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Move domain-specific functionality to subpackages (#240)
* Move domain-specific functionality to subpackages * Add FastMakie.jl * Update tests * Add subpackage CI * run SciMLStyle * Add sysimage example * Update documentation * Rerun notebooks
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‎.github/workflows/ci-fastmakie.yml

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name: CI - FastMakie
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on:
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push:
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paths-ignore:
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- 'docs/**'
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- 'FastTabular/**'
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- 'FastText/**'
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- 'FastVision/**'
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- '*.md'
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jobs:
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test:
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name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }}
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runs-on: ${{ matrix.os }}
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strategy:
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fail-fast: false
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matrix:
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version:
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- '1.6'
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os:
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- ubuntu-latest
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- macOS-latest
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- windows-latest
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arch:
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- x64
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steps:
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- uses: actions/checkout@v2
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- uses: julia-actions/setup-julia@v1
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with:
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version: ${{ matrix.version }}
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arch: ${{ matrix.arch }}
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- uses: actions/cache@v1
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env:
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cache-name: cache-artifacts
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with:
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path: ~/.julia/artifacts
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key: ${{ runner.os }}-test-${{ env.cache-name }}-${{ hashFiles('**/Project.toml') }}
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restore-keys: |
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${{ runner.os }}-test-${{ env.cache-name }}-
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${{ runner.os }}-test-
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${{ runner.os }}-
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- name: Dev FastAI
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run: |
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julia --color=yes --project=./FastMakie -e 'using Pkg; pkg"dev ."'
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shell: bash
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- name: Dev test dependencies
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run: |
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julia --color=yes --project=./FastMakie/test -e 'using Pkg; pkg"dev . ./FastMakie "'
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shell: bash
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- uses: julia-actions/julia-buildpkg@latest
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with:
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project: './FastMakie/'
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- name: Run tests
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run: |
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julia --color=yes --depwarn=yes --project=./FastMakie/test -e 'include("FastMakie/test/runtests.jl")'
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continue-on-error: ${{ matrix.version == 'nightly' }}
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shell: bash

‎.github/workflows/ci-fasttabular.yml

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name: CI - FastTabular
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on:
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push:
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paths-ignore:
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- 'docs/**'
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- 'FastMakie/**'
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- 'FastText/**'
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- 'FastVision/**'
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- '*.md'
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jobs:
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test:
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name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }}
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runs-on: ${{ matrix.os }}
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strategy:
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fail-fast: false
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matrix:
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version:
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- '1.6'
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os:
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- ubuntu-latest
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- macOS-latest
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arch:
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- x64
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steps:
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- uses: actions/checkout@v2
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- uses: julia-actions/setup-julia@v1
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with:
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version: ${{ matrix.version }}
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arch: ${{ matrix.arch }}
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- uses: actions/cache@v1
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env:
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cache-name: cache-artifacts
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with:
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path: ~/.julia/artifacts
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key: ${{ runner.os }}-test-${{ env.cache-name }}-${{ hashFiles('**/Project.toml') }}
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restore-keys: |
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${{ runner.os }}-test-${{ env.cache-name }}-
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${{ runner.os }}-test-
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${{ runner.os }}-
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- name: Dev FastAI
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run: |
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julia --color=yes --project=./FastTabular -e 'using Pkg; pkg"dev ."'
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shell: bash
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- name: Dev test dependencies
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run: |
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julia --color=yes --project=./FastTabular/test -e 'using Pkg; pkg"dev . ./FastTabular "'
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shell: bash
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- uses: julia-actions/julia-buildpkg@latest
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with:
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project: './FastTabular/'
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- name: Run tests
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run: |
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julia --color=yes --depwarn=yes --project=./FastTabular/test -e 'include("FastTabular/test/runtests.jl")'
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continue-on-error: ${{ matrix.version == 'nightly' }}
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shell: bash

‎.github/workflows/ci-fasttext.yml

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name: CI - FastText
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on:
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push:
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paths-ignore:
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- 'docs/**'
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- 'FastMakie/**'
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- 'FastTabular/**'
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- 'FastVision/**'
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- '*.md'
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jobs:
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test:
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name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }}
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runs-on: ${{ matrix.os }}
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strategy:
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fail-fast: false
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matrix:
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version:
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- '1.6'
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os:
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- ubuntu-latest
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- macOS-latest
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- windows-latest
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arch:
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- x64
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steps:
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- uses: actions/checkout@v2
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- uses: julia-actions/setup-julia@v1
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with:
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version: ${{ matrix.version }}
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arch: ${{ matrix.arch }}
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- uses: actions/cache@v1
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env:
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cache-name: cache-artifacts
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with:
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path: ~/.julia/artifacts
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key: ${{ runner.os }}-test-${{ env.cache-name }}-${{ hashFiles('**/Project.toml') }}
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restore-keys: |
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${{ runner.os }}-test-${{ env.cache-name }}-
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${{ runner.os }}-test-
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${{ runner.os }}-
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- name: Dev FastAI
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run: |
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julia --color=yes --project=./FastText -e 'using Pkg; pkg"dev ."'
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shell: bash
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- name: Dev test dependencies
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run: |
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julia --color=yes --project=./FastText/test -e 'using Pkg; pkg"dev . ./FastText "'
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shell: bash
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- uses: julia-actions/julia-buildpkg@latest
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with:
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project: './FastText/'
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- name: Run tests
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run: |
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julia --color=yes --depwarn=yes --project=./FastText/test -e 'include("FastText/test/runtests.jl")'
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continue-on-error: ${{ matrix.version == 'nightly' }}
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shell: bash

‎.github/workflows/ci-fastvision.yml

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name: CI - FastVision
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on:
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push:
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paths-ignore:
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- 'docs/**'
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- 'FastTabular/**'
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- 'FastText/**'
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- '*.md'
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pull_request:
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paths-ignore:
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- 'docs/**'
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- 'FastTabular/**'
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- 'FastText/**'
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- '*.md'
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jobs:
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test:
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name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }}
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runs-on: ${{ matrix.os }}
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strategy:
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fail-fast: false
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matrix:
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version:
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- '1.6'
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os:
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- ubuntu-latest
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- macOS-latest
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arch:
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- x64
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steps:
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- uses: actions/checkout@v2
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- uses: julia-actions/setup-julia@v1
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with:
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version: ${{ matrix.version }}
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arch: ${{ matrix.arch }}
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- uses: actions/cache@v1
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env:
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cache-name: cache-artifacts
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with:
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path: ~/.julia/artifacts
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key: ${{ runner.os }}-test-${{ env.cache-name }}-${{ hashFiles('**/Project.toml') }}
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restore-keys: |
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${{ runner.os }}-test-${{ env.cache-name }}-
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${{ runner.os }}-test-
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${{ runner.os }}-
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- name: Dev FastAI
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run: |
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julia --color=yes --project=./FastVision -e 'using Pkg; pkg"dev ."'
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shell: bash
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- name: Dev test dependencies
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run: |
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julia --color=yes --project=./FastVision/test -e 'using Pkg; pkg"dev . ./FastVision ./FastMakie"'
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shell: bash
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- uses: julia-actions/julia-buildpkg@latest
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with:
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project: './FastVision/'
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- name: Run tests
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run: |
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julia --color=yes --depwarn=yes --project=./FastVision/test -e 'include("FastVision/test/runtests.jl")'
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continue-on-error: ${{ matrix.version == 'nightly' }}
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shell: bash

‎.github/workflows/ci.yml

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name: CI
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on:
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- push
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- pull_request
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push:
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paths-ignore:
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- 'docs/**'
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- 'FastMakie/**'
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- 'FastVision/**'
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- 'FastTabular/**'
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- 'FastText/**'
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- '*.md'
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pull_request:
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paths-ignore:
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- 'docs/**'
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- 'FastMakie/**'
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- 'FastVision/**'
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- 'FastTabular/**'
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- 'FastText/**'
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- '*.md'
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jobs:
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test:
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name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }}

‎.github/workflows/pollenbuild.yml

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name: pollenbuild
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name: Documentation - Build
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version: '1.7'
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- name: "Install package and docs dependencies"
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run: |
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julia --color=yes --project=./docs -e 'using Pkg; Pkg.add([Pkg.PackageSpec(path="."), Pkg.PackageSpec(url="https://github.com/c42f/JuliaSyntax.jl"), Pkg.PackageSpec(url="https://github.com/lorenzoh/ModuleInfo.jl"), Pkg.PackageSpec(url="https://github.com/lorenzoh/Pollen.jl", rev="main")]); Pkg.instantiate();'
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julia --color=yes --project=./docs -e 'using Pkg; pkg"dev . ./FastVision ./FastMakie ./FastTabular https://github.com/c42f/JuliaSyntax.jl https://github.com/lorenzoh/ModuleInfo.jl https://github.com/lorenzoh/Pollen.jl"; Pkg.instantiate();'
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- name: Build
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run: |
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julia --color=yes --project=./docs ./docs/make.jl ./pollen/dev/

‎.github/workflows/pollenpr.yml

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name: Documentation - PR
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on:
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- pr
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jobs:
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pollen:
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name: "Pollen - test documentation build"
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runs-on: ubuntu-latest
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steps:
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- uses: actions/checkout@v2
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- uses: actions/checkout@v2
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with:
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ref: pollen
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path: pollen
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- uses: julia-actions/setup-julia@latest
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with:
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version: '1.7'
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- name: "Install package and docs dependencies"
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run: |
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julia --color=yes --project=./docs -e 'using Pkg; pkg"dev . ./FastVision ./FastMakie ./FastTabular https://github.com/c42f/JuliaSyntax.jl https://github.com/lorenzoh/ModuleInfo.jl https://github.com/lorenzoh/Pollen.jl"; Pkg.instantiate();'
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- name: Build
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run: |
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julia --color=yes --project=./docs ./docs/make.jl ./pollen/dev/
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- name: Deploy
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run: |
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cd pollen
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git config user.name github-actions
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git config user.email [email protected]
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git add .
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git commit -m "Build documentation data (Pollen.jl)"
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git push
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‎.github/workflows/pollenstatic.yml

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name: pollenstatic
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name: Documentation - Deploy
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‎.gitignore

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docs/Manifest.toml
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development/**
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**/*.jld2
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**/*.jld2
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*.so

‎CHANGELOG.md

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### Changed
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- (BREAKING) Now uses [MLUtils.jl](https://github.com/JuliaML/MLUtils.jl) to create and load datasets and data containers
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- (BREAKING): Now uses [MLUtils.jl](https://github.com/JuliaML/MLUtils.jl) to create and load datasets and data containers
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- Replaces dependencies MLDataPattern.jl, LearnBase.jl, and DataLoaders.jl
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- Data containers must now implement the `Base.getindex`/`MLUtils.getobs` and `Base.length`/`MLUtils.numobs` interfaces.
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- Previously exported `MLDataPattern.datasubset` has been replaced by `MLUtils.ObsView`
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- Documentation has been updated appropriately
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- (BREAKING): `FastAI.Vision` now lives in a separate package `FastVision` that holds all computer vision-related functionality.
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- (BREAKING): `FastAI.Tabular` now lives in a separate package `FastTabular` that holds all tabular data-related functionality.
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### Removed
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- (BREAKING): `FastAI.Models` submodule. `Models` submodule of domain libraries, e.g. `FastVision.Models` should now be used.
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## v0.4.3 (2022/05/14)
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- New interfaces
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- `blockbackbone` creates a default backbone for an input block
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- Support for tabular data along with recipes and learning methods:
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- [Tabular classification tutorial](https://fluxml.ai/FastAI.jl/dev/notebooks/tabularclassification.ipynb.html)
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- [Tabular classification tutorial](https://fluxml.ai/FastAI.jl/dev/docs/notebooks/tabularclassification.ipynb.html)
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- [`TabularPreprocessing`](https://fluxml.ai/FastAI.jl/dev/REFERENCE/FastAI.TabularPreprocessing.html), [`TableRow`](https://fluxml.ai/FastAI.jl/dev/REFERENCE/FastAI.TableRow.html), [`TableDataset`](https://fluxml.ai/FastAI.jl/dev/REFERENCE/FastAI.Datasets.TableDataset.html), [`TabularClassificiationSingle`](https://fluxml.ai/FastAI.jl/dev/REFERENCE/FastAI.TabularClassificationSingle.html), [`TabularRegression`](https://fluxml.ai/FastAI.jl/dev/REFERENCE/FastAI.TabularRegression.html)
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- [README](https://fluxml.ai/FastAI.jl/dev/README.md.html)
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- [Introduction](https://fluxml.ai/FastAI.jl/dev/docs/introduction.md.html)
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- [Data containers](https://fluxml.ai/FastAI.jl/dev/docs/data_containers.md.html)
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- Combined how-tos on training [into a single page](https://fluxml.ai/FastAI.jl/dev/notebooks/training.ipynb.html)
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- Combined how-tos on training [into a single page](https://fluxml.ai/FastAI.jl/dev/docs/notebooks/training.ipynb.html)
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- Breaking changes to [`methodlearner`](https://fluxml.ai/FastAI.jl/dev/REFERENCE/FastAI.methodlearner.html):
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- now accepts `callbacks` as kwarg
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- `validdata` no longer keyword

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