. F., Ponganis, P. J., Fahlbusch, J. A., and Goldbogen,
 
 # cetaceanbcg
 
-[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh///main?urlpath=rstudio)
+[![Binder](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/FlukeAndFeather/cetaceanbcg/main?urlpath=rstudio)
 
 This repository contains the data and code for our paper: